Wall clock time and date at job start Mon Mar 30 2020 01:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47177 * 274.00041 * 3 2 1 5 5 H 1.48500 * 109.47196 * 34.00232 * 3 2 1 6 6 H 1.48501 * 109.47059 * 154.00354 * 3 2 1 7 7 C 1.37878 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 6.80596 * 7 2 1 9 9 C 1.50698 * 119.99933 * 186.81054 * 7 2 1 10 10 O 1.42901 * 110.29287 * 58.26548 * 9 7 2 11 11 C 1.54254 * 110.32478 * 180.39516 * 9 7 2 12 12 C 1.54381 * 105.15334 * 118.94255 * 11 9 7 13 13 N 1.48712 * 104.51424 * 336.26973 * 12 11 9 14 14 C 1.39055 * 111.01320 * 158.96688 * 13 12 11 15 15 C 1.39529 * 120.23680 * 64.48880 * 14 13 12 16 16 C 1.38414 * 117.83367 * 179.97438 * 15 14 13 17 17 C 1.38688 * 118.44660 * 0.02562 * 16 15 14 18 18 N 1.32075 * 119.59460 * 359.94076 * 17 16 15 19 19 N 1.28260 * 122.38612 * 359.81242 * 18 17 16 20 20 C 1.51322 * 109.50250 * 179.97438 * 17 16 15 21 21 C 1.54374 * 105.24571 * 17.14241 * 20 17 16 22 22 C 1.50994 * 131.57514 * 180.02562 * 16 15 14 23 23 C 1.48559 * 104.29137 * 39.36378 * 13 12 11 24 24 H 0.97000 * 120.00315 * 0.02562 * 1 2 3 25 25 H 0.96691 * 114.00046 * 60.66835 * 10 9 7 26 26 H 1.08999 * 110.32490 * 237.89323 * 11 9 7 27 27 H 1.09003 * 110.32494 * 359.97438 * 11 9 7 28 28 H 1.09001 * 110.40835 * 94.97720 * 12 11 9 29 29 H 1.09006 * 110.41117 * 217.41729 * 12 11 9 30 30 H 1.07998 * 121.08196 * 359.95960 * 15 14 13 31 31 H 1.08995 * 110.29022 * 136.08739 * 20 17 16 32 32 H 1.08997 * 110.28682 * 258.10899 * 20 17 16 33 33 H 1.09002 * 110.80009 * 91.98433 * 21 20 17 34 34 H 1.08995 * 110.80818 * 215.29915 * 21 20 17 35 35 H 1.08996 * 110.31320 * 281.86745 * 22 16 15 36 36 H 1.08991 * 110.31394 * 44.05187 * 22 16 15 37 37 H 1.09003 * 110.41268 * 201.79553 * 23 13 12 38 38 H 1.08994 * 110.51316 * 79.40122 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4119 2.0953 -1.3966 5 1 1.4913 2.6268 0.7830 6 1 3.5864 1.4173 0.6137 7 6 2.0045 -1.1940 -0.0005 8 1 1.4702 -2.1260 -0.1118 9 6 3.5035 -1.1987 0.1542 10 8 3.8773 -0.5646 1.3791 11 6 4.0420 -2.6436 0.1129 12 6 4.9884 -2.6869 -1.1060 13 7 4.5156 -1.5839 -1.9843 14 6 5.5139 -1.1868 -2.8671 15 6 5.9861 -2.0710 -3.8377 16 6 6.9800 -1.6237 -4.6908 17 6 7.4505 -0.3283 -4.5352 18 7 6.9440 0.4402 -3.5880 19 7 6.0197 0.0357 -2.7961 20 6 8.5251 -0.0541 -5.5647 21 6 8.3538 -1.1548 -6.6334 22 6 7.7032 -2.3019 -5.8296 23 6 4.1705 -0.4877 -1.0429 24 1 -0.4850 0.8400 -0.0004 25 1 3.5235 -0.9956 2.1690 26 1 4.5912 -2.8692 1.0270 27 1 3.2220 -3.3496 -0.0188 28 1 6.0178 -2.5096 -0.7944 29 1 4.9050 -3.6455 -1.6181 30 1 5.5891 -3.0720 -3.9204 31 1 8.3800 0.9304 -6.0095 32 1 9.5122 -0.1199 -5.1073 33 1 7.6934 -0.8187 -7.4329 34 1 9.3206 -1.4592 -7.0342 35 1 8.4681 -2.9759 -5.4442 36 1 6.9967 -2.8479 -6.4548 37 1 3.4726 0.2079 -1.5088 38 1 5.0702 0.0364 -0.7206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:41 Heat of formation + Delta-G solvation = 5.341909 kcal Electronic energy + Delta-G solvation = -21530.212904 eV Core-core repulsion = 18372.430435 eV Total energy + Delta-G solvation = -3157.782469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.54822 -40.47567 -38.09760 -36.87778 -34.51347 -33.85855 -32.06384 -30.60162 -30.10001 -28.50615 -26.63143 -25.21371 -24.03545 -22.44600 -21.72709 -21.35286 -19.35622 -18.70491 -18.03974 -17.26985 -16.96458 -16.64075 -16.34236 -15.74218 -15.39714 -15.03284 -15.00259 -14.54921 -14.29415 -14.04566 -13.91996 -13.81279 -13.59264 -13.30281 -12.89753 -12.79328 -12.35651 -12.19316 -12.13461 -12.03819 -11.91675 -11.83703 -11.35871 -11.03860 -10.83859 -10.66139 -10.44131 -10.30489 -9.51129 -8.40763 -6.48886 -0.20219 -0.10835 1.27239 1.33953 1.59150 2.26275 2.32324 2.46092 2.91662 2.95488 3.35047 3.43233 3.62559 3.72277 3.78453 3.90600 4.04486 4.14592 4.17735 4.25059 4.32651 4.44873 4.58382 4.73970 4.75219 4.76477 4.82913 4.90379 4.92431 4.97225 5.13036 5.18072 5.24420 5.28032 5.32360 5.48975 5.60437 5.90613 6.07590 6.61073 7.16253 7.32960 7.73850 8.73460 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.005222 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.364781 B = 5360.846989 C = 5754.142540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.043 3.957 3 Si 0.918 3.082 4 H -0.302 1.302 5 H -0.295 1.295 6 H -0.217 1.217 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.211 3.789 10 O -0.583 6.583 11 C -0.133 4.133 12 C 0.052 3.948 13 N -0.450 5.450 14 C 0.231 3.769 15 C -0.121 4.121 16 C -0.075 4.075 17 C 0.019 3.981 18 N -0.261 5.261 19 N -0.328 5.328 20 C -0.062 4.062 21 C -0.108 4.108 22 C -0.076 4.076 23 C 0.067 3.933 24 H 0.266 0.734 25 H 0.379 0.621 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.177 0.823 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.050 0.950 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.082 -8.648 -12.251 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.157 4.157 3 Si 0.746 3.254 4 H -0.230 1.230 5 H -0.222 1.222 6 H -0.139 1.139 7 C -0.569 4.569 8 H 0.070 0.930 9 C 0.171 3.829 10 O -0.391 6.391 11 C -0.171 4.171 12 C -0.073 4.073 13 N -0.170 5.170 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.086 4.086 17 C -0.130 4.130 18 N -0.101 5.101 19 N -0.173 5.173 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.113 4.113 23 C -0.061 4.061 24 H 0.075 0.925 25 H 0.228 0.772 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.194 0.806 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.733 -6.849 -12.120 24.149 hybrid contribution -0.590 -0.045 0.377 0.702 sum 19.143 -6.894 -11.743 23.492 Atomic orbital electron populations 1.70029 1.07853 1.27997 1.51203 1.25544 0.94976 1.02184 0.93016 0.86341 0.82329 0.79944 0.76835 1.22980 1.22240 1.13927 1.21607 0.91290 0.93500 1.50497 0.93040 1.19675 0.91737 0.89461 0.82064 1.86481 1.77194 1.58819 1.16565 1.22929 0.98849 0.97401 0.97901 1.23280 0.97231 0.94081 0.92660 1.62462 1.29459 1.09052 1.16016 1.21974 0.90146 0.92608 0.96105 1.21647 0.97329 1.02256 0.93873 1.22130 0.93752 0.95865 0.96888 1.24316 0.99086 0.92918 0.96727 1.72280 1.04455 1.30862 1.02481 1.73242 1.07857 1.16076 1.20102 1.21135 0.94923 1.01902 0.92169 1.22422 1.03467 0.92560 0.96156 1.21228 0.99494 0.98567 0.91972 1.22912 0.98241 0.92584 0.92329 0.92510 0.77156 0.88777 0.90436 0.92653 0.86250 0.80605 0.89320 0.87447 0.90092 0.86221 0.86555 0.87754 0.93214 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.00 13.96 21.45 0.30 -58.70 16 2 C 0.04 2.57 5.43 84.66 0.46 3.03 16 3 Si 0.92 49.31 24.05 68.60 1.65 50.96 16 4 H -0.30 -16.79 7.09 99.48 0.71 -16.09 16 5 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 6 H -0.22 -11.31 5.22 99.48 0.52 -10.80 16 7 C -0.53 -29.98 8.82 25.60 0.23 -29.76 16 8 H 0.05 3.13 7.60 -2.91 -0.02 3.11 16 9 C 0.21 9.85 0.90 -10.65 -0.01 9.84 16 10 O -0.58 -26.20 10.16 -148.98 -1.51 -27.71 16 11 C -0.13 -4.80 6.43 31.49 0.20 -4.60 16 12 C 0.05 1.67 6.08 86.42 0.53 2.20 16 13 N -0.45 -18.34 5.41 -686.95 -3.71 -22.05 16 14 C 0.23 8.73 6.24 133.11 0.83 9.56 16 15 C -0.12 -3.32 9.66 22.62 0.22 -3.10 16 16 C -0.08 -1.70 6.20 -19.62 -0.12 -1.82 16 17 C 0.02 0.52 7.42 42.83 0.32 0.84 16 18 N -0.26 -9.88 11.50 -47.01 -0.54 -10.42 16 19 N -0.33 -14.05 9.62 -55.06 -0.53 -14.58 16 20 C -0.06 -0.96 6.76 30.51 0.21 -0.76 16 21 C -0.11 -0.91 7.08 31.55 0.22 -0.69 16 22 C -0.08 -0.81 6.77 30.43 0.21 -0.60 16 23 C 0.07 3.23 3.59 86.45 0.31 3.54 16 24 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 25 H 0.38 14.28 9.08 -74.06 -0.67 13.61 16 26 H 0.09 2.87 7.98 -2.39 -0.02 2.85 16 27 H 0.08 2.85 7.42 -2.39 -0.02 2.83 16 28 H 0.06 1.67 7.97 -2.39 -0.02 1.66 16 29 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 30 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 2.74 4.85 -2.39 -0.01 2.73 16 38 H 0.05 2.43 7.12 -2.39 -0.02 2.41 16 Total: -1.00 -79.92 300.87 -0.53 -80.45 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.22 Total: 14.35 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 3.60 Total: -12.30 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.48 Total: -105.74 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.51 Total: -27.71 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.65 Total: 50.96 kcal Total: -79.92 -0.53 -80.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.789 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds