Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34221 * 117.00253 * 2 1 4 4 O 1.20822 * 120.00190 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00311 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.33394 * 57.74130 * 5 3 2 7 7 C 1.54914 * 110.46686 * 295.42716 * 5 3 2 8 8 C 1.55140 * 101.65375 * 204.04976 * 7 5 3 9 9 H 1.08999 * 110.71095 * 277.27116 * 8 7 5 10 10 F 1.39896 * 110.70340 * 154.03497 * 8 7 5 11 11 C 1.54323 * 103.01797 * 35.65373 * 8 7 5 12 12 N 1.47441 * 107.23358 * 337.71498 * 11 8 7 13 13 C 1.46896 * 111.00123 * 236.74180 * 12 11 8 14 14 C 1.52994 * 109.47487 * 176.74855 * 13 12 11 15 15 O 1.42900 * 109.47306 * 66.99265 * 14 13 12 16 16 C 1.42895 * 114.00108 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46991 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00520 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99963 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47207 * 60.00183 * 21 19 17 23 23 H 1.48500 * 109.47262 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46886 * 300.00306 * 21 19 17 25 25 H 1.08996 * 109.46696 * 299.99755 * 1 2 3 26 26 H 1.08998 * 109.46950 * 60.00246 * 1 2 3 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08992 * 110.98850 * 322.14491 * 7 5 3 29 29 H 1.09001 * 110.98914 * 85.96218 * 7 5 3 30 30 H 1.09000 * 109.88955 * 218.30772 * 11 8 7 31 31 H 1.09004 * 109.88728 * 97.11779 * 11 8 7 32 32 H 1.09000 * 109.46745 * 296.74959 * 13 12 11 33 33 H 1.08999 * 109.47137 * 56.74269 * 13 12 11 34 34 H 1.09000 * 109.47302 * 186.99159 * 14 13 12 35 35 H 1.09005 * 109.46803 * 306.99023 * 14 13 12 36 36 H 1.09006 * 109.47097 * 299.99280 * 16 15 14 37 37 H 1.08992 * 109.47809 * 59.99482 * 16 15 14 38 38 H 0.96999 * 119.99625 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9728 0.7500 -0.8652 7 6 4.1404 0.6806 1.3098 8 6 5.5144 1.3949 1.4023 9 1 6.2564 0.8844 0.7884 10 9 5.9415 1.4755 2.7320 11 6 5.2142 2.8002 0.8395 12 7 4.0079 2.6858 -0.0005 13 6 4.2717 3.1549 -1.3673 14 6 3.0242 2.9458 -2.2280 15 8 1.9801 3.8077 -1.7708 16 6 0.7635 3.6903 -2.5111 17 6 -0.2621 4.6387 -1.9456 18 1 -0.0103 5.2678 -1.1048 19 6 -1.5222 4.7032 -2.5018 20 7 -1.8291 3.9367 -3.5255 21 14 -2.7937 5.8782 -1.8004 22 1 -2.2873 7.2708 -1.8970 23 1 -4.0576 5.7571 -2.5706 24 1 -3.0468 5.5411 -0.3765 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5104 0.9341 2.1623 29 1 4.2664 -0.3989 1.2267 30 1 6.0543 3.1456 0.2369 31 1 5.0313 3.4962 1.6582 32 1 4.5244 4.2149 -1.3451 33 1 5.1036 2.5919 -1.7904 34 1 3.2570 3.1769 -3.2675 35 1 2.6990 1.9083 -2.1505 36 1 0.9492 3.9367 -3.5566 37 1 0.3915 2.6684 -2.4392 38 1 -2.7154 3.9823 -3.9170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590179007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -160.845716 kcal Electronic energy + Delta-G solvation = -22746.456345 eV Core-core repulsion = 19118.405463 eV Total energy + Delta-G solvation = -3628.050881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.83515 -40.36639 -38.50249 -36.35935 -35.69379 -32.83816 -32.02952 -30.04694 -28.08413 -27.13106 -26.44358 -23.57562 -22.20250 -21.57388 -21.52301 -19.78659 -17.66666 -16.86958 -16.45663 -16.27193 -16.20245 -15.44780 -15.40877 -15.10569 -14.82174 -14.31546 -14.02705 -13.81567 -13.64855 -13.22762 -12.71379 -12.64700 -12.40311 -12.19056 -11.70704 -11.67335 -11.52699 -11.19597 -11.12835 -10.99467 -10.74201 -10.68075 -10.38646 -10.23492 -9.89092 -9.73874 -8.96117 -8.65906 -8.35780 -7.97792 -5.98725 -3.96909 2.76930 2.83476 3.39606 3.40930 3.46501 3.81412 4.04283 4.24294 4.34037 4.45173 4.54126 4.85074 4.90054 5.08484 5.23421 5.28104 5.36383 5.37870 5.44801 5.51453 5.60217 5.63673 5.70805 5.86489 5.95046 5.99124 6.06099 6.22479 6.72000 6.90782 6.94299 7.22192 7.58695 7.94387 8.31427 8.39296 8.77168 9.17587 9.66277 11.13342 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.005196 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.675561 B = 5387.602802 C = 5833.697168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.434 3.566 4 O -0.412 6.412 5 C 0.088 3.912 6 H 0.090 0.910 7 C -0.140 4.140 8 C 0.071 3.929 9 H 0.097 0.903 10 F -0.203 7.203 11 C 0.023 3.977 12 N -0.495 5.495 13 C 0.056 3.944 14 C 0.063 3.937 15 O -0.359 6.359 16 C 0.205 3.795 17 C -0.494 4.494 18 H 0.065 0.935 19 C 0.053 3.947 20 N -0.905 5.905 21 Si 0.905 3.095 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.024 0.976 36 H -0.006 1.006 37 H -0.002 1.002 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.391 -9.914 6.883 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.270 3.730 4 O -0.290 6.290 5 C -0.022 4.022 6 H 0.108 0.892 7 C -0.178 4.178 8 C 0.033 3.967 9 H 0.115 0.885 10 F -0.183 7.183 11 C -0.105 4.105 12 N -0.220 5.220 13 C -0.071 4.071 14 C -0.015 4.015 15 O -0.278 6.278 16 C 0.130 3.870 17 C -0.533 4.533 18 H 0.083 0.917 19 C -0.147 4.147 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.012 0.988 37 H 0.015 0.985 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.608 -9.140 7.138 17.880 hybrid contribution -0.402 -0.118 -0.387 0.570 sum 13.207 -9.258 6.751 17.485 Atomic orbital electron populations 1.23196 0.76172 1.02750 1.03353 1.86374 1.23436 1.34016 1.85577 1.23099 0.91036 0.82255 0.76597 1.91005 1.65133 1.34727 1.38134 1.21855 0.90339 0.90736 0.99287 0.89239 1.23250 0.95557 1.01183 0.97827 1.22839 0.96436 0.98049 0.79336 0.88548 1.92826 1.91350 1.97311 1.36836 1.23476 0.91928 0.96236 0.98879 1.63000 1.29924 1.16870 1.12204 1.22449 0.96029 1.01880 0.86743 1.22233 0.89553 0.94302 0.95457 1.88042 1.21807 1.59814 1.58160 1.20014 0.80688 0.96162 0.90118 1.20984 0.95543 1.21211 1.15521 0.91715 1.24912 0.98171 0.96427 0.95182 1.69963 1.21231 1.39763 1.23623 0.86449 0.80087 0.81203 0.79022 1.20142 1.21349 1.20142 0.92134 0.91202 0.88837 0.88652 0.88404 0.90949 0.88561 0.88952 0.93799 0.94232 0.95820 0.98787 0.98459 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.66 16 2 O -0.38 -6.01 10.56 -39.23 -0.41 -6.42 16 3 C 0.43 7.71 5.68 36.01 0.20 7.91 16 4 O -0.41 -9.40 12.72 -26.24 -0.33 -9.73 16 5 C 0.09 1.19 2.31 -67.33 -0.16 1.03 16 6 H 0.09 1.03 7.47 -51.93 -0.39 0.65 16 7 C -0.14 -1.48 6.29 -24.59 -0.15 -1.64 16 8 C 0.07 0.67 4.75 -24.91 -0.12 0.55 16 9 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 10 F -0.20 -2.29 17.18 2.25 0.04 -2.25 16 11 C 0.02 0.25 6.72 -2.83 -0.02 0.23 16 12 N -0.49 -7.31 4.47 -224.75 -1.00 -8.31 16 13 C 0.06 0.82 4.95 -3.83 -0.02 0.80 16 14 C 0.06 1.20 5.26 37.15 0.20 1.39 16 15 O -0.36 -9.06 8.15 -57.80 -0.47 -9.53 16 16 C 0.20 5.86 5.18 36.01 0.19 6.05 16 17 C -0.49 -15.22 9.43 -34.44 -0.32 -15.55 16 18 H 0.06 2.03 7.81 -52.49 -0.41 1.62 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.91 -27.85 13.29 55.43 0.74 -27.11 16 21 Si 0.90 22.81 29.54 -169.99 -5.02 17.79 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 26 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.64 7.58 -51.93 -0.39 0.25 16 31 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.48 8.13 -51.93 -0.42 0.06 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.45 5.56 -51.93 -0.29 0.16 16 36 H -0.01 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.00 -0.07 8.06 -51.93 -0.42 -0.49 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -35.69 318.03 -6.59 -42.28 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -5.68 Total: -5.44 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 0.76 Total: 3.93 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.27 Total: -35.42 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.22 Total: -25.68 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.69 -6.59 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590179007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.566 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds