Wall clock time and date at job start Mon Mar 30 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00413 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00483 * 3 2 1 5 5 H 1.48499 * 109.46855 * 30.00332 * 3 2 1 6 6 H 1.48495 * 109.47349 * 150.00216 * 3 2 1 7 7 C 1.38814 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00321 * 197.36402 * 7 2 1 9 9 N 1.36939 * 119.99620 * 17.35621 * 7 2 1 10 10 C 1.46925 * 120.62943 * 207.66929 * 9 7 2 11 11 C 1.53195 * 108.77435 * 233.63229 * 10 9 7 12 12 C 1.53043 * 109.31294 * 305.36439 * 11 10 9 13 13 C 1.53040 * 109.53668 * 61.36634 * 12 11 10 14 14 H 1.09000 * 109.52542 * 58.60187 * 13 12 11 15 15 N 1.46507 * 109.49897 * 178.68315 * 13 12 11 16 16 C 1.34769 * 120.00316 * 204.83390 * 15 13 12 17 17 O 1.21522 * 119.99752 * 0.02562 * 16 15 13 18 18 C 1.48148 * 120.00490 * 179.97438 * 16 15 13 19 19 C 1.39821 * 120.91515 * 359.72315 * 18 16 15 20 20 C 1.38153 * 118.99486 * 179.72589 * 19 18 16 21 21 N 1.31813 * 120.89737 * 0.56102 * 20 19 18 22 22 C 1.31813 * 122.05046 * 359.71818 * 21 20 19 23 23 C 1.38146 * 120.89387 * 359.97438 * 22 21 20 24 24 C 1.46928 * 120.62919 * 27.69316 * 9 7 2 25 25 H 0.97006 * 120.00095 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.58847 * 353.41944 * 10 9 7 27 27 H 1.09002 * 109.58883 * 113.70480 * 10 9 7 28 28 H 1.08998 * 109.49940 * 65.31431 * 11 10 9 29 29 H 1.09000 * 109.49613 * 185.38477 * 11 10 9 30 30 H 1.08999 * 109.46337 * 301.34923 * 12 11 10 31 31 H 1.09001 * 109.46010 * 181.38673 * 12 11 10 32 32 H 0.97005 * 119.99418 * 24.84249 * 15 13 12 33 33 H 1.07993 * 120.50345 * 359.97438 * 19 18 16 34 34 H 1.08001 * 119.54888 * 180.27684 * 20 19 18 35 35 H 1.07995 * 119.55115 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.50187 * 179.97438 * 23 22 21 37 37 H 1.08993 * 109.58837 * 6.58170 * 24 9 7 38 38 H 1.09000 * 109.70125 * 246.22409 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0532 -1.2236 0.2786 9 7 1.3723 -2.3609 -0.3548 10 6 1.8194 -3.6548 0.1785 11 6 2.0751 -4.6090 -0.9924 12 6 0.8196 -4.6884 -1.8640 13 6 0.5014 -3.3029 -2.4306 14 1 1.3497 -2.9441 -3.0135 15 7 -0.6823 -3.3860 -3.2900 16 6 -0.8703 -2.4778 -4.2678 17 8 -0.0577 -1.5901 -4.4369 18 6 -2.0669 -2.5621 -5.1371 19 6 -3.0104 -3.5793 -4.9639 20 6 -4.1146 -3.6169 -5.7934 21 7 -4.2783 -2.7180 -6.7435 22 6 -3.4104 -1.7465 -6.9444 23 6 -2.2812 -1.6301 -6.1570 24 6 0.2279 -2.3338 -1.2760 25 1 -0.4850 0.8401 0.0004 26 1 2.7399 -3.5178 0.7458 27 1 1.0481 -4.0686 0.8281 28 1 2.9089 -4.2382 -1.5885 29 1 2.3150 -5.6004 -0.6081 30 1 -0.0196 -5.0357 -1.2612 31 1 0.9904 -5.3857 -2.6842 32 1 -1.3307 -4.0947 -3.1550 33 1 -2.8802 -4.3219 -4.1907 34 1 -4.8513 -4.3960 -5.6645 35 1 -3.5844 -1.0318 -7.7351 36 1 -1.5740 -0.8318 -6.3275 37 1 0.0984 -1.3252 -1.6683 38 1 -0.6757 -2.6396 -0.7486 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586059034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:58 Heat of formation + Delta-G solvation = -2.955651 kcal Electronic energy + Delta-G solvation = -21178.885048 eV Core-core repulsion = 18020.742769 eV Total energy + Delta-G solvation = -3158.142279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65991 -40.34054 -38.89819 -35.95401 -34.60560 -33.65907 -32.27594 -31.89431 -30.42492 -27.27716 -25.97188 -24.46287 -23.97691 -23.36578 -21.68632 -21.05129 -19.20992 -18.77069 -17.72855 -17.03074 -16.70165 -16.47162 -16.32130 -16.10931 -15.71019 -15.31414 -14.96048 -14.86627 -14.58090 -14.55502 -14.15701 -14.04224 -13.50435 -12.96209 -12.72311 -12.69185 -12.54593 -12.28840 -12.06181 -11.74756 -11.65515 -11.30367 -11.26803 -10.99503 -10.59557 -10.53857 -10.20315 -10.18732 -8.72642 -7.92564 -5.38017 -0.35171 0.09235 1.38810 1.44165 1.50058 1.80364 2.01041 2.46701 2.85176 3.23597 3.45307 3.50936 3.74639 3.81272 3.94720 3.95443 4.05523 4.12052 4.23958 4.45534 4.52075 4.57566 4.79043 4.80391 4.81332 4.89757 5.05148 5.08242 5.19263 5.19360 5.29667 5.37268 5.50977 5.59156 5.60587 5.73511 6.32731 6.48043 6.88033 7.08020 7.15404 7.82318 8.30740 9.12235 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.005290 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.338490 B = 5291.756060 C = 6380.448182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.960 3.040 4 H -0.295 1.295 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.107 4.107 13 C 0.130 3.870 14 H 0.052 0.948 15 N -0.696 5.696 16 C 0.546 3.454 17 O -0.578 6.578 18 C -0.100 4.100 19 C -0.132 4.132 20 C 0.098 3.902 21 N -0.488 5.488 22 C 0.098 3.902 23 C -0.133 4.133 24 C 0.177 3.823 25 H 0.247 0.753 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.414 0.586 33 H 0.170 0.830 34 H 0.199 0.801 35 H 0.188 0.812 36 H 0.136 0.864 37 H 0.042 0.958 38 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -13.145 -10.241 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.245 4.245 3 Si 0.789 3.211 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.145 4.145 13 C 0.024 3.976 14 H 0.070 0.930 15 N -0.348 5.348 16 C 0.333 3.667 17 O -0.458 6.458 18 C -0.111 4.111 19 C -0.152 4.152 20 C -0.058 4.058 21 N -0.198 5.198 22 C -0.058 4.058 23 C -0.154 4.154 24 C 0.050 3.950 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.253 0.747 33 H 0.187 0.813 34 H 0.216 0.784 35 H 0.205 0.795 36 H 0.154 0.846 37 H 0.061 0.939 38 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -6.861 -12.461 -10.822 17.874 hybrid contribution 0.932 1.352 0.818 1.835 sum -5.930 -11.109 -10.003 16.082 Atomic orbital electron populations 1.70162 1.06708 1.25611 1.55216 1.25770 0.96021 1.01557 1.01150 0.85364 0.78663 0.79919 0.77196 1.22233 1.21735 1.18460 1.19532 0.93121 0.86270 1.40654 0.91294 1.44249 1.35974 1.02760 1.50386 1.21197 0.97616 0.85511 0.94699 1.21905 0.96979 1.00232 0.96993 1.21658 0.99270 0.93568 0.99957 1.21597 0.86704 0.98394 0.90938 0.92960 1.45769 1.26097 1.30735 1.32162 1.18765 0.85728 0.81408 0.80799 1.90796 1.47101 1.35879 1.72015 1.20415 0.95291 0.98320 0.97068 1.22667 0.93930 0.97646 1.01000 1.23378 0.96125 0.96827 0.89498 1.67646 1.29795 1.03279 1.19065 1.23129 0.88715 0.95804 0.98191 1.22425 0.99459 0.98857 0.94680 1.20800 0.88245 0.97536 0.88455 0.94408 0.92681 0.95847 0.93071 0.88211 0.90319 0.89342 0.74737 0.81293 0.78386 0.79511 0.84623 0.93938 0.97950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 11.19 21.65 0.24 -57.89 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 3 Si 0.96 47.79 29.59 68.60 2.03 49.82 16 4 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.27 -15.27 9.58 84.03 0.81 -14.46 16 8 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 9 N -0.61 -31.37 2.99 -699.10 -2.09 -33.46 16 10 C 0.13 5.35 6.52 86.36 0.56 5.91 16 11 C -0.12 -3.65 6.08 30.67 0.19 -3.46 16 12 C -0.11 -2.97 5.35 30.62 0.16 -2.81 16 13 C 0.13 4.95 2.60 45.07 0.12 5.07 16 14 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 15 N -0.70 -21.79 5.04 -444.73 -2.24 -24.03 16 16 C 0.55 19.69 7.76 86.88 0.67 20.37 16 17 O -0.58 -27.28 16.11 -3.78 -0.06 -27.34 16 18 C -0.10 -2.75 5.91 -19.88 -0.12 -2.87 16 19 C -0.13 -2.49 9.62 22.63 0.22 -2.27 16 20 C 0.10 1.66 11.17 84.68 0.95 2.61 16 21 N -0.49 -10.33 10.33 -196.01 -2.03 -12.36 16 22 C 0.10 2.06 11.17 84.67 0.95 3.01 16 23 C -0.13 -3.51 9.68 22.63 0.22 -3.29 16 24 C 0.18 8.83 4.89 86.36 0.42 9.25 16 25 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 26 H 0.05 2.15 7.93 -2.39 -0.02 2.14 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.41 9.03 6.75 -92.70 -0.63 8.41 16 33 H 0.17 2.01 6.54 -2.91 -0.02 1.99 16 34 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.14 3.80 7.74 -2.91 -0.02 3.78 16 37 H 0.04 2.57 6.03 -2.39 -0.01 2.56 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -79.38 315.57 1.86 -77.52 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.45 Total: 13.18 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 5.56 Total: 14.56 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -6.12 Total: -127.74 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -79.38 1.86 -77.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586059034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.563 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds