Wall clock time and date at job start Mon Mar 30 2020 01:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34221 * 117.00253 * 2 1 4 4 O 1.20822 * 120.00190 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00311 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.33394 * 57.74130 * 5 3 2 7 7 C 1.54914 * 110.46686 * 295.42716 * 5 3 2 8 8 C 1.55140 * 101.65375 * 204.04976 * 7 5 3 9 9 H 1.08999 * 110.71095 * 277.27116 * 8 7 5 10 10 F 1.39896 * 110.70340 * 154.03497 * 8 7 5 11 11 C 1.54323 * 103.01797 * 35.65373 * 8 7 5 12 12 N 1.47441 * 107.23358 * 337.71498 * 11 8 7 13 13 C 1.46896 * 111.00123 * 236.74180 * 12 11 8 14 14 C 1.52994 * 109.47487 * 176.74855 * 13 12 11 15 15 O 1.42900 * 109.47306 * 66.99265 * 14 13 12 16 16 C 1.42895 * 114.00108 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46991 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00520 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99963 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47207 * 60.00183 * 21 19 17 23 23 H 1.48500 * 109.47262 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46886 * 300.00306 * 21 19 17 25 25 H 1.08996 * 109.46696 * 299.99755 * 1 2 3 26 26 H 1.08998 * 109.46950 * 60.00246 * 1 2 3 27 27 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.08992 * 110.98850 * 322.14491 * 7 5 3 29 29 H 1.09001 * 110.98914 * 85.96218 * 7 5 3 30 30 H 1.09000 * 109.88955 * 218.30772 * 11 8 7 31 31 H 1.09004 * 109.88728 * 97.11779 * 11 8 7 32 32 H 1.09000 * 109.46745 * 296.74959 * 13 12 11 33 33 H 1.08999 * 109.47137 * 56.74269 * 13 12 11 34 34 H 1.09000 * 109.47302 * 186.99159 * 14 13 12 35 35 H 1.09005 * 109.46803 * 306.99023 * 14 13 12 36 36 H 1.09006 * 109.47097 * 299.99280 * 16 15 14 37 37 H 1.08992 * 109.47809 * 59.99482 * 16 15 14 38 38 H 0.96999 * 119.99625 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9728 0.7500 -0.8652 7 6 4.1404 0.6806 1.3098 8 6 5.5144 1.3949 1.4023 9 1 6.2564 0.8844 0.7884 10 9 5.9415 1.4755 2.7320 11 6 5.2142 2.8002 0.8395 12 7 4.0079 2.6858 -0.0005 13 6 4.2717 3.1549 -1.3673 14 6 3.0242 2.9458 -2.2280 15 8 1.9801 3.8077 -1.7708 16 6 0.7635 3.6903 -2.5111 17 6 -0.2621 4.6387 -1.9456 18 1 -0.0103 5.2678 -1.1048 19 6 -1.5222 4.7032 -2.5018 20 7 -1.8291 3.9367 -3.5255 21 14 -2.7937 5.8782 -1.8004 22 1 -2.2873 7.2708 -1.8970 23 1 -4.0576 5.7571 -2.5706 24 1 -3.0468 5.5411 -0.3765 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5104 0.9341 2.1623 29 1 4.2664 -0.3989 1.2267 30 1 6.0543 3.1456 0.2369 31 1 5.0313 3.4962 1.6582 32 1 4.5244 4.2149 -1.3451 33 1 5.1036 2.5919 -1.7904 34 1 3.2570 3.1769 -3.2675 35 1 2.6990 1.9083 -2.1505 36 1 0.9492 3.9367 -3.5566 37 1 0.3915 2.6684 -2.4392 38 1 -2.7154 3.9823 -3.9170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590179007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:54 Heat of formation + Delta-G solvation = -186.368885 kcal Electronic energy + Delta-G solvation = -22747.563113 eV Core-core repulsion = 19118.405463 eV Total energy + Delta-G solvation = -3629.157649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.63429 -41.64372 -39.68402 -38.16208 -37.14344 -34.95975 -33.35754 -31.13944 -29.72338 -28.48710 -28.10726 -24.75163 -24.42468 -22.88622 -22.39182 -20.98605 -18.83766 -18.58249 -17.93926 -17.67442 -17.49541 -17.22519 -16.62209 -16.33641 -16.20377 -15.78632 -15.41564 -15.22959 -14.73040 -14.61083 -14.25812 -14.00725 -13.60550 -13.49947 -13.39176 -13.00680 -12.85622 -12.79904 -12.64679 -12.38059 -12.31463 -12.03984 -11.92819 -11.66507 -11.60071 -11.24455 -11.10405 -10.82874 -10.08377 -9.34947 -8.30186 -6.39395 1.34882 1.40413 1.42185 1.48580 1.66031 2.34483 2.80460 3.02797 3.17156 3.30215 3.38057 3.49795 3.82444 3.99745 4.05238 4.13523 4.14705 4.29195 4.33904 4.34962 4.42856 4.54329 4.64104 4.68958 4.73087 4.82960 4.84802 4.96123 5.15022 5.24136 5.51768 5.57263 5.76818 5.93799 6.03457 6.61220 6.92484 7.03508 7.31712 8.82289 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023122 B = 0.005196 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.675561 B = 5387.602802 C = 5833.697168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.429 3.571 4 O -0.474 6.474 5 C 0.090 3.910 6 H 0.119 0.881 7 C -0.134 4.134 8 C 0.081 3.919 9 H 0.139 0.861 10 F -0.213 7.213 11 C 0.023 3.977 12 N -0.533 5.533 13 C 0.066 3.934 14 C 0.051 3.949 15 O -0.375 6.375 16 C 0.229 3.771 17 C -0.530 4.530 18 H 0.050 0.950 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.978 3.022 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.272 1.272 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.139 0.861 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.021 0.979 36 H -0.027 1.027 37 H -0.031 1.031 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.998 -10.718 7.312 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.268 3.732 4 O -0.357 6.357 5 C -0.020 4.020 6 H 0.136 0.864 7 C -0.172 4.172 8 C 0.044 3.956 9 H 0.157 0.843 10 F -0.194 7.194 11 C -0.104 4.104 12 N -0.259 5.259 13 C -0.061 4.061 14 C -0.027 4.027 15 O -0.294 6.294 16 C 0.153 3.847 17 C -0.568 4.568 18 H 0.068 0.932 19 C -0.192 4.192 20 N -0.573 5.573 21 Si 0.801 3.199 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.197 1.197 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.157 0.843 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.039 0.961 36 H -0.009 1.009 37 H -0.013 1.013 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.256 -9.972 7.570 19.736 hybrid contribution -0.879 0.061 -0.528 1.028 sum 14.377 -9.911 7.042 18.829 Atomic orbital electron populations 1.23288 0.76030 1.04957 1.01149 1.86397 1.23653 1.33419 1.84999 1.24228 0.92983 0.81629 0.74323 1.90987 1.66811 1.36625 1.41280 1.21997 0.87082 0.90907 1.02016 0.86369 1.23271 0.95751 1.02959 0.95226 1.22950 0.96630 0.96919 0.79090 0.84304 1.92812 1.91356 1.97285 1.37945 1.23480 0.91329 0.97251 0.98303 1.62764 1.32449 1.18021 1.12688 1.22393 0.94564 1.02679 0.86435 1.22645 0.89683 0.93178 0.97192 1.87994 1.21771 1.61479 1.58167 1.19487 0.82165 0.93975 0.89048 1.21233 0.97265 1.22323 1.15944 0.93158 1.25879 1.00076 0.98008 0.95195 1.70065 1.22153 1.40701 1.24362 0.85329 0.77366 0.78898 0.78352 1.18960 1.19525 1.19736 0.92801 0.94958 0.84334 0.90809 0.85362 0.87980 0.90400 0.89353 0.88718 0.93434 0.96101 1.00928 1.01293 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.56 113.37 1.20 2.43 16 2 O -0.37 -11.76 10.56 -51.33 -0.54 -12.30 16 3 C 0.43 15.50 5.68 71.24 0.40 15.90 16 4 O -0.47 -22.82 12.72 29.14 0.37 -22.45 16 5 C 0.09 2.27 2.31 44.64 0.10 2.38 16 6 H 0.12 2.32 7.47 -2.39 -0.02 2.31 16 7 C -0.13 -2.49 6.29 31.98 0.20 -2.29 16 8 C 0.08 1.23 4.75 31.78 0.15 1.38 16 9 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 10 F -0.21 -4.24 17.18 44.97 0.77 -3.46 16 11 C 0.02 0.46 6.72 86.65 0.58 1.04 16 12 N -0.53 -14.97 4.47 -864.98 -3.87 -18.84 16 13 C 0.07 1.79 4.95 86.30 0.43 2.22 16 14 C 0.05 1.94 5.26 71.98 0.38 2.31 16 15 O -0.38 -19.71 8.15 -127.40 -1.04 -20.75 16 16 C 0.23 13.82 5.18 71.24 0.37 14.19 16 17 C -0.53 -34.02 9.43 25.60 0.24 -33.78 16 18 H 0.05 3.29 7.81 -2.91 -0.02 3.26 16 19 C 0.01 0.37 5.46 84.66 0.46 0.83 16 20 N -0.93 -58.56 13.29 21.45 0.28 -58.28 16 21 Si 0.98 47.30 29.54 68.60 2.03 49.33 16 22 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 25 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 26 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 27 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 1.38 7.58 -2.39 -0.02 1.36 16 31 H 0.08 1.79 8.10 -2.38 -0.02 1.77 16 32 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.10 1.62 8.13 -2.39 -0.02 1.60 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.02 0.81 5.56 -2.38 -0.01 0.79 16 36 H -0.03 -1.68 8.14 -2.38 -0.02 -1.70 16 37 H -0.03 -1.98 8.06 -2.39 -0.02 -2.00 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -82.56 318.03 3.57 -78.99 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.05 Total: 1.16 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.52 Total: 6.62 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -3.58 Total: -77.12 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -1.21 Total: -55.51 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.77 Total: -3.46 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -82.56 3.57 -78.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590179007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.380 kcal (2) G-P(sol) polarization free energy of solvation -82.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds