Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99792 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99859 * 3 2 1 6 6 H 1.48505 * 109.47217 * 149.99846 * 3 2 1 7 7 C 1.38815 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99941 * 197.35602 * 7 2 1 9 9 N 1.36940 * 119.99606 * 17.36406 * 7 2 1 10 10 C 1.46934 * 120.62509 * 207.69280 * 9 7 2 11 11 C 1.53184 * 108.77086 * 233.58398 * 10 9 7 12 12 C 1.53040 * 109.34143 * 305.37868 * 11 10 9 13 13 C 1.53040 * 109.53441 * 61.32199 * 12 11 10 14 14 H 1.08999 * 109.49936 * 58.65152 * 13 12 11 15 15 N 1.46509 * 109.49374 * 178.71403 * 13 12 11 16 16 C 1.34778 * 119.99900 * 204.93422 * 15 13 12 17 17 O 1.21557 * 119.99702 * 0.02562 * 16 15 13 18 18 C 1.47834 * 120.00226 * 180.02562 * 16 15 13 19 19 C 1.40018 * 120.56175 * 180.27781 * 18 16 15 20 20 C 1.38363 * 118.28979 * 180.26009 * 19 18 16 21 21 C 1.38356 * 119.30135 * 359.46375 * 20 19 18 22 22 N 1.31926 * 121.07939 * 0.27173 * 21 20 19 23 23 C 1.31700 * 121.87892 * 0.02562 * 22 21 20 24 24 C 1.46921 * 120.63206 * 27.66865 * 9 7 2 25 25 H 0.97003 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.58392 * 353.37443 * 10 9 7 27 27 H 1.09003 * 109.58337 * 113.79412 * 10 9 7 28 28 H 1.08995 * 109.50139 * 65.32227 * 11 10 9 29 29 H 1.09004 * 109.49578 * 185.38302 * 11 10 9 30 30 H 1.08992 * 109.43389 * 301.31170 * 12 11 10 31 31 H 1.09001 * 109.48338 * 181.35402 * 12 11 10 32 32 H 0.96998 * 119.99880 * 24.93266 * 15 13 12 33 33 H 1.08003 * 120.85623 * 0.02562 * 19 18 16 34 34 H 1.08000 * 120.35096 * 179.73325 * 20 19 18 35 35 H 1.07994 * 119.46187 * 180.25669 * 21 20 19 36 36 H 1.08005 * 119.71487 * 180.02562 * 23 22 21 37 37 H 1.08990 * 109.59015 * 6.62545 * 24 9 7 38 38 H 1.09007 * 109.70407 * 246.26916 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3529 10 6 1.8192 -3.6547 0.1821 11 6 2.0741 -4.6104 -0.9876 12 6 0.8188 -4.6906 -1.8594 13 6 0.5006 -3.3055 -2.4271 14 1 1.3488 -2.9478 -3.0107 15 7 -0.6834 -3.3893 -3.2860 16 6 -0.8705 -2.4831 -4.2659 17 8 -0.0568 -1.5965 -4.4373 18 6 -2.0654 -2.5673 -5.1323 19 6 -2.2686 -1.6355 -6.1574 20 6 -3.4058 -1.7552 -6.9365 21 6 -4.2915 -2.7885 -6.6874 22 7 -4.0713 -3.6554 -5.7177 23 6 -3.0070 -3.5799 -4.9457 24 6 0.2278 -2.3349 -1.2737 25 1 -0.4850 0.8401 0.0004 26 1 2.7399 -3.5171 0.7490 27 1 1.0468 -4.0684 0.8305 28 1 2.9079 -4.2408 -1.5844 29 1 2.3138 -5.6014 -0.6021 30 1 -0.0201 -5.0374 -1.2561 31 1 0.9894 -5.3886 -2.6790 32 1 -1.3325 -4.0971 -3.1494 33 1 -1.5579 -0.8414 -6.3331 34 1 -3.5978 -1.0521 -7.7335 35 1 -5.1778 -2.8868 -7.2966 36 1 -2.8612 -4.3088 -4.1621 37 1 0.0985 -1.3268 -1.6673 38 1 -0.6758 -2.6396 -0.7457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586058421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = 20.543455 kcal Electronic energy + Delta-G solvation = -21189.713335 eV Core-core repulsion = 18032.590054 eV Total energy + Delta-G solvation = -3157.123281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55221 -38.99951 -37.24517 -34.25475 -32.78343 -32.58397 -31.59841 -30.01924 -28.72609 -25.27770 -24.64736 -23.61424 -22.24430 -21.83815 -20.25574 -19.42416 -17.90807 -16.89213 -16.71371 -16.38366 -15.22484 -15.02824 -14.81644 -14.51467 -14.04356 -13.69906 -13.64298 -13.37211 -13.17790 -12.98816 -12.43376 -12.38988 -12.24978 -11.87853 -11.02389 -10.79420 -10.73185 -10.49615 -10.25977 -10.14113 -10.02408 -9.94480 -9.86534 -9.53861 -9.36979 -9.33216 -8.59715 -8.43004 -6.66524 -5.75635 -3.18945 0.58737 1.07718 3.04215 3.37802 3.44280 3.50106 3.50605 3.85345 4.15485 4.53968 4.63347 4.73577 4.82772 4.94350 5.25922 5.32007 5.38427 5.45050 5.53356 5.61796 5.66847 5.91386 5.98433 6.06634 6.12980 6.31788 6.40316 6.41589 6.46797 6.67937 6.75554 6.87578 6.95411 7.27815 7.68504 7.71791 7.80482 7.86137 8.46943 8.52736 9.22823 9.86887 10.41476 11.32386 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.005313 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.310923 B = 5268.474325 C = 6351.844445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.117 3.883 14 H 0.084 0.916 15 N -0.713 5.713 16 C 0.556 3.444 17 O -0.525 6.525 18 C -0.175 4.175 19 C -0.020 4.020 20 C -0.180 4.180 21 C 0.113 3.887 22 N -0.489 5.489 23 C 0.131 3.869 24 C 0.166 3.834 25 H 0.254 0.746 26 H 0.056 0.944 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.392 0.608 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -8.946 -11.329 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.155 4.155 13 C 0.012 3.988 14 H 0.102 0.898 15 N -0.363 5.363 16 C 0.341 3.659 17 O -0.401 6.401 18 C -0.180 4.180 19 C -0.046 4.046 20 C -0.200 4.200 21 C -0.044 4.044 22 N -0.198 5.198 23 C -0.027 4.027 24 C 0.039 3.961 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.226 0.774 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.113 0.887 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.362 -8.819 -11.255 15.650 hybrid contribution 0.564 1.216 -0.097 1.344 sum -5.798 -7.603 -11.352 14.842 Atomic orbital electron populations 1.70019 1.05355 1.25559 1.53392 1.25032 0.95258 0.98498 1.00439 0.86296 0.79083 0.83611 0.77823 1.21258 1.21771 1.20375 1.19171 0.92785 0.84817 1.41912 0.91511 1.43966 1.35990 1.01674 1.49466 1.20964 0.97762 0.86837 0.92880 1.21999 0.96927 0.99389 0.98744 1.21682 0.99044 0.95910 0.98830 1.22042 0.86761 0.97104 0.92941 0.89812 1.46008 1.26407 1.30672 1.33248 1.17970 0.85194 0.82281 0.80449 1.90827 1.44973 1.33788 1.70554 1.21192 0.98062 0.99168 0.99598 1.21800 0.95916 0.96142 0.90764 1.22163 0.95584 1.00518 1.01702 1.22955 0.98198 0.89800 0.93451 1.67688 1.20154 1.26678 1.05257 1.22990 0.88492 0.95095 0.96157 1.21096 0.88811 0.98970 0.87246 0.93650 0.92580 0.96355 0.92094 0.92551 0.92155 0.92997 0.77435 0.83446 0.84127 0.82396 0.82423 0.88681 0.96404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 11.19 55.49 0.62 -26.34 16 2 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 3 Si 0.90 22.57 29.59 -169.99 -5.03 17.54 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -7.25 9.59 -15.06 -0.14 -7.39 16 8 H 0.07 1.84 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -14.94 2.99 -172.33 -0.52 -15.46 16 10 C 0.14 2.93 6.52 -3.71 -0.02 2.90 16 11 C -0.13 -2.18 6.08 -26.62 -0.16 -2.35 16 12 C -0.12 -1.84 5.36 -26.69 -0.14 -1.99 16 13 C 0.12 2.25 2.60 -67.81 -0.18 2.08 16 14 H 0.08 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.71 -11.57 5.04 -54.63 -0.28 -11.84 16 16 C 0.56 9.86 7.75 -12.33 -0.10 9.76 16 17 O -0.52 -11.65 16.08 5.32 0.09 -11.57 16 18 C -0.17 -2.48 5.89 -104.83 -0.62 -3.10 16 19 C -0.02 -0.25 9.72 -38.87 -0.38 -0.63 16 20 C -0.18 -1.75 10.10 -39.49 -0.40 -2.15 16 21 C 0.11 1.11 11.17 -17.47 -0.20 0.92 16 22 N -0.49 -5.92 10.35 -12.91 -0.13 -6.05 16 23 C 0.13 1.60 10.71 -17.13 -0.18 1.42 16 24 C 0.17 4.04 4.89 -3.72 -0.02 4.02 16 25 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.39 4.91 6.67 -40.82 -0.27 4.64 16 33 H 0.15 1.88 7.74 -52.48 -0.41 1.48 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.54 6.42 -52.48 -0.34 1.21 16 37 H 0.10 2.74 6.04 -51.93 -0.31 2.42 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -34.01 315.37 -8.18 -42.19 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.07 Total: 3.17 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.62 Total: 3.61 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.30 Total: -59.70 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.01 -8.18 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586058421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.736 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds