Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48506 * 109.46881 * 274.88756 * 3 2 1 5 5 H 1.48497 * 109.47360 * 34.88287 * 3 2 1 6 6 H 1.48493 * 109.47311 * 154.88995 * 3 2 1 7 7 C 1.38810 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00294 * 339.73928 * 7 2 1 9 9 N 1.36941 * 119.99691 * 159.73523 * 7 2 1 10 10 C 1.46931 * 120.62942 * 152.78165 * 9 7 2 11 11 C 1.53192 * 108.77266 * 126.41363 * 10 9 7 12 12 C 1.53045 * 109.31193 * 54.63577 * 11 10 9 13 13 C 1.53033 * 109.53713 * 298.63164 * 12 11 10 14 14 H 1.09000 * 109.50325 * 301.41548 * 13 12 11 15 15 N 1.46495 * 109.49600 * 181.31633 * 13 12 11 16 16 C 1.34784 * 120.00122 * 155.16037 * 15 13 12 17 17 O 1.21510 * 119.99815 * 0.02562 * 16 15 13 18 18 C 1.48147 * 120.00106 * 179.97438 * 16 15 13 19 19 C 1.39820 * 120.92243 * 359.72666 * 18 16 15 20 20 C 1.38149 * 118.99952 * 179.75161 * 19 18 16 21 21 N 1.31817 * 120.89797 * 0.53591 * 20 19 18 22 22 C 1.31816 * 122.04507 * 359.73297 * 21 20 19 23 23 C 1.38144 * 120.89695 * 359.97438 * 22 21 20 24 24 C 1.46926 * 120.63092 * 332.80577 * 9 7 2 25 25 H 0.97000 * 119.99793 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.58662 * 246.20528 * 10 9 7 27 27 H 1.08998 * 109.58562 * 6.62839 * 10 9 7 28 28 H 1.09005 * 109.49367 * 174.58900 * 11 10 9 29 29 H 1.09003 * 109.49961 * 294.68481 * 11 10 9 30 30 H 1.08999 * 109.45586 * 178.60747 * 12 11 10 31 31 H 1.08994 * 109.44574 * 58.64847 * 12 11 10 32 32 H 0.97001 * 120.00347 * 335.16540 * 15 13 12 33 33 H 1.07997 * 120.49699 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.55093 * 180.26232 * 20 19 18 35 35 H 1.07998 * 119.54955 * 180.02562 * 22 21 20 36 36 H 1.08001 * 120.49619 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.58787 * 353.37114 * 24 9 7 38 38 H 1.08997 * 109.58413 * 113.65678 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3945 2.1060 -1.3951 5 1 1.5032 2.6206 0.8007 6 1 3.5956 1.4125 0.5941 7 6 2.0102 -1.2022 0.0005 8 1 1.5203 -2.1084 0.3248 9 7 3.3160 -1.2391 -0.4102 10 6 4.2335 -2.2657 0.1029 11 6 4.8801 -2.9867 -1.0841 12 6 5.5403 -1.9565 -2.0034 13 6 4.4777 -0.9961 -2.5423 14 1 3.7177 -1.5604 -3.0828 15 7 5.1056 -0.0298 -3.4468 16 6 4.3727 0.5710 -4.4052 17 8 3.1911 0.3116 -4.5187 18 6 5.0076 1.5487 -5.3195 19 6 6.3641 1.8666 -5.2018 20 6 6.9165 2.7799 -6.0789 21 7 6.1808 3.3556 -7.0089 22 6 4.8978 3.0885 -7.1507 23 6 4.2657 2.1832 -6.3205 24 6 3.8264 -0.2525 -1.3719 25 1 -0.4850 0.8401 -0.0004 26 1 5.0067 -1.7945 0.7095 27 1 3.6781 -2.9827 0.7075 28 1 5.6337 -3.6846 -0.7191 29 1 4.1163 -3.5323 -1.6384 30 1 6.0224 -2.4690 -2.8359 31 1 6.2865 -1.3945 -1.4419 32 1 6.0488 0.1776 -3.3560 33 1 6.9716 1.4025 -4.4391 34 1 7.9644 3.0288 -5.9988 35 1 4.3333 3.5835 -7.9270 36 1 3.2143 1.9688 -6.4427 37 1 3.0026 0.3587 -1.7404 38 1 4.5647 0.3845 -0.8849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586059035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = 0.223748 kcal Electronic energy + Delta-G solvation = -21310.833600 eV Core-core repulsion = 18152.829190 eV Total energy + Delta-G solvation = -3158.004410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74501 -40.46158 -39.11106 -36.07306 -34.64772 -33.72624 -32.61692 -32.27808 -30.65495 -27.24102 -26.09925 -24.55376 -24.29800 -23.34150 -21.85995 -21.13704 -19.33183 -18.87224 -17.88691 -17.39664 -16.74206 -16.54287 -16.35662 -16.27928 -15.88751 -15.49377 -15.06842 -14.97959 -14.69742 -14.60555 -14.48299 -14.11250 -13.85900 -13.45177 -12.75829 -12.67084 -12.59470 -12.48585 -11.84910 -11.76540 -11.68791 -11.40115 -11.35147 -11.04916 -10.85451 -10.58012 -10.28091 -10.23422 -8.97138 -8.24169 -5.54924 -0.40390 0.05909 1.21993 1.26914 1.37089 1.72476 1.89390 2.34413 2.80836 2.98959 3.30248 3.47050 3.49110 3.73325 3.82582 3.90770 3.99941 4.01890 4.12374 4.31401 4.36306 4.48860 4.63843 4.73836 4.77347 4.78616 4.85752 4.95668 5.03702 5.06909 5.14372 5.20836 5.30430 5.53095 5.57314 5.81404 6.06498 6.38035 6.85172 6.85544 7.06193 7.56653 7.95454 8.95719 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.005725 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.976419 B = 4889.305786 C = 5735.870255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.300 1.300 5 H -0.307 1.307 6 H -0.246 1.246 7 C -0.249 4.249 8 H 0.057 0.943 9 N -0.618 5.618 10 C 0.136 3.864 11 C -0.125 4.125 12 C -0.106 4.106 13 C 0.134 3.866 14 H 0.056 0.944 15 N -0.698 5.698 16 C 0.544 3.456 17 O -0.577 6.577 18 C -0.103 4.103 19 C -0.130 4.130 20 C 0.099 3.901 21 N -0.488 5.488 22 C 0.098 3.902 23 C -0.135 4.135 24 C 0.118 3.882 25 H 0.260 0.740 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.419 0.581 33 H 0.174 0.826 34 H 0.201 0.799 35 H 0.187 0.813 36 H 0.135 0.865 37 H 0.032 0.968 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.465 2.126 -10.843 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.230 4.230 3 Si 0.775 3.225 4 H -0.228 1.228 5 H -0.236 1.236 6 H -0.170 1.170 7 C -0.379 4.379 8 H 0.075 0.925 9 N -0.343 5.343 10 C 0.012 3.988 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.028 3.972 14 H 0.074 0.926 15 N -0.351 5.351 16 C 0.331 3.669 17 O -0.456 6.456 18 C -0.114 4.114 19 C -0.150 4.150 20 C -0.058 4.058 21 N -0.197 5.197 22 C -0.058 4.058 23 C -0.156 4.156 24 C -0.008 4.008 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.258 0.742 33 H 0.192 0.808 34 H 0.217 0.783 35 H 0.204 0.796 36 H 0.153 0.847 37 H 0.050 0.950 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 20.904 2.573 -11.416 23.957 hybrid contribution -1.045 0.342 0.721 1.315 sum 19.859 2.915 -10.695 22.744 Atomic orbital electron populations 1.69963 1.07369 1.27027 1.55768 1.25897 0.95833 1.00934 1.00301 0.85925 0.79738 0.80819 0.76067 1.22816 1.23566 1.17007 1.18915 0.86962 0.93499 1.38494 0.92528 1.44439 1.07886 1.34551 1.47385 1.21285 0.92101 0.90229 0.95184 1.21932 1.00122 0.97785 0.96599 1.21684 0.96201 0.96315 1.00186 1.21468 0.96379 0.90036 0.89319 0.92599 1.45791 1.13976 1.43406 1.31944 1.18838 0.85999 0.81023 0.81033 1.90832 1.17659 1.64392 1.72728 1.20400 0.96060 0.97942 0.96996 1.22693 0.92994 0.98404 1.00914 1.23416 1.01657 0.91446 0.89283 1.67655 1.07301 1.24090 1.20698 1.23118 0.90762 0.94126 0.97817 1.22439 1.01911 0.96469 0.94754 1.21662 0.96597 0.92304 0.90281 0.93113 0.93516 0.92502 0.87605 0.93517 0.88943 0.89099 0.74208 0.80826 0.78257 0.79628 0.84749 0.95001 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.61 13.97 21.65 0.30 -63.31 16 2 C -0.03 -2.16 5.24 84.86 0.44 -1.72 16 3 Si 0.94 50.02 24.34 68.60 1.67 51.69 16 4 H -0.30 -16.27 6.70 99.48 0.67 -15.60 16 5 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 6 H -0.25 -11.85 6.45 99.48 0.64 -11.21 16 7 C -0.25 -14.72 10.04 84.03 0.84 -13.88 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 9 N -0.62 -29.47 2.77 -699.09 -1.94 -31.41 16 10 C 0.14 4.86 6.52 86.36 0.56 5.42 16 11 C -0.13 -3.35 6.08 30.67 0.19 -3.16 16 12 C -0.11 -2.49 5.35 30.62 0.16 -2.32 16 13 C 0.13 4.60 2.60 45.07 0.12 4.71 16 14 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 15 N -0.70 -19.20 5.04 -444.77 -2.24 -21.44 16 16 C 0.54 18.24 7.76 86.87 0.67 18.92 16 17 O -0.58 -26.29 16.11 -3.75 -0.06 -26.35 16 18 C -0.10 -2.61 5.91 -19.88 -0.12 -2.73 16 19 C -0.13 -2.10 9.62 22.63 0.22 -1.88 16 20 C 0.10 1.46 11.17 84.67 0.95 2.41 16 21 N -0.49 -9.58 10.34 -196.00 -2.03 -11.61 16 22 C 0.10 1.94 11.17 84.67 0.95 2.89 16 23 C -0.13 -3.36 9.68 22.63 0.22 -3.15 16 24 C 0.12 5.19 3.77 86.36 0.33 5.52 16 25 H 0.26 16.54 8.31 -92.71 -0.77 15.77 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 28 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.42 7.14 6.74 -92.71 -0.63 6.51 16 33 H 0.17 1.44 6.54 -2.91 -0.02 1.42 16 34 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.13 3.65 7.74 -2.91 -0.02 3.62 16 37 H 0.03 1.71 4.50 -2.39 -0.01 1.70 16 38 H 0.04 1.66 6.97 -2.39 -0.02 1.65 16 Total: -1.00 -84.61 308.96 1.58 -83.03 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.35 Total: 8.37 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.53 Total: 11.03 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -5.90 Total: -127.76 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.35 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 1.67 Total: 51.69 kcal Total: -84.61 1.58 -83.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586059035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.250 kcal (2) G-P(sol) polarization free energy of solvation -84.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds