Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47575 * 269.99973 * 3 2 1 5 5 H 1.48502 * 109.47174 * 30.00367 * 3 2 1 6 6 H 1.48504 * 109.47170 * 150.00188 * 3 2 1 7 7 C 1.37881 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99835 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.53127 * 109.52082 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27758 * 177.55974 * 10 9 7 12 12 N 1.46849 * 109.52088 * 300.81967 * 11 10 9 13 13 C 1.38461 * 110.99587 * 185.84148 * 12 11 10 14 14 C 1.39492 * 120.95443 * 299.99749 * 13 12 11 15 15 C 1.37775 * 119.21228 * 179.97438 * 14 13 12 16 16 N 1.32181 * 121.22248 * 359.97438 * 15 14 13 17 17 C 1.31633 * 122.11723 * 0.02562 * 16 15 14 18 18 C 1.39538 * 120.62597 * 0.02562 * 17 16 15 19 19 C 1.47453 * 120.63450 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99654 * 359.97438 * 19 18 17 21 21 O 1.21592 * 119.99659 * 179.97438 * 19 18 17 22 22 C 1.46842 * 111.20228 * 61.74451 * 12 11 10 23 23 C 1.53037 * 109.52233 * 298.25626 * 22 12 11 24 24 H 0.96994 * 120.00111 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.57589 * 59.84458 * 9 7 2 26 26 H 1.09000 * 109.50096 * 57.61659 * 10 9 7 27 27 H 1.08998 * 109.50063 * 297.50176 * 10 9 7 28 28 H 1.09004 * 109.46005 * 180.80625 * 11 10 9 29 29 H 1.08997 * 109.46154 * 60.83628 * 11 10 9 30 30 H 1.08001 * 120.39297 * 0.25923 * 14 13 12 31 31 H 1.07998 * 119.38598 * 180.02562 * 15 14 13 32 32 H 1.08002 * 119.68589 * 180.02562 * 17 16 15 33 33 H 0.96998 * 120.00433 * 0.02562 * 20 19 18 34 34 H 0.97005 * 119.99349 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46268 * 58.27173 * 22 12 11 36 36 H 1.08991 * 109.46477 * 178.24122 * 22 12 11 37 37 H 1.08998 * 109.50131 * 299.24126 * 23 22 12 38 38 H 1.08996 * 109.50521 * 179.11525 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0233 -2.6371 -0.0014 11 6 5.5525 -2.6309 -0.0623 12 7 5.9923 -1.9354 -1.2786 13 6 7.3655 -2.0247 -1.4320 14 6 8.2303 -1.5144 -0.4638 15 6 9.5907 -1.6232 -0.6529 16 7 10.0884 -2.2013 -1.7323 17 6 9.3190 -2.6996 -2.6771 18 6 7.9293 -2.6335 -2.5707 19 6 7.0673 -3.1922 -3.6286 20 7 7.6205 -3.7732 -4.7116 21 8 5.8576 -3.1287 -3.5238 22 6 5.5529 -0.5343 -1.2775 23 6 4.0237 -0.4779 -1.2528 24 1 -0.4850 0.8400 -0.0004 25 1 3.8764 -0.6786 0.8885 26 1 3.6266 -3.1630 -0.8698 27 1 3.6974 -3.1397 0.9093 28 1 5.9195 -3.6572 -0.0779 29 1 5.9487 -2.1169 0.8134 30 1 7.8381 -1.0439 0.4257 31 1 10.2628 -1.2295 0.0952 32 1 9.7678 -3.1640 -3.5428 33 1 8.5855 -3.8241 -4.7950 34 1 7.0534 -4.1404 -5.4077 35 1 5.9492 -0.0300 -0.3961 36 1 5.9201 -0.0378 -2.1756 37 1 3.6271 -0.9699 -2.1409 38 1 3.6981 0.5622 -1.2362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580494223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = -10.055210 kcal Electronic energy + Delta-G solvation = -21679.815017 eV Core-core repulsion = 18521.364878 eV Total energy + Delta-G solvation = -3158.450139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96532 -39.93159 -39.47337 -36.21732 -34.71063 -34.01925 -32.17661 -31.86481 -31.49196 -27.86469 -25.53185 -24.65260 -24.15436 -22.79098 -21.80834 -20.52987 -19.11067 -18.85355 -18.16616 -18.06763 -16.82326 -16.64384 -16.23762 -15.90347 -15.57922 -15.52263 -15.19770 -14.86953 -14.65863 -14.53371 -14.35727 -14.07415 -13.61839 -13.40323 -13.21658 -12.76043 -12.26788 -12.19304 -11.74184 -11.49814 -11.35049 -11.04856 -10.93714 -10.70213 -10.56375 -10.49466 -10.46665 -10.22028 -9.32419 -8.30014 -6.33426 -0.35908 0.05146 1.28893 1.32577 1.43992 1.99341 2.31617 2.58224 2.66410 2.83181 3.04873 3.37764 3.80492 3.84508 3.87196 4.03116 4.05225 4.16543 4.28110 4.39170 4.49123 4.51489 4.56900 4.62723 4.68640 4.80305 4.88472 5.08090 5.09770 5.22465 5.47119 5.48400 5.65711 5.75741 5.94424 6.00428 6.32174 6.34072 6.57677 6.72987 6.82977 7.31226 7.48894 8.87512 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025363 B = 0.005432 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.721398 B = 5153.342908 C = 5597.064132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.240 1.240 7 C -0.517 4.517 8 H 0.028 0.972 9 C 0.016 3.984 10 C -0.089 4.089 11 C 0.077 3.923 12 N -0.503 5.503 13 C 0.180 3.820 14 C -0.216 4.216 15 C 0.137 3.863 16 N -0.505 5.505 17 C 0.151 3.849 18 C -0.193 4.193 19 C 0.554 3.446 20 N -0.835 5.835 21 O -0.546 6.546 22 C 0.077 3.923 23 C -0.110 4.110 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.197 0.803 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.773 -4.077 -5.184 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.163 1.163 7 C -0.555 4.555 8 H 0.047 0.953 9 C -0.003 4.003 10 C -0.127 4.127 11 C -0.049 4.049 12 N -0.225 5.225 13 C 0.077 3.923 14 C -0.238 4.238 15 C -0.018 4.018 16 N -0.214 5.214 17 C -0.009 4.009 18 C -0.199 4.199 19 C 0.338 3.662 20 N -0.402 5.402 21 O -0.422 6.422 22 C -0.048 4.048 23 C -0.147 4.147 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.167 0.833 31 H 0.209 0.791 32 H 0.213 0.787 33 H 0.246 0.754 34 H 0.243 0.757 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 25.524 -4.140 -5.422 26.420 hybrid contribution -1.207 0.900 0.289 1.533 sum 24.317 -3.240 -5.133 25.064 Atomic orbital electron populations 1.70060 1.08313 1.27981 1.53008 1.25935 0.95470 1.03162 0.94211 0.85809 0.79425 0.78468 0.78568 1.19681 1.22399 1.16307 1.21377 0.91638 0.92837 1.49683 0.95348 1.19133 0.93487 0.94167 0.93525 1.21358 0.93637 0.97226 1.00519 1.22085 0.95726 0.98261 0.88827 1.58974 1.08401 1.15131 1.39967 1.19445 0.89216 0.91222 0.92439 1.22988 0.95799 1.03495 1.01517 1.23251 0.92894 0.91321 0.94303 1.67801 1.40210 1.10767 1.02575 1.23424 0.87404 0.92613 0.97437 1.21161 0.95702 1.06036 0.97038 1.18128 0.87347 0.78151 0.82564 1.43577 1.12426 1.61867 1.22373 1.90979 1.15835 1.57088 1.78301 1.22025 0.95631 0.86584 1.00602 1.21833 0.93921 0.98745 1.00240 0.92609 0.95254 0.94113 0.91817 0.90618 0.92985 0.83306 0.79136 0.78663 0.75398 0.75746 0.93278 0.91209 0.93610 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 2 C 0.01 0.52 5.45 84.66 0.46 0.98 16 3 Si 0.95 46.02 24.36 68.60 1.67 47.69 16 4 H -0.27 -12.66 6.89 99.48 0.69 -11.98 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.24 -10.43 6.53 99.48 0.65 -9.78 16 7 C -0.52 -30.91 9.14 25.60 0.23 -30.67 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C 0.02 0.76 1.75 -11.46 -0.02 0.74 16 10 C -0.09 -3.79 5.32 30.65 0.16 -3.62 16 11 C 0.08 2.57 5.12 86.33 0.44 3.01 16 12 N -0.50 -17.18 2.71 -694.02 -1.88 -19.06 16 13 C 0.18 4.91 4.68 39.05 0.18 5.09 16 14 C -0.22 -4.49 8.78 22.46 0.20 -4.29 16 15 C 0.14 2.27 11.15 84.53 0.94 3.21 16 16 N -0.50 -9.04 10.34 -195.06 -2.02 -11.06 16 17 C 0.15 2.48 10.71 85.04 0.91 3.39 16 18 C -0.19 -4.56 5.91 -19.89 -0.12 -4.68 16 19 C 0.55 14.57 8.04 86.67 0.70 15.27 16 20 N -0.84 -12.24 8.83 -175.88 -1.55 -13.79 16 21 O -0.55 -20.92 16.00 -4.01 -0.06 -20.98 16 22 C 0.08 2.76 5.17 86.33 0.45 3.21 16 23 C -0.11 -4.93 4.84 30.65 0.15 -4.79 16 24 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 25 H 0.03 1.37 7.19 -2.39 -0.02 1.36 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 29 H 0.05 1.53 7.39 -2.39 -0.02 1.51 16 30 H 0.15 2.78 7.28 -2.91 -0.02 2.76 16 31 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.20 1.47 6.42 -2.91 -0.02 1.45 16 33 H 0.41 2.63 6.89 -92.71 -0.64 1.99 16 34 H 0.41 5.42 8.93 -92.70 -0.83 4.59 16 35 H 0.05 1.56 7.62 -2.38 -0.02 1.54 16 36 H 0.07 2.37 8.10 -2.39 -0.02 2.36 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.97 3.38 -2.39 -0.01 1.96 16 Total: -1.00 -80.23 302.89 0.70 -79.53 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.44 Total: 12.28 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.69 Total: -13.15 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.15 Total: -105.37 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.06 Total: -20.98 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -80.23 0.70 -79.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580494223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.475 kcal (2) G-P(sol) polarization free energy of solvation -80.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds