Wall clock time and date at job start Mon Mar 30 2020 01:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 H 1.09003 * 109.62866 * 299.59892 * 14 12 11 16 16 C 1.53306 * 109.63033 * 179.00302 * 14 12 11 17 17 C 1.52820 * 108.51555 * 170.52238 * 16 14 12 18 18 C 1.50447 * 110.43432 * 51.07678 * 17 16 14 19 19 N 1.32890 * 118.52507 * 162.52229 * 18 17 16 20 20 C 1.31611 * 121.06184 * 179.44497 * 19 18 17 21 21 N 1.31812 * 121.66503 * 359.97438 * 20 19 18 22 22 C 1.32192 * 120.64502 * 0.19100 * 21 20 19 23 23 C 1.37760 * 122.58325 * 342.19527 * 18 17 16 24 24 C 1.50339 * 122.80465 * 0.70730 * 23 18 17 25 25 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 27 27 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 28 28 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 29 29 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 30 30 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 31 31 H 1.09001 * 109.63253 * 290.23677 * 16 14 12 32 32 H 1.09006 * 109.62889 * 50.82079 * 16 14 12 33 33 H 1.09001 * 109.30343 * 290.78372 * 17 16 14 34 34 H 1.09001 * 109.14780 * 171.27538 * 17 16 14 35 35 H 1.07995 * 119.16499 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.36415 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.31014 * 222.13305 * 24 23 18 38 38 H 1.08999 * 109.30838 * 102.73155 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3994 -6.0980 0.0023 14 6 1.4330 -7.4031 0.0086 15 1 0.8144 -7.4640 0.9040 16 6 2.4256 -8.5711 -0.0172 17 6 1.6555 -9.8680 0.2286 18 6 0.4782 -9.9645 -0.7031 19 7 -0.0921 -11.1510 -0.8844 20 6 -1.1313 -11.2905 -1.6798 21 7 -1.6496 -10.2660 -2.3273 22 6 -1.1328 -9.0561 -2.1982 23 6 -0.0331 -8.8717 -1.3680 24 6 0.5479 -7.4915 -1.2342 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.5427 -4.9308 0.0011 31 1 2.9149 -8.6146 -0.9903 32 1 3.1721 -8.4347 0.7654 33 1 1.3018 -9.8872 1.2595 34 1 2.3195 -10.7157 0.0595 35 1 -1.5711 -12.2690 -1.8044 36 1 -1.5609 -8.2199 -2.7312 37 1 -0.2615 -6.7661 -1.1524 38 1 1.1439 -7.2641 -2.1180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592618134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:57 Heat of formation + Delta-G solvation = -38.163786 kcal Electronic energy + Delta-G solvation = -20304.384135 eV Core-core repulsion = 17144.715117 eV Total energy + Delta-G solvation = -3159.669018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37311 -40.84254 -37.77405 -36.54074 -35.10881 -34.75984 -32.48456 -32.01108 -30.77549 -27.07511 -26.11218 -25.09470 -23.99022 -22.99530 -22.09119 -20.68266 -18.90164 -18.51480 -17.95335 -17.74822 -16.84271 -16.55315 -16.37963 -16.10001 -15.52587 -15.17475 -14.89463 -14.80963 -14.58083 -14.38932 -14.27305 -13.94151 -13.21553 -13.17509 -12.92695 -12.83335 -12.53530 -12.21477 -12.17991 -11.95521 -11.84734 -11.63376 -11.43247 -11.37163 -10.70550 -10.59328 -10.20557 -10.17533 -9.97750 -8.23473 -6.33363 -0.08192 0.05103 1.42302 1.42686 1.53795 1.65986 2.25940 2.46008 2.75187 3.03528 3.11607 3.28049 3.45431 3.49521 3.62365 3.79049 3.99164 4.24485 4.28802 4.34674 4.46312 4.52741 4.56263 4.56822 4.67364 4.82604 4.88699 4.90714 5.06741 5.12028 5.24471 5.33347 5.47774 5.52023 5.61282 5.80780 5.99819 6.18041 6.66124 6.80273 7.09977 7.31093 7.36033 8.88098 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032850 B = 0.003154 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.146609 B = 8874.223819 C = 9568.216682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.715 5.715 12 C 0.513 3.487 13 O -0.586 6.586 14 C -0.098 4.098 15 H 0.123 0.877 16 C -0.094 4.094 17 C -0.065 4.065 18 C 0.169 3.831 19 N -0.538 5.538 20 C 0.281 3.719 21 N -0.541 5.541 22 C 0.149 3.851 23 C -0.178 4.178 24 C -0.060 4.060 25 H 0.265 0.735 26 H 0.011 0.989 27 H 0.009 0.991 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.411 0.589 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.219 0.781 36 H 0.192 0.808 37 H 0.107 0.893 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -20.607 -1.680 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.366 5.366 12 C 0.301 3.699 13 O -0.466 6.466 14 C -0.119 4.119 15 H 0.140 0.860 16 C -0.133 4.133 17 C -0.102 4.102 18 C 0.025 3.975 19 N -0.253 5.253 20 C -0.007 4.007 21 N -0.254 5.254 22 C -0.018 4.018 23 C -0.182 4.182 24 C -0.099 4.099 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.247 0.753 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.235 0.765 36 H 0.209 0.791 37 H 0.126 0.874 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.371 -21.400 -1.786 21.605 hybrid contribution 0.170 1.856 0.012 1.864 sum -2.201 -19.543 -1.773 19.747 Atomic orbital electron populations 1.70045 1.07443 1.27946 1.51064 1.25828 0.95769 1.02954 0.94501 0.85495 0.78660 0.78708 0.78495 1.19807 1.20598 1.19158 1.21486 0.93561 0.92077 1.51410 0.92440 1.19131 0.94233 0.91676 0.96440 1.21202 0.95015 0.82449 0.99741 1.46175 1.11122 1.05546 1.73760 1.21084 0.87775 0.86086 0.74999 1.90669 1.15930 1.88282 1.51765 1.21353 0.97872 0.91045 1.01649 0.85961 1.21361 0.96878 0.91383 1.03630 1.20449 0.92665 0.98866 0.98262 1.21673 0.94771 0.87817 0.93190 1.68444 1.11624 1.26182 1.19029 1.25436 0.88593 0.99208 0.87456 1.68489 1.32076 1.00857 1.24026 1.23745 0.90365 0.95500 0.92209 1.21125 0.98985 0.97575 1.00517 1.20288 0.99438 0.92636 0.97496 0.92573 0.97090 0.97300 0.93729 0.93560 0.75297 0.91677 0.89879 0.87592 0.88111 0.76463 0.79097 0.87436 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.12 13.29 21.45 0.28 -52.83 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -29.83 9.11 25.60 0.23 -29.59 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 9 C 0.02 1.09 5.09 29.85 0.15 1.25 16 10 C 0.14 5.67 5.61 86.38 0.48 6.16 16 11 N -0.72 -22.09 5.46 -463.06 -2.53 -24.62 16 12 C 0.51 14.95 7.14 87.65 0.63 15.58 16 13 O -0.59 -22.08 15.84 -3.04 -0.05 -22.13 16 14 C -0.10 -1.88 2.55 -11.50 -0.03 -1.91 16 15 H 0.12 1.90 8.11 -2.39 -0.02 1.88 16 16 C -0.09 -1.75 4.71 30.64 0.14 -1.61 16 17 C -0.06 -1.00 5.96 29.71 0.18 -0.82 16 18 C 0.17 3.16 6.62 42.21 0.28 3.44 16 19 N -0.54 -10.77 10.32 -188.72 -1.95 -12.72 16 20 C 0.28 5.05 12.29 180.93 2.22 7.27 16 21 N -0.54 -10.56 10.44 -199.92 -2.09 -12.65 16 22 C 0.15 2.52 10.94 84.83 0.93 3.45 16 23 C -0.18 -3.07 5.73 -19.90 -0.11 -3.19 16 24 C -0.06 -0.97 4.87 29.68 0.14 -0.83 16 25 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.41 10.48 8.09 -92.70 -0.75 9.73 16 31 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 32 H 0.08 1.68 7.80 -2.38 -0.02 1.66 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.11 1.38 7.82 -2.39 -0.02 1.37 16 38 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 Total: -1.00 -68.85 321.33 1.73 -67.12 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.32 Total: 12.82 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 5.71 Total: 0.12 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -6.28 Total: -102.82 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.85 1.73 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.960 kcal (2) G-P(sol) polarization free energy of solvation -68.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds