Wall clock time and date at job start Mon Mar 30 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00413 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00483 * 3 2 1 5 5 H 1.48499 * 109.46855 * 30.00332 * 3 2 1 6 6 H 1.48495 * 109.47349 * 150.00216 * 3 2 1 7 7 C 1.38814 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00321 * 197.36402 * 7 2 1 9 9 N 1.36939 * 119.99620 * 17.35621 * 7 2 1 10 10 C 1.46925 * 120.62943 * 207.66929 * 9 7 2 11 11 C 1.53195 * 108.77435 * 233.63229 * 10 9 7 12 12 C 1.53043 * 109.31294 * 305.36439 * 11 10 9 13 13 C 1.53040 * 109.53668 * 61.36634 * 12 11 10 14 14 H 1.09000 * 109.52542 * 58.60187 * 13 12 11 15 15 N 1.46507 * 109.49897 * 178.68315 * 13 12 11 16 16 C 1.34769 * 120.00316 * 204.83390 * 15 13 12 17 17 O 1.21522 * 119.99752 * 0.02562 * 16 15 13 18 18 C 1.48148 * 120.00490 * 179.97438 * 16 15 13 19 19 C 1.39821 * 120.91515 * 359.72315 * 18 16 15 20 20 C 1.38153 * 118.99486 * 179.72589 * 19 18 16 21 21 N 1.31813 * 120.89737 * 0.56102 * 20 19 18 22 22 C 1.31813 * 122.05046 * 359.71818 * 21 20 19 23 23 C 1.38146 * 120.89387 * 359.97438 * 22 21 20 24 24 C 1.46928 * 120.62919 * 27.69316 * 9 7 2 25 25 H 0.97006 * 120.00095 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.58847 * 353.41944 * 10 9 7 27 27 H 1.09002 * 109.58883 * 113.70480 * 10 9 7 28 28 H 1.08998 * 109.49940 * 65.31431 * 11 10 9 29 29 H 1.09000 * 109.49613 * 185.38477 * 11 10 9 30 30 H 1.08999 * 109.46337 * 301.34923 * 12 11 10 31 31 H 1.09001 * 109.46010 * 181.38673 * 12 11 10 32 32 H 0.97005 * 119.99418 * 24.84249 * 15 13 12 33 33 H 1.07993 * 120.50345 * 359.97438 * 19 18 16 34 34 H 1.08001 * 119.54888 * 180.27684 * 20 19 18 35 35 H 1.07995 * 119.55115 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.50187 * 179.97438 * 23 22 21 37 37 H 1.08993 * 109.58837 * 6.58170 * 24 9 7 38 38 H 1.09000 * 109.70125 * 246.22409 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0532 -1.2236 0.2786 9 7 1.3723 -2.3609 -0.3548 10 6 1.8194 -3.6548 0.1785 11 6 2.0751 -4.6090 -0.9924 12 6 0.8196 -4.6884 -1.8640 13 6 0.5014 -3.3029 -2.4306 14 1 1.3497 -2.9441 -3.0135 15 7 -0.6823 -3.3860 -3.2900 16 6 -0.8703 -2.4778 -4.2678 17 8 -0.0577 -1.5901 -4.4369 18 6 -2.0669 -2.5621 -5.1371 19 6 -3.0104 -3.5793 -4.9639 20 6 -4.1146 -3.6169 -5.7934 21 7 -4.2783 -2.7180 -6.7435 22 6 -3.4104 -1.7465 -6.9444 23 6 -2.2812 -1.6301 -6.1570 24 6 0.2279 -2.3338 -1.2760 25 1 -0.4850 0.8401 0.0004 26 1 2.7399 -3.5178 0.7458 27 1 1.0481 -4.0686 0.8281 28 1 2.9089 -4.2382 -1.5885 29 1 2.3150 -5.6004 -0.6081 30 1 -0.0196 -5.0357 -1.2612 31 1 0.9904 -5.3857 -2.6842 32 1 -1.3307 -4.0947 -3.1550 33 1 -2.8802 -4.3219 -4.1907 34 1 -4.8513 -4.3960 -5.6645 35 1 -3.5844 -1.0318 -7.7351 36 1 -1.5740 -0.8318 -6.3275 37 1 0.0984 -1.3252 -1.6683 38 1 -0.6757 -2.6396 -0.7486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586059034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:59 Heat of formation + Delta-G solvation = 21.098845 kcal Electronic energy + Delta-G solvation = -21177.841967 eV Core-core repulsion = 18020.742769 eV Total energy + Delta-G solvation = -3157.099197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54911 -39.06540 -37.29166 -34.29996 -32.97840 -32.45262 -31.35291 -30.06034 -28.86708 -25.30339 -24.81371 -23.54926 -22.27502 -21.88503 -20.30036 -19.49501 -17.99929 -16.85124 -16.51595 -15.80375 -15.37201 -15.25344 -14.94288 -14.52573 -14.06002 -13.89880 -13.74217 -13.60426 -13.35854 -13.02156 -12.45888 -12.35975 -11.94078 -11.79714 -11.04883 -10.83284 -10.74475 -10.53366 -10.28173 -10.14913 -9.96954 -9.94780 -9.89324 -9.57802 -9.43744 -9.34549 -8.64993 -8.45096 -6.69007 -5.77671 -3.21064 0.67908 0.95367 3.06058 3.30251 3.42795 3.49097 3.49747 3.83416 4.26095 4.51442 4.57004 4.69107 4.87096 4.95620 5.28192 5.35579 5.38412 5.49842 5.58032 5.59980 5.62152 5.73075 5.98034 6.03366 6.09093 6.28611 6.38090 6.42571 6.45497 6.64240 6.72411 6.83210 6.92590 7.24158 7.68548 7.73598 7.76667 7.83143 8.43317 8.47739 9.20661 9.84702 10.39148 11.30417 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.005290 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.338490 B = 5291.756060 C = 6380.448182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.084 0.916 15 N -0.710 5.710 16 C 0.550 3.450 17 O -0.520 6.520 18 C -0.077 4.077 19 C -0.144 4.144 20 C 0.093 3.907 21 N -0.476 5.476 22 C 0.094 3.906 23 C -0.117 4.117 24 C 0.166 3.834 25 H 0.254 0.746 26 H 0.056 0.944 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.392 0.608 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.095 0.905 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 -10.309 -9.735 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.102 0.898 15 N -0.361 5.361 16 C 0.335 3.665 17 O -0.395 6.395 18 C -0.088 4.088 19 C -0.164 4.164 20 C -0.064 4.064 21 N -0.186 5.186 22 C -0.063 4.063 23 C -0.138 4.138 24 C 0.039 3.961 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.226 0.774 33 H 0.157 0.843 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.166 0.834 37 H 0.113 0.887 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -6.064 -9.558 -10.324 15.320 hybrid contribution 0.728 0.532 0.654 1.114 sum -5.336 -9.025 -9.669 14.263 Atomic orbital electron populations 1.70012 1.05375 1.25604 1.53334 1.25031 0.95259 0.98527 1.00382 0.86293 0.79087 0.83571 0.77850 1.21226 1.21748 1.20363 1.19170 0.92798 0.84824 1.41964 0.91490 1.43961 1.35988 1.01673 1.49452 1.20963 0.97793 0.86830 0.92865 1.22001 0.96902 0.99416 0.98741 1.21680 0.99058 0.95858 0.98824 1.22068 0.86727 0.97173 0.92952 0.89783 1.45998 1.26431 1.30447 1.33229 1.18121 0.85316 0.82439 0.80644 1.90830 1.44779 1.33585 1.70340 1.20589 0.95571 0.96010 0.96637 1.22369 0.95020 0.98485 1.00565 1.22722 0.95995 0.96803 0.90848 1.67542 1.29760 1.02886 1.18383 1.22787 0.89800 0.95501 0.98202 1.22372 0.98616 0.98837 0.93955 1.21096 0.88843 0.98974 0.87209 0.93622 0.92567 0.96353 0.92060 0.92522 0.92176 0.93020 0.77360 0.84345 0.82255 0.82106 0.83378 0.88670 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 11.19 55.49 0.62 -26.23 16 2 C 0.01 0.20 4.91 -17.43 -0.09 0.12 16 3 Si 0.90 22.50 29.59 -169.99 -5.03 17.47 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -7.23 9.58 -15.06 -0.14 -7.38 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 N -0.59 -14.84 2.99 -172.32 -0.52 -15.36 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.87 16 11 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 12 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C 0.12 2.21 2.60 -67.80 -0.18 2.04 16 14 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.71 -11.35 5.04 -54.53 -0.27 -11.62 16 16 C 0.55 9.66 7.76 -12.19 -0.09 9.57 16 17 O -0.52 -11.49 16.11 5.35 0.09 -11.40 16 18 C -0.08 -1.07 5.91 -104.65 -0.62 -1.69 16 19 C -0.14 -1.55 9.62 -39.02 -0.38 -1.93 16 20 C 0.09 0.95 11.17 -17.59 -0.20 0.75 16 21 N -0.48 -5.65 10.33 -13.31 -0.14 -5.79 16 22 C 0.09 1.05 11.17 -17.59 -0.20 0.85 16 23 C -0.12 -1.52 9.68 -39.03 -0.38 -1.90 16 24 C 0.17 4.01 4.89 -3.71 -0.02 3.99 16 25 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.39 4.78 6.75 -40.82 -0.28 4.51 16 33 H 0.14 1.11 6.54 -52.49 -0.34 0.77 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.15 1.91 7.74 -52.48 -0.41 1.51 16 37 H 0.10 2.72 6.03 -51.93 -0.31 2.41 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -33.89 315.57 -8.18 -42.07 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.07 Total: 3.06 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.61 Total: 3.04 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.31 Total: -58.99 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.89 -8.18 -42.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586059034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.169 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds