Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 H 1.09003 * 109.62866 * 299.59892 * 14 12 11 16 16 C 1.53306 * 109.63033 * 179.00302 * 14 12 11 17 17 C 1.52820 * 108.51555 * 170.52238 * 16 14 12 18 18 C 1.50447 * 110.43432 * 51.07678 * 17 16 14 19 19 N 1.32890 * 118.52507 * 162.52229 * 18 17 16 20 20 C 1.31611 * 121.06184 * 179.44497 * 19 18 17 21 21 N 1.31812 * 121.66503 * 359.97438 * 20 19 18 22 22 C 1.32192 * 120.64502 * 0.19100 * 21 20 19 23 23 C 1.37760 * 122.58325 * 342.19527 * 18 17 16 24 24 C 1.50339 * 122.80465 * 0.70730 * 23 18 17 25 25 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 27 27 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 28 28 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 29 29 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 30 30 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 31 31 H 1.09001 * 109.63253 * 290.23677 * 16 14 12 32 32 H 1.09006 * 109.62889 * 50.82079 * 16 14 12 33 33 H 1.09001 * 109.30343 * 290.78372 * 17 16 14 34 34 H 1.09001 * 109.14780 * 171.27538 * 17 16 14 35 35 H 1.07995 * 119.16499 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.36415 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.31014 * 222.13305 * 24 23 18 38 38 H 1.08999 * 109.30838 * 102.73155 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3994 -6.0980 0.0023 14 6 1.4330 -7.4031 0.0086 15 1 0.8144 -7.4640 0.9040 16 6 2.4256 -8.5711 -0.0172 17 6 1.6555 -9.8680 0.2286 18 6 0.4782 -9.9645 -0.7031 19 7 -0.0921 -11.1510 -0.8844 20 6 -1.1313 -11.2905 -1.6798 21 7 -1.6496 -10.2660 -2.3273 22 6 -1.1328 -9.0561 -2.1982 23 6 -0.0331 -8.8717 -1.3680 24 6 0.5479 -7.4915 -1.2342 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.5427 -4.9308 0.0011 31 1 2.9149 -8.6146 -0.9903 32 1 3.1721 -8.4347 0.7654 33 1 1.3018 -9.8872 1.2595 34 1 2.3195 -10.7157 0.0595 35 1 -1.5711 -12.2690 -1.8044 36 1 -1.5609 -8.2199 -2.7312 37 1 -0.2615 -6.7661 -1.1524 38 1 1.1439 -7.2641 -2.1180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592618134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -17.732301 kcal Electronic energy + Delta-G solvation = -20303.498159 eV Core-core repulsion = 17144.715117 eV Total energy + Delta-G solvation = -3158.783042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.61926 -39.64534 -36.84531 -34.93935 -34.32065 -32.89939 -31.67040 -30.84728 -29.33700 -25.74584 -24.96889 -24.01966 -23.26208 -21.43754 -20.82404 -19.63524 -18.01915 -17.21881 -16.83670 -16.42360 -15.61275 -15.25565 -15.19192 -14.54716 -14.30492 -14.26145 -14.08906 -13.98139 -13.47092 -13.29106 -12.91021 -12.37516 -12.29561 -11.98821 -11.37578 -11.25892 -11.16159 -11.06968 -11.03271 -10.67946 -10.62399 -10.38141 -9.84182 -9.50683 -9.47062 -9.43580 -9.21239 -8.60266 -8.40878 -6.13410 -4.16413 0.63737 0.78239 2.87752 3.26687 3.33018 3.36502 3.47398 3.55070 3.73701 3.94742 4.17843 4.31215 4.37400 4.40577 4.62616 4.80908 5.00021 5.04890 5.16838 5.23834 5.26191 5.27340 5.37890 5.53202 5.62006 5.79384 5.89802 6.04209 6.17927 6.28726 6.29109 6.68093 6.72192 6.84150 7.46355 7.56212 7.82348 7.84441 7.93094 8.22962 8.56169 8.89577 9.48792 10.98118 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032850 B = 0.003154 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.146609 B = 8874.223819 C = 9568.216682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.721 5.721 12 C 0.511 3.489 13 O -0.547 6.547 14 C -0.110 4.110 15 H 0.101 0.899 16 C -0.099 4.099 17 C -0.073 4.073 18 C 0.181 3.819 19 N -0.522 5.522 20 C 0.286 3.714 21 N -0.523 5.523 22 C 0.152 3.848 23 C -0.175 4.175 24 C -0.066 4.066 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.397 0.603 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.195 0.805 36 H 0.170 0.830 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 -20.126 -1.680 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.370 5.370 12 C 0.296 3.704 13 O -0.425 6.425 14 C -0.131 4.131 15 H 0.119 0.881 16 C -0.137 4.137 17 C -0.111 4.111 18 C 0.037 3.963 19 N -0.236 5.236 20 C -0.002 4.002 21 N -0.237 5.237 22 C -0.015 4.015 23 C -0.179 4.179 24 C -0.104 4.104 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.211 0.789 36 H 0.188 0.812 37 H 0.109 0.891 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.016 -20.896 -1.784 21.069 hybrid contribution 0.074 1.753 0.024 1.755 sum -1.942 -19.143 -1.760 19.322 Atomic orbital electron populations 1.69950 1.06087 1.26921 1.50322 1.24993 0.94896 0.99426 0.94946 0.86515 0.79850 0.82992 0.78225 1.20540 1.21147 1.19723 1.21049 0.93247 0.90397 1.51433 0.92260 1.19322 0.94186 0.91147 0.97822 1.21738 0.96066 0.81534 1.00824 1.46371 1.10516 1.06613 1.73524 1.20349 0.88114 0.85238 0.76737 1.90682 1.13911 1.87686 1.50198 1.21384 0.97869 0.93991 0.99886 0.88112 1.21424 0.97035 0.90890 1.04363 1.20498 0.93153 0.99628 0.97832 1.21405 0.94415 0.87631 0.92871 1.68404 1.11012 1.25893 1.18332 1.24891 0.88910 0.98257 0.88096 1.68423 1.31510 1.00291 1.23428 1.23344 0.90612 0.95103 0.92477 1.21137 0.98801 0.97749 1.00253 1.20326 0.99317 0.92245 0.98558 0.92816 0.95954 0.95955 0.92538 0.92520 0.76924 0.90699 0.89225 0.88920 0.88769 0.78896 0.81246 0.89146 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.41 16 11 N -0.72 -11.41 5.46 -60.30 -0.33 -11.74 16 12 C 0.51 7.68 7.14 -10.98 -0.08 7.60 16 13 O -0.55 -10.34 15.84 5.56 0.09 -10.25 16 14 C -0.11 -1.15 2.55 -91.70 -0.23 -1.39 16 15 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 16 C -0.10 -0.98 4.71 -26.67 -0.13 -1.11 16 17 C -0.07 -0.63 5.96 -28.10 -0.17 -0.80 16 18 C 0.18 1.85 6.62 -82.43 -0.55 1.30 16 19 N -0.52 -5.65 10.32 -11.00 -0.11 -5.77 16 20 C 0.29 2.81 12.29 -92.30 -1.13 1.68 16 21 N -0.52 -5.55 10.44 -14.54 -0.15 -5.70 16 22 C 0.15 1.44 10.94 -17.11 -0.19 1.25 16 23 C -0.18 -1.69 5.73 -104.68 -0.60 -2.29 16 24 C -0.07 -0.60 4.87 -28.15 -0.14 -0.74 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 5.33 8.09 -40.82 -0.33 5.00 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.09 0.94 7.80 -51.93 -0.40 0.54 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 38 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -32.37 321.33 -9.06 -41.44 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.33 Total: 0.93 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.79 Total: -4.87 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.14 Total: -48.10 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.37 -9.06 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.704 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds