Wall clock time and date at job start Mon Mar 30 2020 02:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21277 * 119.99535 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00135 * 180.02562 * 12 11 10 15 15 C 1.52994 * 109.47153 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.47009 * 180.02562 * 15 14 12 17 17 N 1.31795 * 119.12263 * 269.72985 * 16 15 14 18 18 C 1.32338 * 120.81805 * 179.76315 * 17 16 15 19 19 C 1.38592 * 119.09959 * 0.50335 * 18 17 16 20 20 C 1.38600 * 118.40542 * 359.75478 * 19 18 17 21 21 N 1.31794 * 119.12242 * 90.00231 * 16 15 14 22 22 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 23 23 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 24 24 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 25 25 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 26 26 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 27 27 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 28 28 H 1.09005 * 109.47562 * 300.00761 * 14 12 11 29 29 H 1.09009 * 109.47031 * 60.00195 * 14 12 11 30 30 H 1.09003 * 109.47333 * 300.00142 * 15 14 12 31 31 H 1.09002 * 109.47261 * 60.00428 * 15 14 12 32 32 H 1.07996 * 120.44927 * 180.23295 * 18 17 16 33 33 H 1.08006 * 120.79878 * 179.77533 * 19 18 17 34 34 H 1.07995 * 120.45022 * 180.02562 * 20 19 18 35 35 H 1.09003 * 117.50034 * 359.97438 * 22 9 7 36 36 H 1.09002 * 117.49971 * 145.02730 * 22 9 7 37 37 H 1.08996 * 117.49810 * 214.97781 * 23 9 7 38 38 H 1.08995 * 117.50078 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0319 -3.9776 4.0171 14 6 3.3798 -4.0606 4.2415 15 6 3.0416 -4.6301 5.6206 16 6 4.3163 -4.9311 6.3662 17 7 4.8610 -6.1255 6.2493 18 6 5.9824 -6.4245 6.8852 19 6 6.5773 -5.4654 7.6896 20 6 5.9722 -4.2227 7.7915 21 7 4.8538 -3.9946 7.1218 22 6 1.5730 -3.5803 -0.9273 23 6 0.2453 -2.8218 -0.9979 24 1 -0.4850 0.8369 -0.0732 25 1 0.3749 -2.1616 2.0428 26 1 0.3013 -3.8500 1.4840 27 1 3.0162 -3.0718 1.8342 28 1 3.9646 -4.7900 3.6810 29 1 3.9580 -3.1439 4.3583 30 1 2.4567 -3.9010 6.1814 31 1 2.4637 -5.5469 5.5035 32 1 6.4255 -7.4040 6.7823 33 1 7.4909 -5.6811 8.2239 34 1 6.4076 -3.4509 8.4087 35 1 2.3246 -3.3504 -1.6826 36 1 1.5428 -4.6177 -0.5940 37 1 -0.6578 -3.3605 -0.7110 38 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583968461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:50 Heat of formation + Delta-G solvation = 3.792057 kcal Electronic energy + Delta-G solvation = -20144.078172 eV Core-core repulsion = 16986.228496 eV Total energy + Delta-G solvation = -3157.849676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98488 -40.64305 -38.49482 -35.23994 -34.93507 -34.66272 -33.94802 -31.88238 -28.53339 -27.41581 -25.88234 -25.44432 -23.16151 -22.87005 -21.37192 -20.90584 -18.52969 -18.49068 -18.06317 -17.35899 -16.76056 -16.66545 -16.46338 -16.07885 -15.79861 -15.48155 -14.95463 -14.57519 -14.38833 -14.24441 -13.80632 -13.55459 -13.40417 -13.11378 -12.92816 -12.79013 -12.38232 -12.16459 -12.01738 -11.83521 -11.76683 -11.41899 -10.96146 -10.92131 -10.44692 -10.40864 -10.19030 -10.03004 -9.82572 -8.08578 -6.23145 -0.07188 0.19480 1.43847 1.45819 1.51847 1.72738 2.30149 2.43512 2.81251 2.98542 3.19391 3.27809 3.52168 3.79925 3.80967 4.10848 4.12811 4.22591 4.25939 4.29453 4.52830 4.56089 4.62344 4.66773 4.73742 4.78297 5.00550 5.02592 5.03836 5.05837 5.29434 5.49026 5.56663 5.61214 5.71564 5.78799 6.10250 6.37295 6.76219 6.85297 7.15051 7.37738 7.46877 8.98229 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021939 B = 0.003623 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.973766 B = 7725.681625 C = 8396.534142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.003 3.997 10 C 0.178 3.822 11 N -0.700 5.700 12 C 0.506 3.494 13 O -0.595 6.595 14 C -0.113 4.113 15 C -0.031 4.031 16 C 0.307 3.693 17 N -0.540 5.540 18 C 0.136 3.864 19 C -0.217 4.217 20 C 0.134 3.866 21 N -0.544 5.544 22 C -0.177 4.177 23 C -0.154 4.154 24 H 0.259 0.741 25 H 0.026 0.974 26 H 0.038 0.962 27 H 0.411 0.589 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.201 0.799 33 H 0.189 0.811 34 H 0.197 0.803 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.899 -10.829 12.915 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.002 3.998 10 C 0.054 3.946 11 N -0.349 5.349 12 C 0.294 3.706 13 O -0.477 6.477 14 C -0.154 4.154 15 C -0.070 4.070 16 C 0.040 3.960 17 N -0.254 5.254 18 C -0.029 4.029 19 C -0.238 4.238 20 C -0.030 4.030 21 N -0.259 5.259 22 C -0.214 4.214 23 C -0.193 4.193 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.247 0.753 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.217 0.783 33 H 0.206 0.794 34 H 0.214 0.786 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.143 -10.651 12.846 21.875 hybrid contribution 0.891 1.096 0.064 1.414 sum 15.034 -9.555 12.910 21.999 Atomic orbital electron populations 1.70108 1.07270 1.27373 1.49779 1.25712 0.95483 1.02105 0.94370 0.85743 0.78395 0.79402 0.78864 1.19393 1.21749 1.19687 1.20653 0.92985 0.89572 1.51203 0.91763 1.19066 1.00172 0.93946 0.86573 1.20567 0.85238 0.96303 0.92494 1.45886 1.10601 1.62905 1.15516 1.21078 0.91579 0.76434 0.81520 1.90643 1.32957 1.55478 1.68584 1.21428 0.94838 1.04099 0.95042 1.19960 0.90909 1.02728 0.93446 1.22964 0.95757 0.85397 0.91925 1.68281 1.12676 1.20711 1.23763 1.23947 0.88888 1.01253 0.88796 1.23339 1.04045 0.94948 1.01496 1.23918 0.88886 0.97378 0.92864 1.68277 1.13041 1.35515 1.09066 1.23003 0.98863 0.95936 1.03625 1.22387 0.92116 1.01824 1.02938 0.93214 0.95595 0.94340 0.75321 0.86826 0.87646 0.89951 0.89342 0.78269 0.79421 0.78585 0.89664 0.89374 0.91322 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 12.65 21.45 0.27 -51.34 16 2 C 0.02 1.28 5.43 84.65 0.46 1.74 16 3 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.51 -25.91 8.59 25.60 0.22 -25.69 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.15 1.47 -52.93 -0.08 0.07 16 10 C 0.18 8.24 5.50 86.38 0.48 8.71 16 11 N -0.70 -26.88 5.48 -463.07 -2.54 -29.42 16 12 C 0.51 18.67 7.83 87.66 0.69 19.36 16 13 O -0.59 -26.61 15.98 -3.02 -0.05 -26.65 16 14 C -0.11 -3.09 5.68 29.85 0.17 -2.92 16 15 C -0.03 -0.86 4.94 29.85 0.15 -0.71 16 16 C 0.31 7.79 6.90 138.75 0.96 8.74 16 17 N -0.54 -12.28 10.33 -187.84 -1.94 -14.22 16 18 C 0.14 1.94 11.31 84.70 0.96 2.89 16 19 C -0.22 -2.26 10.17 22.44 0.23 -2.03 16 20 C 0.13 2.02 11.31 84.70 0.96 2.98 16 21 N -0.54 -12.96 10.33 -187.84 -1.94 -14.90 16 22 C -0.18 -7.12 9.96 30.62 0.30 -6.81 16 23 C -0.15 -7.15 9.14 30.62 0.28 -6.87 16 24 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.76 8.09 -2.38 -0.02 1.74 16 27 H 0.41 14.06 8.33 -92.71 -0.77 13.29 16 28 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.08 2.51 8.10 -2.39 -0.02 2.49 16 31 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 32 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 34 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -69.82 333.79 1.89 -67.94 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.29 Total: 24.80 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.77 Total: -0.54 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.15 Total: -109.89 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.65 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.82 1.89 -67.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583968461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.729 kcal (2) G-P(sol) polarization free energy of solvation -69.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds