Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99792 * 3 2 1 5 5 H 1.48499 * 109.47206 * 29.99859 * 3 2 1 6 6 H 1.48505 * 109.47217 * 149.99846 * 3 2 1 7 7 C 1.38815 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99941 * 197.35602 * 7 2 1 9 9 N 1.36940 * 119.99606 * 17.36406 * 7 2 1 10 10 C 1.46934 * 120.62509 * 207.69280 * 9 7 2 11 11 C 1.53184 * 108.77086 * 233.58398 * 10 9 7 12 12 C 1.53040 * 109.34143 * 305.37868 * 11 10 9 13 13 C 1.53040 * 109.53441 * 61.32199 * 12 11 10 14 14 H 1.08999 * 109.49936 * 58.65152 * 13 12 11 15 15 N 1.46509 * 109.49374 * 178.71403 * 13 12 11 16 16 C 1.34778 * 119.99900 * 204.93422 * 15 13 12 17 17 O 1.21557 * 119.99702 * 0.02562 * 16 15 13 18 18 C 1.47834 * 120.00226 * 180.02562 * 16 15 13 19 19 C 1.40018 * 120.56175 * 180.27781 * 18 16 15 20 20 C 1.38363 * 118.28979 * 180.26009 * 19 18 16 21 21 C 1.38356 * 119.30135 * 359.46375 * 20 19 18 22 22 N 1.31926 * 121.07939 * 0.27173 * 21 20 19 23 23 C 1.31700 * 121.87892 * 0.02562 * 22 21 20 24 24 C 1.46921 * 120.63206 * 27.66865 * 9 7 2 25 25 H 0.97003 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.58392 * 353.37443 * 10 9 7 27 27 H 1.09003 * 109.58337 * 113.79412 * 10 9 7 28 28 H 1.08995 * 109.50139 * 65.32227 * 11 10 9 29 29 H 1.09004 * 109.49578 * 185.38302 * 11 10 9 30 30 H 1.08992 * 109.43389 * 301.31170 * 12 11 10 31 31 H 1.09001 * 109.48338 * 181.35402 * 12 11 10 32 32 H 0.96998 * 119.99880 * 24.93266 * 15 13 12 33 33 H 1.08003 * 120.85623 * 0.02562 * 19 18 16 34 34 H 1.08000 * 120.35096 * 179.73325 * 20 19 18 35 35 H 1.07994 * 119.46187 * 180.25669 * 21 20 19 36 36 H 1.08005 * 119.71487 * 180.02562 * 23 22 21 37 37 H 1.08990 * 109.59015 * 6.62545 * 24 9 7 38 38 H 1.09007 * 109.70407 * 246.26916 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3529 10 6 1.8192 -3.6547 0.1821 11 6 2.0741 -4.6104 -0.9876 12 6 0.8188 -4.6906 -1.8594 13 6 0.5006 -3.3055 -2.4271 14 1 1.3488 -2.9478 -3.0107 15 7 -0.6834 -3.3893 -3.2860 16 6 -0.8705 -2.4831 -4.2659 17 8 -0.0568 -1.5965 -4.4373 18 6 -2.0654 -2.5673 -5.1323 19 6 -2.2686 -1.6355 -6.1574 20 6 -3.4058 -1.7552 -6.9365 21 6 -4.2915 -2.7885 -6.6874 22 7 -4.0713 -3.6554 -5.7177 23 6 -3.0070 -3.5799 -4.9457 24 6 0.2278 -2.3349 -1.2737 25 1 -0.4850 0.8401 0.0004 26 1 2.7399 -3.5171 0.7490 27 1 1.0468 -4.0684 0.8305 28 1 2.9079 -4.2408 -1.5844 29 1 2.3138 -5.6014 -0.6021 30 1 -0.0201 -5.0374 -1.2561 31 1 0.9894 -5.3886 -2.6790 32 1 -1.3325 -4.0971 -3.1494 33 1 -1.5579 -0.8414 -6.3331 34 1 -3.5978 -1.0521 -7.7335 35 1 -5.1778 -2.8868 -7.2966 36 1 -2.8612 -4.3088 -4.1621 37 1 0.0985 -1.3268 -1.6673 38 1 -0.6758 -2.6396 -0.7457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586058421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -3.656997 kcal Electronic energy + Delta-G solvation = -21190.762745 eV Core-core repulsion = 18032.590054 eV Total energy + Delta-G solvation = -3158.172691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.65678 -40.29806 -38.86597 -35.92462 -34.54043 -33.55173 -32.69391 -31.85996 -30.25969 -27.26723 -25.77133 -24.54593 -23.96679 -23.34335 -21.66299 -21.00900 -19.08820 -18.76045 -17.84170 -17.51015 -16.92285 -16.44352 -16.10174 -15.96043 -15.64585 -15.31062 -14.92323 -14.69446 -14.51696 -14.17671 -14.15639 -13.99173 -13.51456 -13.16259 -12.95135 -12.71336 -12.52839 -12.27156 -12.05213 -11.73957 -11.64553 -11.29835 -11.20380 -10.98671 -10.58779 -10.49941 -10.32746 -10.08141 -8.71773 -7.91582 -5.37241 -0.38457 0.17575 1.39211 1.44502 1.50559 1.80738 2.07424 2.47502 2.84101 3.24131 3.29996 3.64894 3.78252 3.80471 3.90410 3.95282 4.04373 4.13091 4.25902 4.42447 4.47171 4.59922 4.64675 4.81473 4.90754 4.99892 5.08610 5.09921 5.19866 5.21416 5.31248 5.39513 5.51797 5.56787 5.60188 5.74938 6.33718 6.50971 6.81308 7.09092 7.19371 7.83025 8.31772 9.13258 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.005313 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.310923 B = 5268.474325 C = 6351.844445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.961 3.039 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.265 4.265 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.131 3.869 14 H 0.053 0.947 15 N -0.700 5.700 16 C 0.553 3.447 17 O -0.582 6.582 18 C -0.199 4.199 19 C -0.036 4.036 20 C -0.167 4.167 21 C 0.121 3.879 22 N -0.504 5.504 23 C 0.136 3.864 24 C 0.177 3.823 25 H 0.247 0.753 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.412 0.588 33 H 0.136 0.864 34 H 0.177 0.823 35 H 0.199 0.801 36 H 0.178 0.822 37 H 0.043 0.957 38 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 -11.089 -12.521 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.246 4.246 3 Si 0.789 3.211 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.145 4.145 13 C 0.025 3.975 14 H 0.071 0.929 15 N -0.352 5.352 16 C 0.340 3.660 17 O -0.463 6.463 18 C -0.205 4.205 19 C -0.063 4.063 20 C -0.187 4.187 21 C -0.035 4.035 22 N -0.213 5.213 23 C -0.022 4.022 24 C 0.050 3.950 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.250 0.750 33 H 0.154 0.846 34 H 0.194 0.806 35 H 0.216 0.784 36 H 0.195 0.805 37 H 0.061 0.939 38 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -7.269 -11.033 -12.434 18.143 hybrid contribution 0.772 1.855 0.225 2.022 sum -6.497 -9.178 -12.209 16.598 Atomic orbital electron populations 1.70174 1.06732 1.25603 1.55243 1.25785 0.96024 1.01590 1.01155 0.85350 0.78636 0.79861 0.77205 1.22193 1.21738 1.18459 1.19539 0.93126 0.86244 1.40664 0.91269 1.44255 1.35958 1.02776 1.50380 1.21197 0.97598 0.85532 0.94688 1.21901 0.96960 1.00210 0.97008 1.21662 0.99261 0.93684 0.99943 1.21572 0.86745 0.98275 0.90952 0.92897 1.45802 1.26072 1.31005 1.32289 1.18601 0.85595 0.81212 0.80557 1.90789 1.47249 1.36042 1.72229 1.20961 0.97594 1.01465 1.00444 1.21941 0.97176 0.95865 0.91325 1.22511 0.93807 1.00878 1.01475 1.23685 0.98899 0.88461 0.92457 1.67804 1.19839 1.27592 1.06035 1.23212 0.87884 0.94577 0.96504 1.20795 0.88188 0.97548 0.88467 0.94415 0.92607 0.95926 0.93018 0.88263 0.90457 0.89392 0.74979 0.84643 0.80565 0.78402 0.80497 0.93880 0.98079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.55 11.19 21.65 0.24 -58.31 16 2 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 3 Si 0.96 47.97 29.59 68.60 2.03 50.00 16 4 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.27 -15.37 9.59 84.03 0.81 -14.57 16 8 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 9 N -0.61 -31.74 2.99 -699.12 -2.09 -33.84 16 10 C 0.13 5.44 6.52 86.36 0.56 6.01 16 11 C -0.12 -3.74 6.08 30.67 0.19 -3.55 16 12 C -0.11 -3.12 5.36 30.62 0.16 -2.95 16 13 C 0.13 5.11 2.60 45.07 0.12 5.23 16 14 H 0.05 2.42 7.58 -2.39 -0.02 2.40 16 15 N -0.70 -22.85 5.04 -445.03 -2.24 -25.09 16 16 C 0.55 20.41 7.75 86.78 0.67 21.08 16 17 O -0.58 -27.70 16.08 -3.89 -0.06 -27.76 16 18 C -0.20 -5.67 5.89 -20.00 -0.12 -5.79 16 19 C -0.04 -0.92 9.72 22.73 0.22 -0.70 16 20 C -0.17 -2.83 10.10 22.33 0.23 -2.60 16 21 C 0.12 1.97 11.17 84.71 0.95 2.91 16 22 N -0.50 -10.84 10.35 -194.75 -2.01 -12.85 16 23 C 0.14 3.12 10.71 85.02 0.91 4.03 16 24 C 0.18 8.99 4.89 86.36 0.42 9.42 16 25 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.41 9.79 6.67 -92.71 -0.62 9.17 16 33 H 0.14 3.67 7.74 -2.91 -0.02 3.64 16 34 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.18 3.10 6.42 -2.91 -0.02 3.09 16 37 H 0.04 2.64 6.04 -2.39 -0.01 2.62 16 38 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 Total: -1.00 -79.66 315.37 1.85 -77.82 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.45 Total: 14.08 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.53 Total: 15.95 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -6.11 Total: -130.09 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.06 Total: -27.76 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -79.66 1.85 -77.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586058421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.158 kcal (2) G-P(sol) polarization free energy of solvation -79.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds