Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47575 * 269.99973 * 3 2 1 5 5 H 1.48502 * 109.47174 * 30.00367 * 3 2 1 6 6 H 1.48504 * 109.47170 * 150.00188 * 3 2 1 7 7 C 1.37881 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99835 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.53127 * 109.52082 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27758 * 177.55974 * 10 9 7 12 12 N 1.46849 * 109.52088 * 300.81967 * 11 10 9 13 13 C 1.38461 * 110.99587 * 185.84148 * 12 11 10 14 14 C 1.39492 * 120.95443 * 299.99749 * 13 12 11 15 15 C 1.37775 * 119.21228 * 179.97438 * 14 13 12 16 16 N 1.32181 * 121.22248 * 359.97438 * 15 14 13 17 17 C 1.31633 * 122.11723 * 0.02562 * 16 15 14 18 18 C 1.39538 * 120.62597 * 0.02562 * 17 16 15 19 19 C 1.47453 * 120.63450 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99654 * 359.97438 * 19 18 17 21 21 O 1.21592 * 119.99659 * 179.97438 * 19 18 17 22 22 C 1.46842 * 111.20228 * 61.74451 * 12 11 10 23 23 C 1.53037 * 109.52233 * 298.25626 * 22 12 11 24 24 H 0.96994 * 120.00111 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.57589 * 59.84458 * 9 7 2 26 26 H 1.09000 * 109.50096 * 57.61659 * 10 9 7 27 27 H 1.08998 * 109.50063 * 297.50176 * 10 9 7 28 28 H 1.09004 * 109.46005 * 180.80625 * 11 10 9 29 29 H 1.08997 * 109.46154 * 60.83628 * 11 10 9 30 30 H 1.08001 * 120.39297 * 0.25923 * 14 13 12 31 31 H 1.07998 * 119.38598 * 180.02562 * 15 14 13 32 32 H 1.08002 * 119.68589 * 180.02562 * 17 16 15 33 33 H 0.96998 * 120.00433 * 0.02562 * 20 19 18 34 34 H 0.97005 * 119.99349 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46268 * 58.27173 * 22 12 11 36 36 H 1.08991 * 109.46477 * 178.24122 * 22 12 11 37 37 H 1.08998 * 109.50131 * 299.24126 * 23 22 12 38 38 H 1.08996 * 109.50521 * 179.11525 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0233 -2.6371 -0.0014 11 6 5.5525 -2.6309 -0.0623 12 7 5.9923 -1.9354 -1.2786 13 6 7.3655 -2.0247 -1.4320 14 6 8.2303 -1.5144 -0.4638 15 6 9.5907 -1.6232 -0.6529 16 7 10.0884 -2.2013 -1.7323 17 6 9.3190 -2.6996 -2.6771 18 6 7.9293 -2.6335 -2.5707 19 6 7.0673 -3.1922 -3.6286 20 7 7.6205 -3.7732 -4.7116 21 8 5.8576 -3.1287 -3.5238 22 6 5.5529 -0.5343 -1.2775 23 6 4.0237 -0.4779 -1.2528 24 1 -0.4850 0.8400 -0.0004 25 1 3.8764 -0.6786 0.8885 26 1 3.6266 -3.1630 -0.8698 27 1 3.6974 -3.1397 0.9093 28 1 5.9195 -3.6572 -0.0779 29 1 5.9487 -2.1169 0.8134 30 1 7.8381 -1.0439 0.4257 31 1 10.2628 -1.2295 0.0952 32 1 9.7678 -3.1640 -3.5428 33 1 8.5855 -3.8241 -4.7950 34 1 7.0534 -4.1404 -5.4077 35 1 5.9492 -0.0300 -0.3961 36 1 5.9201 -0.0378 -2.1756 37 1 3.6271 -0.9699 -2.1409 38 1 3.6981 0.5622 -1.2362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580494223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = 17.320211 kcal Electronic energy + Delta-G solvation = -21678.627930 eV Core-core repulsion = 18521.364878 eV Total energy + Delta-G solvation = -3157.263051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96284 -38.71464 -38.33473 -34.60238 -33.71878 -32.06726 -31.33068 -30.29463 -30.16837 -26.08927 -24.64434 -23.23227 -22.59126 -21.30406 -20.87394 -18.87200 -18.15871 -17.22781 -17.03370 -16.66804 -15.84729 -15.11697 -15.04546 -14.90267 -14.28893 -14.15080 -13.72603 -13.58584 -13.42931 -12.98892 -12.90198 -12.45266 -12.28153 -11.86287 -11.70010 -10.88825 -10.58891 -10.30072 -10.20039 -9.93882 -9.69992 -9.63484 -9.56135 -9.46918 -9.38389 -9.05312 -8.93034 -8.48465 -8.08554 -6.02407 -4.00345 0.53089 0.96320 2.93805 3.28979 3.37331 3.40067 3.44131 3.73166 3.84415 4.08328 4.44119 4.64312 4.72455 4.84341 5.10865 5.27439 5.31292 5.40527 5.50848 5.58039 5.65739 5.78773 5.99687 6.04515 6.12330 6.29168 6.33264 6.42379 6.75949 6.78179 6.83364 6.96006 7.24944 7.29047 7.38317 7.49060 7.64959 7.69136 7.82668 8.37104 8.58834 9.02828 9.60403 11.11290 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.005432 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.721398 B = 5153.342908 C = 5597.064132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.094 4.094 11 C 0.066 3.934 12 N -0.488 5.488 13 C 0.209 3.791 14 C -0.215 4.215 15 C 0.127 3.873 16 N -0.498 5.498 17 C 0.136 3.864 18 C -0.178 4.178 19 C 0.557 3.443 20 N -0.862 5.862 21 O -0.481 6.481 22 C 0.068 3.932 23 C -0.114 4.114 24 H 0.263 0.737 25 H 0.021 0.979 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.394 0.606 34 H 0.404 0.596 35 H 0.030 0.970 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.141 -4.879 -5.219 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.545 4.545 8 H 0.092 0.908 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.059 4.059 12 N -0.209 5.209 13 C 0.105 3.895 14 C -0.237 4.237 15 C -0.028 4.028 16 N -0.207 5.207 17 C -0.024 4.024 18 C -0.185 4.185 19 C 0.340 3.660 20 N -0.428 5.428 21 O -0.352 6.352 22 C -0.058 4.058 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.222 0.778 34 H 0.235 0.765 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.807 -4.901 -5.423 22.053 hybrid contribution 0.204 1.296 0.360 1.360 sum 21.011 -3.605 -5.063 21.911 Atomic orbital electron populations 1.69897 1.06253 1.26784 1.51206 1.25019 0.94662 0.98927 0.94649 0.86872 0.79793 0.83823 0.77866 1.20575 1.22572 1.19288 1.21042 0.88752 0.94455 1.50278 0.90785 1.19190 0.96817 0.91874 0.92612 1.21492 0.90521 0.99507 1.01694 1.22256 0.98929 0.97048 0.87712 1.59216 1.05808 1.15971 1.39897 1.19325 0.90572 0.88962 0.90634 1.22933 0.95398 1.03538 1.01874 1.22732 0.93128 0.92839 0.94138 1.67656 1.40210 1.10608 1.02205 1.22904 0.88763 0.94027 0.96729 1.21085 0.94601 1.05339 0.97481 1.17851 0.88006 0.78500 0.81637 1.43813 1.11138 1.64007 1.23890 1.90996 1.13287 1.54157 1.76755 1.22227 0.99007 0.85164 0.99377 1.22030 0.90552 1.00037 1.02574 0.92763 0.96059 0.91194 0.92066 0.91789 0.95052 0.84210 0.82448 0.82490 0.77758 0.76515 0.95166 0.91942 0.90613 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 3 Si 0.89 22.23 24.36 -169.99 -4.14 18.09 16 4 H -0.28 -6.85 6.89 56.52 0.39 -6.46 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 7 C -0.51 -14.46 9.14 -34.44 -0.31 -14.78 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.01 0.33 1.75 -91.64 -0.16 0.17 16 10 C -0.09 -1.95 5.32 -26.65 -0.14 -2.09 16 11 C 0.07 1.15 5.12 -3.83 -0.02 1.13 16 12 N -0.49 -8.60 2.71 -170.71 -0.46 -9.06 16 13 C 0.21 3.10 4.68 -83.40 -0.39 2.71 16 14 C -0.22 -2.64 8.78 -39.28 -0.35 -2.99 16 15 C 0.13 1.34 11.15 -17.57 -0.20 1.14 16 16 N -0.50 -5.59 10.34 -13.01 -0.13 -5.73 16 17 C 0.14 1.40 10.71 -17.15 -0.18 1.21 16 18 C -0.18 -2.33 5.91 -104.65 -0.62 -2.95 16 19 C 0.56 7.67 8.04 -12.51 -0.10 7.57 16 20 N -0.86 -7.31 8.83 30.44 0.27 -7.04 16 21 O -0.48 -9.05 16.00 5.28 0.08 -8.97 16 22 C 0.07 1.26 5.17 -3.84 -0.02 1.24 16 23 C -0.11 -2.57 4.84 -26.65 -0.13 -2.70 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 26 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.03 0.50 7.39 -51.93 -0.38 0.12 16 30 H 0.14 1.60 7.28 -52.49 -0.38 1.22 16 31 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.16 0.99 6.42 -52.49 -0.34 0.66 16 33 H 0.39 1.98 6.89 -40.82 -0.28 1.70 16 34 H 0.40 3.03 8.93 -40.82 -0.36 2.66 16 35 H 0.03 0.53 7.62 -51.93 -0.40 0.13 16 36 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 38 H 0.05 1.16 3.38 -51.93 -0.18 0.99 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -34.63 302.89 -6.59 -41.22 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.82 Total: 2.65 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.72 Total: -8.42 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.44 Total: -49.14 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.63 -6.59 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580494223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.543 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds