Wall clock time and date at job start Mon Mar 30 2020 01:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47177 * 274.00041 * 3 2 1 5 5 H 1.48500 * 109.47196 * 34.00232 * 3 2 1 6 6 H 1.48501 * 109.47059 * 154.00354 * 3 2 1 7 7 C 1.37878 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 6.80596 * 7 2 1 9 9 C 1.50698 * 119.99933 * 186.81054 * 7 2 1 10 10 O 1.42901 * 110.29287 * 58.26548 * 9 7 2 11 11 C 1.54254 * 110.32478 * 180.39516 * 9 7 2 12 12 C 1.54381 * 105.15334 * 118.94255 * 11 9 7 13 13 N 1.48712 * 104.51424 * 336.26973 * 12 11 9 14 14 C 1.39055 * 111.01320 * 158.96688 * 13 12 11 15 15 C 1.39529 * 120.23680 * 64.48880 * 14 13 12 16 16 C 1.38414 * 117.83367 * 179.97438 * 15 14 13 17 17 C 1.38688 * 118.44660 * 0.02562 * 16 15 14 18 18 N 1.32075 * 119.59460 * 359.94076 * 17 16 15 19 19 N 1.28260 * 122.38612 * 359.81242 * 18 17 16 20 20 C 1.51322 * 109.50250 * 179.97438 * 17 16 15 21 21 C 1.54374 * 105.24571 * 17.14241 * 20 17 16 22 22 C 1.50994 * 131.57514 * 180.02562 * 16 15 14 23 23 C 1.48559 * 104.29137 * 39.36378 * 13 12 11 24 24 H 0.97000 * 120.00315 * 0.02562 * 1 2 3 25 25 H 0.96691 * 114.00046 * 60.66835 * 10 9 7 26 26 H 1.08999 * 110.32490 * 237.89323 * 11 9 7 27 27 H 1.09003 * 110.32494 * 359.97438 * 11 9 7 28 28 H 1.09001 * 110.40835 * 94.97720 * 12 11 9 29 29 H 1.09006 * 110.41117 * 217.41729 * 12 11 9 30 30 H 1.07998 * 121.08196 * 359.95960 * 15 14 13 31 31 H 1.08995 * 110.29022 * 136.08739 * 20 17 16 32 32 H 1.08997 * 110.28682 * 258.10899 * 20 17 16 33 33 H 1.09002 * 110.80009 * 91.98433 * 21 20 17 34 34 H 1.08995 * 110.80818 * 215.29915 * 21 20 17 35 35 H 1.08996 * 110.31320 * 281.86745 * 22 16 15 36 36 H 1.08991 * 110.31394 * 44.05187 * 22 16 15 37 37 H 1.09003 * 110.41268 * 201.79553 * 23 13 12 38 38 H 1.08994 * 110.51316 * 79.40122 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4119 2.0953 -1.3966 5 1 1.4913 2.6268 0.7830 6 1 3.5864 1.4173 0.6137 7 6 2.0045 -1.1940 -0.0005 8 1 1.4702 -2.1260 -0.1118 9 6 3.5035 -1.1987 0.1542 10 8 3.8773 -0.5646 1.3791 11 6 4.0420 -2.6436 0.1129 12 6 4.9884 -2.6869 -1.1060 13 7 4.5156 -1.5839 -1.9843 14 6 5.5139 -1.1868 -2.8671 15 6 5.9861 -2.0710 -3.8377 16 6 6.9800 -1.6237 -4.6908 17 6 7.4505 -0.3283 -4.5352 18 7 6.9440 0.4402 -3.5880 19 7 6.0197 0.0357 -2.7961 20 6 8.5251 -0.0541 -5.5647 21 6 8.3538 -1.1548 -6.6334 22 6 7.7032 -2.3019 -5.8296 23 6 4.1705 -0.4877 -1.0429 24 1 -0.4850 0.8400 -0.0004 25 1 3.5235 -0.9956 2.1690 26 1 4.5912 -2.8692 1.0270 27 1 3.2220 -3.3496 -0.0188 28 1 6.0178 -2.5096 -0.7944 29 1 4.9050 -3.6455 -1.6181 30 1 5.5891 -3.0720 -3.9204 31 1 8.3800 0.9304 -6.0095 32 1 9.5122 -0.1199 -5.1073 33 1 7.6934 -0.8187 -7.4329 34 1 9.3206 -1.4592 -7.0342 35 1 8.4681 -2.9759 -5.4442 36 1 6.9967 -2.8479 -6.4548 37 1 3.4726 0.2079 -1.5088 38 1 5.0702 0.0364 -0.7206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:41 Heat of formation + Delta-G solvation = 32.730022 kcal Electronic energy + Delta-G solvation = -21529.025266 eV Core-core repulsion = 18372.430435 eV Total energy + Delta-G solvation = -3156.594832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35032 -38.98417 -36.99727 -35.30333 -32.62029 -32.24960 -30.88992 -29.34098 -28.44770 -27.40570 -24.87805 -23.96533 -22.66246 -21.30022 -20.75421 -19.61400 -17.68293 -17.07840 -16.63489 -16.12249 -15.55718 -15.23482 -14.78314 -14.38839 -14.05006 -13.63952 -13.40325 -13.17037 -12.92801 -12.86328 -12.62143 -12.23090 -12.04222 -11.76233 -11.54004 -11.49998 -11.42404 -11.13179 -10.77279 -10.42751 -10.08137 -10.04158 -9.88826 -9.60328 -9.31690 -8.99105 -8.64973 -8.36942 -8.07376 -6.12695 -4.21692 0.92578 1.07127 3.40124 3.49864 3.55793 3.66126 3.74383 3.98276 4.28103 4.52913 4.56004 4.59109 4.67734 4.88031 5.01164 5.12954 5.23167 5.28167 5.35556 5.40347 5.42620 5.52885 5.58038 5.63044 5.70469 5.75268 5.84823 5.91100 6.05012 6.21126 6.29655 6.35681 6.60246 6.70311 6.94494 7.08590 7.39074 7.61576 8.28017 8.82831 8.96185 9.00136 9.52159 10.97610 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.005222 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.364781 B = 5360.846989 C = 5754.142540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.087 3.913 3 Si 0.865 3.135 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.223 1.223 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.217 3.783 10 O -0.576 6.576 11 C -0.140 4.140 12 C 0.048 3.952 13 N -0.437 5.437 14 C 0.255 3.745 15 C -0.119 4.119 16 C -0.085 4.085 17 C 0.023 3.977 18 N -0.216 5.216 19 N -0.275 5.275 20 C -0.060 4.060 21 C -0.119 4.119 22 C -0.080 4.080 23 C 0.057 3.943 24 H 0.265 0.735 25 H 0.364 0.636 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.938 -6.511 -10.340 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.117 4.117 3 Si 0.692 3.308 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.145 1.145 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.177 3.823 10 O -0.382 6.382 11 C -0.178 4.178 12 C -0.078 4.078 13 N -0.156 5.156 14 C 0.017 3.983 15 C -0.150 4.150 16 C -0.096 4.096 17 C -0.126 4.126 18 N -0.057 5.057 19 N -0.122 5.122 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.117 4.117 23 C -0.069 4.069 24 H 0.075 0.925 25 H 0.212 0.788 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.566 -4.717 -10.224 20.030 hybrid contribution 0.272 -0.649 -0.099 0.711 sum 16.838 -5.365 -10.323 20.466 Atomic orbital electron populations 1.69938 1.06635 1.27436 1.48513 1.24962 0.94585 0.99649 0.92537 0.87153 0.83117 0.82570 0.77944 1.21299 1.22341 1.14536 1.21298 0.88801 0.95044 1.52766 0.90408 1.19722 0.94329 0.86320 0.81966 1.86537 1.77411 1.58125 1.16129 1.23036 0.98282 1.00996 0.95474 1.23158 0.97522 0.93489 0.93595 1.62397 1.27479 1.09620 1.16061 1.21826 0.89412 0.91903 0.95150 1.21387 0.97112 1.01752 0.94776 1.21478 0.95235 0.96198 0.96739 1.23367 0.98981 0.92427 0.97800 1.72414 1.03584 1.29107 1.00596 1.73411 1.06108 1.14681 1.17968 1.20850 0.95873 1.00475 0.92714 1.22351 1.01595 0.94430 0.97290 1.21005 0.98986 0.98033 0.93689 1.23296 0.99857 0.91896 0.91860 0.92528 0.78844 0.91494 0.90097 0.93556 0.89908 0.83405 0.89531 0.89286 0.90457 0.89682 0.89207 0.89695 0.89459 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.09 2.54 5.43 -17.82 -0.10 2.44 16 3 Si 0.86 22.81 24.05 -169.99 -4.09 18.72 16 4 H -0.29 -7.69 7.09 56.52 0.40 -7.29 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.22 -5.76 5.22 56.52 0.30 -5.47 16 7 C -0.54 -14.96 8.82 -34.44 -0.30 -15.26 16 8 H 0.08 2.30 7.60 -52.48 -0.40 1.90 16 9 C 0.22 5.05 0.90 -90.39 -0.08 4.97 16 10 O -0.58 -13.08 10.16 -35.23 -0.36 -13.44 16 11 C -0.14 -2.64 6.43 -25.35 -0.16 -2.80 16 12 C 0.05 0.82 6.08 -2.10 -0.01 0.81 16 13 N -0.44 -8.94 5.41 -168.48 -0.91 -9.85 16 14 C 0.26 4.86 6.24 -154.74 -0.97 3.89 16 15 C -0.12 -1.77 9.66 -39.04 -0.38 -2.15 16 16 C -0.09 -1.10 6.20 -104.25 -0.65 -1.74 16 17 C 0.02 0.32 7.42 -82.02 -0.61 -0.28 16 18 N -0.22 -4.02 11.50 33.79 0.39 -3.64 16 19 N -0.28 -5.74 9.62 31.24 0.30 -5.44 16 20 C -0.06 -0.56 6.76 -26.86 -0.18 -0.74 16 21 C -0.12 -0.81 7.08 -25.26 -0.18 -0.99 16 22 C -0.08 -0.64 6.77 -26.98 -0.18 -0.82 16 23 C 0.06 1.35 3.59 -2.18 -0.01 1.34 16 24 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.36 7.03 9.08 45.56 0.41 7.45 16 26 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 27 H 0.08 1.54 7.42 -51.93 -0.39 1.16 16 28 H 0.05 0.75 7.97 -51.93 -0.41 0.34 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 2.30 4.85 -51.93 -0.25 2.05 16 38 H 0.06 1.48 7.12 -51.93 -0.37 1.11 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -34.26 300.87 -7.61 -41.87 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.45 Total: 5.05 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.81 Total: -11.33 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.55 Total: -45.40 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.36 Total: -13.44 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.09 Total: 18.72 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.26 -7.61 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.600 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds