Wall clock time and date at job start Mon Mar 30 2020 02:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47009 * 180.02562 * 15 14 12 17 17 N 1.31795 * 119.12263 * 269.72985 * 16 15 14 18 18 C 1.32338 * 120.81805 * 179.76315 * 17 16 15 19 19 C 1.38592 * 119.09959 * 0.50335 * 18 17 16 20 20 C 1.38600 * 118.40542 * 359.75478 * 19 18 17 21 21 N 1.31794 * 119.12242 * 90.00231 * 16 15 14 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.09003 * 109.47333 * 300.00142 * 15 14 12 31 31 H 1.09002 * 109.47261 * 60.00428 * 15 14 12 32 32 H 1.07996 * 120.44927 * 180.23295 * 18 17 16 33 33 H 1.08006 * 120.79878 * 179.77533 * 19 18 17 34 34 H 1.07995 * 120.45022 * 180.02562 * 20 19 18 35 35 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 36 36 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 37 37 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 38 38 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 6 3.0416 -4.6301 5.6206 16 6 4.3163 -4.9311 6.3662 17 7 4.8610 -6.1255 6.2493 18 6 5.9824 -6.4245 6.8852 19 6 6.5773 -5.4654 7.6896 20 6 5.9722 -4.2227 7.7915 21 7 4.8538 -3.9946 7.1218 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 2.4567 -3.9010 6.1814 31 1 2.4637 -5.5469 5.5035 32 1 6.4255 -7.4040 6.7823 33 1 7.4909 -5.6811 8.2239 34 1 6.4076 -3.4509 8.4087 35 1 2.3246 -3.3504 -1.6826 36 1 1.5428 -4.6177 -0.5940 37 1 -0.6578 -3.3605 -0.7110 38 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583968461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:50 Heat of formation + Delta-G solvation = 24.258603 kcal Electronic energy + Delta-G solvation = -20143.190676 eV Core-core repulsion = 16986.228496 eV Total energy + Delta-G solvation = -3156.962180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23024 -39.09086 -36.70726 -34.25059 -33.91332 -33.25965 -31.95702 -30.95732 -26.99264 -25.59531 -24.76615 -24.53395 -22.16241 -21.13396 -19.69899 -19.19417 -17.75479 -17.32479 -16.62737 -16.02476 -15.37396 -15.26242 -15.21636 -14.70483 -14.59043 -13.90393 -13.79374 -13.51425 -13.07056 -12.72041 -12.50036 -12.03607 -11.74429 -11.55720 -11.10601 -11.04034 -10.98421 -10.96475 -10.92874 -10.54156 -10.22827 -9.79968 -9.59545 -9.43669 -9.25201 -9.03371 -8.48436 -8.25417 -8.07207 -6.06866 -4.16954 0.64220 0.86034 3.22086 3.27401 3.33470 3.34645 3.46607 3.65112 3.95555 4.06178 4.33704 4.35810 4.72778 4.83269 4.99796 5.15271 5.19450 5.21056 5.33311 5.48961 5.53247 5.73301 6.01682 6.02661 6.05790 6.25648 6.35315 6.49017 6.58192 6.71764 6.78101 6.89345 7.13166 7.29699 7.41040 7.54314 7.81347 7.90812 8.30374 8.34597 8.83592 8.89060 9.50262 11.00269 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.003623 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.973766 B = 7725.681625 C = 8396.534142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.163 3.837 11 N -0.703 5.703 12 C 0.507 3.493 13 O -0.558 6.558 14 C -0.131 4.131 15 C -0.037 4.037 16 C 0.327 3.673 17 N -0.516 5.516 18 C 0.148 3.852 19 C -0.240 4.240 20 C 0.149 3.851 21 N -0.514 5.514 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.262 0.738 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.401 0.599 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.146 0.854 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.647 -9.870 12.077 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.024 3.976 10 C 0.040 3.960 11 N -0.352 5.352 12 C 0.292 3.708 13 O -0.438 6.438 14 C -0.172 4.172 15 C -0.076 4.076 16 C 0.060 3.940 17 N -0.229 5.229 18 C -0.018 4.018 19 C -0.262 4.262 20 C -0.017 4.017 21 N -0.228 5.228 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.235 0.765 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.185 0.815 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.838 -9.682 12.007 18.851 hybrid contribution 1.828 0.869 0.246 2.039 sum 12.666 -8.813 12.253 19.703 Atomic orbital electron populations 1.69978 1.05882 1.26993 1.48183 1.24985 0.94821 0.98950 0.94292 0.86690 0.79668 0.83192 0.78625 1.20306 1.21254 1.20124 1.20314 0.92587 0.88624 1.52385 0.92273 1.19036 0.99365 0.93276 0.85968 1.20998 0.84162 0.97929 0.92934 1.45984 1.11316 1.62719 1.15135 1.20323 0.90516 0.77832 0.82090 1.90661 1.31015 1.54154 1.67922 1.21527 0.97376 1.03035 0.95276 1.20157 0.90032 1.03800 0.93619 1.23377 0.95602 0.84462 0.90553 1.68335 1.11042 1.21114 1.22450 1.23276 0.89832 0.99446 0.89240 1.22904 1.03586 0.96477 1.03201 1.23290 0.89750 0.95583 0.93094 1.68342 1.11292 1.35019 1.08177 1.23020 1.00711 0.95600 1.05513 1.22465 0.90787 1.01315 1.03484 0.92798 0.91450 0.94159 0.76497 0.88978 0.88778 0.88247 0.88315 0.81536 0.83605 0.81516 0.90428 0.91713 0.91822 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.28 12.65 55.43 0.70 -23.58 16 2 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.50 -12.89 8.59 -34.44 -0.30 -13.19 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 10 C 0.16 3.70 5.50 -4.05 -0.02 3.67 16 11 N -0.70 -13.58 5.48 -60.30 -0.33 -13.91 16 12 C 0.51 9.31 7.83 -10.98 -0.09 9.22 16 13 O -0.56 -12.13 15.98 5.56 0.09 -12.04 16 14 C -0.13 -1.83 5.68 -27.89 -0.16 -1.99 16 15 C -0.04 -0.51 4.94 -27.88 -0.14 -0.64 16 16 C 0.33 4.25 6.90 -157.19 -1.08 3.17 16 17 N -0.52 -6.25 10.33 -10.72 -0.11 -6.36 16 18 C 0.15 1.28 11.31 -17.20 -0.19 1.08 16 19 C -0.24 -1.71 10.17 -39.32 -0.40 -2.11 16 20 C 0.15 1.32 11.31 -17.20 -0.19 1.13 16 21 N -0.51 -6.41 10.33 -10.72 -0.11 -6.52 16 22 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 23 C -0.14 -3.28 9.14 -26.69 -0.24 -3.53 16 24 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 25 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 26 H 0.04 0.91 8.09 -51.92 -0.42 0.49 16 27 H 0.40 7.09 8.33 -40.82 -0.34 6.75 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 30 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 31 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 32 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.15 0.54 8.06 -52.48 -0.42 0.11 16 34 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -31.47 333.79 -8.54 -40.01 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.37 Total: 7.48 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.41 Total: -5.66 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.15 Total: -50.36 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.47 -8.54 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583968461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.265 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds