Wall clock time and date at job start Mon Mar 30 2020 01:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99835 * 2 1 4 4 H 1.08998 * 109.47295 * 30.00573 * 3 2 1 5 5 C 1.50693 * 109.47057 * 269.99672 * 3 2 1 6 6 O 1.21281 * 120.00369 * 355.00677 * 5 3 2 7 7 N 1.34786 * 120.00039 * 174.99990 * 5 3 2 8 8 C 1.39121 * 119.99920 * 184.36804 * 7 5 3 9 9 C 1.38646 * 120.28683 * 325.34619 * 8 7 5 10 10 C 1.38223 * 120.03279 * 180.25797 * 9 8 7 11 11 C 1.38864 * 120.61570 * 359.74360 * 10 9 8 12 12 C 1.36462 * 120.58020 * 359.97438 * 11 10 9 13 13 C 1.40734 * 119.94128 * 0.02562 * 12 11 10 14 14 C 1.41072 * 120.30236 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00276 * 154.83424 * 14 13 12 16 16 C 1.39953 * 119.99913 * 334.82989 * 14 13 12 17 17 N 1.30853 * 120.00167 * 334.81831 * 16 14 13 18 18 Si 1.86800 * 119.99850 * 154.81980 * 16 14 13 19 19 H 1.48504 * 109.47205 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.47176 * 299.99672 * 18 16 14 21 21 H 1.48493 * 109.47516 * 60.00240 * 18 16 14 22 22 C 1.53003 * 109.46752 * 150.00359 * 3 2 1 23 23 C 1.52995 * 117.50001 * 8.74297 * 22 3 2 24 24 C 1.53005 * 117.49829 * 300.08117 * 22 3 2 25 25 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47128 * 299.99556 * 1 2 3 27 27 H 1.08999 * 109.47168 * 59.99866 * 1 2 3 28 28 H 0.96996 * 119.99391 * 4.36899 * 7 5 3 29 29 H 1.07994 * 119.98174 * 359.97438 * 9 8 7 30 30 H 1.08004 * 119.69500 * 179.76295 * 10 9 8 31 31 H 1.08006 * 119.71155 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.03434 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99965 * 354.63734 * 17 16 14 34 34 H 1.08995 * 115.55050 * 154.41822 * 22 3 2 35 35 H 1.09001 * 117.50286 * 0.02562 * 23 22 3 36 36 H 1.09003 * 117.49940 * 145.02299 * 23 22 3 37 37 H 1.09001 * 117.50111 * 214.97890 * 24 22 3 38 38 H 1.08999 * 117.49891 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.7610 3.4670 -2.9795 9 6 3.1180 2.5945 -3.9962 10 6 3.2232 3.0529 -5.2959 11 6 2.9690 4.3840 -5.5992 12 6 2.6103 5.2631 -4.6190 13 6 2.4961 4.8221 -3.2874 14 6 2.1263 5.7244 -2.2680 15 1 1.6517 5.3590 -1.3693 16 6 2.3745 7.0932 -2.4212 17 7 3.3385 7.4994 -3.2074 18 14 1.3298 8.3404 -1.5032 19 1 1.7914 9.7124 -1.8346 20 1 -0.0916 8.1865 -1.9046 21 1 1.4588 8.1139 -0.0414 22 6 3.3589 1.2632 0.7212 23 6 3.9152 -0.1111 1.0990 24 6 3.3638 0.8167 2.1846 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 2.9073 3.5937 -0.9329 29 1 3.3184 1.5574 -3.7718 30 1 3.5053 2.3694 -6.0831 31 1 3.0552 4.7264 -6.6199 32 1 2.4143 6.2963 -4.8647 33 1 3.9303 6.8529 -3.6229 34 1 4.0735 2.0319 0.4273 35 1 3.3206 -0.9852 0.8335 36 1 4.9959 -0.2463 1.0540 37 1 4.0819 1.2913 2.8533 38 1 2.4061 0.5535 2.6337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578764758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:10 Heat of formation + Delta-G solvation = -56.004253 kcal Electronic energy + Delta-G solvation = -21273.905340 eV Core-core repulsion = 18081.169950 eV Total energy + Delta-G solvation = -3192.735390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57248 -39.84216 -38.56004 -37.10545 -35.80250 -35.50336 -31.33254 -31.12155 -29.27552 -27.29910 -26.77211 -23.67851 -23.21068 -22.88864 -22.15474 -20.89490 -19.89846 -18.83327 -18.08645 -17.49447 -16.91213 -16.60606 -16.31030 -15.89968 -15.72497 -15.47327 -15.02949 -14.68571 -14.41550 -14.22937 -13.97067 -13.83932 -13.32306 -12.71503 -12.57736 -12.48833 -12.45127 -12.27445 -12.22218 -11.95845 -11.60243 -11.48680 -11.37524 -11.12959 -11.03814 -10.79445 -10.18317 -9.57133 -9.31155 -8.84117 -6.42844 0.72222 0.89564 1.53714 1.64350 1.67174 1.81443 2.12133 2.33779 2.68897 2.72590 2.91204 3.51853 3.56776 3.79274 3.88409 4.12074 4.22921 4.35580 4.38361 4.39361 4.46491 4.52255 4.66299 4.76613 4.83093 4.92755 4.97381 5.05642 5.20089 5.27478 5.34236 5.47106 5.64223 5.76733 5.87456 5.94299 6.03176 6.11994 6.32680 6.60615 6.83412 6.89990 7.30702 8.04677 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.005877 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.596876 B = 4763.479209 C = 5703.890501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.370 6.370 3 C 0.117 3.883 4 H 0.111 0.889 5 C 0.477 3.523 6 O -0.567 6.567 7 N -0.632 5.632 8 C 0.001 3.999 9 C -0.090 4.090 10 C -0.242 4.242 11 C -0.095 4.095 12 C -0.227 4.227 13 C 0.064 3.936 14 C -0.542 4.542 15 H 0.082 0.918 16 C 0.008 3.992 17 N -0.813 5.813 18 Si 1.113 2.887 19 H -0.275 1.275 20 H -0.270 1.270 21 H -0.250 1.250 22 C -0.181 4.181 23 C -0.167 4.167 24 C -0.140 4.140 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.411 0.589 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.285 0.715 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -6.791 12.034 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.287 6.287 3 C 0.055 3.945 4 H 0.128 0.872 5 C 0.265 3.735 6 O -0.446 6.446 7 N -0.276 5.276 8 C -0.093 4.093 9 C -0.110 4.110 10 C -0.262 4.262 11 C -0.114 4.114 12 C -0.247 4.247 13 C 0.060 3.940 14 C -0.570 4.570 15 H 0.100 0.900 16 C -0.209 4.209 17 N -0.436 5.436 18 Si 0.931 3.069 19 H -0.200 1.200 20 H -0.195 1.195 21 H -0.174 1.174 22 C -0.200 4.200 23 C -0.204 4.204 24 C -0.176 4.176 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.248 0.752 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.436 -5.899 11.613 13.251 hybrid contribution 0.297 -1.187 -0.760 1.440 sum -2.139 -7.086 10.853 13.137 Atomic orbital electron populations 1.23032 0.79521 1.04339 1.00325 1.87924 1.21355 1.25235 1.94230 1.21404 0.96831 0.86858 0.89390 0.87174 1.22099 0.76563 0.81527 0.93330 1.90617 1.52104 1.54446 1.47454 1.42887 1.63032 1.14646 1.07059 1.17785 1.12317 0.94538 0.84657 1.20858 0.98740 0.98156 0.93267 1.20588 1.13768 0.95923 0.95932 1.20654 0.98808 0.93494 0.98421 1.20790 1.11625 0.99265 0.92977 1.17825 0.91141 0.91529 0.93506 1.20523 1.37563 0.94218 1.04677 0.90026 1.28341 0.96218 1.00758 0.95612 1.70576 1.10753 1.40916 1.21363 0.83038 0.74526 0.73034 0.76318 1.20018 1.19485 1.17395 1.22291 0.95834 1.01788 1.00044 1.22919 1.01085 0.93293 1.03104 1.23064 1.03791 1.01550 0.89228 0.87529 0.91252 0.95866 0.75163 0.87657 0.86661 0.86562 0.88549 0.90208 0.86442 0.88684 0.87989 0.86447 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.81 113.37 1.23 1.78 16 2 O -0.37 -10.83 8.24 -129.99 -1.07 -11.90 16 3 C 0.12 3.36 2.87 29.85 0.09 3.44 16 4 H 0.11 2.64 7.79 -2.39 -0.02 2.63 16 5 C 0.48 18.78 6.96 87.65 0.61 19.39 16 6 O -0.57 -26.99 13.92 15.96 0.22 -26.77 16 7 N -0.63 -26.04 4.79 -302.28 -1.45 -27.49 16 8 C 0.00 0.07 6.34 38.88 0.25 0.32 16 9 C -0.09 -4.46 8.69 22.36 0.19 -4.26 16 10 C -0.24 -11.36 10.04 22.42 0.22 -11.14 16 11 C -0.10 -4.48 9.96 22.00 0.22 -4.26 16 12 C -0.23 -11.69 7.88 22.46 0.18 -11.52 16 13 C 0.06 3.34 5.32 -21.18 -0.11 3.23 16 14 C -0.54 -26.91 8.35 23.38 0.20 -26.72 16 15 H 0.08 3.80 7.39 -2.91 -0.02 3.78 16 16 C 0.01 0.38 4.95 85.25 0.42 0.80 16 17 N -0.81 -41.85 12.32 21.83 0.27 -41.58 16 18 Si 1.11 40.21 30.00 68.60 2.06 42.27 16 19 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.25 -7.97 7.11 99.48 0.71 -7.26 16 22 C -0.18 -4.38 5.66 -10.79 -0.06 -4.44 16 23 C -0.17 -3.69 9.88 30.62 0.30 -3.39 16 24 C -0.14 -2.45 10.19 30.62 0.31 -2.14 16 25 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.07 1.22 8.09 -2.38 -0.02 1.20 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.41 15.00 7.86 -92.71 -0.73 14.27 16 29 H 0.11 5.29 6.20 -2.91 -0.02 5.27 16 30 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.10 5.12 6.45 -2.91 -0.02 5.10 16 33 H 0.29 15.40 6.62 -92.71 -0.61 14.78 16 34 H 0.12 2.87 7.95 -2.39 -0.02 2.85 16 35 H 0.09 2.35 7.06 -2.39 -0.02 2.33 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -64.68 320.70 4.57 -60.11 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: 0.50 Total: 44.26 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.04 Total: -38.90 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.18 Total: -69.07 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.85 Total: -38.67 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.06 Total: 42.27 kcal Total: -64.68 4.57 -60.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578764758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.106 kcal (2) G-P(sol) polarization free energy of solvation -64.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds