Wall clock time and date at job start Mon Mar 30 2020 01:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00525 * 2 1 4 4 C 1.53000 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.87665 * 186.99390 * 4 3 2 6 6 C 1.54319 * 109.88477 * 308.19271 * 4 3 2 7 7 C 1.55145 * 103.01809 * 141.69132 * 6 4 3 8 8 H 1.08999 * 110.98786 * 82.43032 * 7 6 4 9 9 O 1.42895 * 110.98955 * 206.21891 * 7 6 4 10 10 C 1.54908 * 101.65045 * 324.34493 * 7 6 4 11 11 N 1.47440 * 109.88986 * 65.96061 * 4 3 2 12 12 C 1.46901 * 110.99858 * 3.85743 * 11 4 3 13 13 C 1.53001 * 109.47286 * 172.19366 * 12 11 4 14 14 C 1.53002 * 109.47398 * 179.97438 * 13 12 11 15 15 S 1.81000 * 109.46918 * 179.97438 * 14 13 12 16 16 C 1.76201 * 99.99754 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99802 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00258 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99884 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47045 * 300.00122 * 20 18 16 23 23 H 1.48499 * 109.47302 * 59.99920 * 20 18 16 24 24 H 1.08995 * 109.46945 * 59.99918 * 1 2 3 25 25 H 1.08994 * 109.47394 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46817 * 300.00565 * 1 2 3 27 27 H 1.09001 * 109.47360 * 59.99337 * 3 2 1 28 28 H 1.09001 * 109.46810 * 300.00298 * 3 2 1 29 29 H 1.09000 * 110.70460 * 260.07197 * 6 4 3 30 30 H 1.08998 * 110.70908 * 23.13180 * 6 4 3 31 31 H 0.96702 * 113.99812 * 179.97438 * 9 7 6 32 32 H 1.08997 * 110.37430 * 278.24159 * 10 7 6 33 33 H 1.09000 * 110.37422 * 155.90055 * 10 7 6 34 34 H 1.08997 * 109.47812 * 52.18896 * 12 11 4 35 35 H 1.09005 * 109.46986 * 292.18535 * 12 11 4 36 36 H 1.08997 * 109.47078 * 59.99081 * 13 12 11 37 37 H 1.09004 * 109.46962 * 300.00060 * 13 12 11 38 38 H 1.09000 * 109.46686 * 60.00166 * 14 13 12 39 39 H 1.08997 * 109.46832 * 299.99880 * 14 13 12 40 40 H 0.96994 * 120.00004 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 1 3.9854 2.1694 0.1242 6 6 3.9884 0.2483 1.1395 7 6 5.1640 -0.5371 0.5008 8 1 6.0888 0.0378 0.5477 9 8 5.3252 -1.8131 1.1234 10 6 4.6795 -0.6900 -0.9626 11 7 3.9905 0.5821 -1.2671 12 6 2.8617 0.3637 -2.1815 13 6 3.3901 -0.0773 -3.5480 14 6 2.2144 -0.3053 -4.5002 15 16 2.8398 -0.8262 -6.1169 16 6 1.3192 -1.0128 -6.9874 17 1 0.3828 -0.8138 -6.4874 18 6 1.3250 -1.4146 -8.3160 19 7 2.4662 -1.6567 -8.9255 20 14 -0.2870 -1.6118 -9.2391 21 1 -0.0100 -2.0473 -10.6315 22 1 -1.1251 -2.6319 -8.5593 23 1 -1.0075 -0.3134 -9.2600 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 4.3318 0.8251 1.9983 30 1 3.1821 -0.4262 1.4276 31 1 6.0481 -2.3409 0.7572 32 1 3.9862 -1.5268 -1.0473 33 1 5.5290 -0.8309 -1.6309 34 1 2.2985 1.2904 -2.2915 35 1 2.2107 -0.4112 -1.7766 36 1 3.9533 -1.0040 -3.4380 37 1 4.0412 0.6975 -3.9530 38 1 1.6511 0.6213 -4.6103 39 1 1.5638 -1.0803 -4.0950 40 1 2.4702 -1.9379 -9.8538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593067594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:33 Heat of formation + Delta-G solvation = -93.070883 kcal Electronic energy + Delta-G solvation = -19743.405372 eV Core-core repulsion = 16684.506604 eV Total energy + Delta-G solvation = -3058.898768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16942 -37.59048 -36.13200 -33.71855 -32.39873 -30.41481 -29.96024 -26.76441 -25.75405 -25.07712 -24.58844 -21.90404 -20.75798 -19.75205 -17.60277 -17.47679 -16.92909 -16.22302 -15.62374 -15.32088 -15.16407 -14.78096 -14.53502 -14.03920 -13.73215 -13.38026 -13.18593 -12.89953 -12.75981 -12.21042 -12.03405 -11.91029 -11.66373 -11.35198 -11.27580 -11.03579 -10.96289 -10.75551 -10.65273 -10.54049 -10.35074 -10.08724 -9.70797 -9.47564 -9.02242 -8.25851 -8.21481 -6.48464 -6.19554 -3.89300 3.23363 3.24701 3.29292 3.49682 3.59744 3.75860 4.25409 4.33581 4.50636 4.50961 4.84655 4.96462 5.04023 5.10143 5.16153 5.19502 5.24186 5.36503 5.41472 5.46504 5.54727 5.55466 5.68135 5.71187 5.83280 5.86857 5.94821 6.08672 6.10917 6.23486 6.42291 6.66923 6.81964 6.93307 6.98287 7.12741 7.48649 7.62940 8.39377 9.26439 10.88654 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.003779 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.893616 B = 7407.297678 C = 8072.484816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.039 3.961 4 C 0.075 3.925 5 H 0.100 0.900 6 C -0.127 4.127 7 C 0.093 3.907 8 H 0.070 0.930 9 O -0.562 6.562 10 C 0.015 3.985 11 N -0.516 5.516 12 C 0.044 3.956 13 C -0.093 4.093 14 C -0.110 4.110 15 S -0.133 6.133 16 C -0.516 4.516 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.917 3.083 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.274 1.274 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.380 0.620 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 4.960 20.573 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C -0.039 4.039 4 C -0.033 4.033 5 H 0.118 0.882 6 C -0.165 4.165 7 C 0.033 3.967 8 H 0.088 0.912 9 O -0.367 6.367 10 C -0.114 4.114 11 N -0.241 5.241 12 C -0.085 4.085 13 C -0.132 4.132 14 C -0.259 4.259 15 S 0.095 5.905 16 C -0.664 4.664 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.506 5.506 20 Si 0.744 3.256 21 H -0.208 1.208 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.819 5.123 20.133 20.965 hybrid contribution -2.635 -0.368 -0.252 2.672 sum 0.184 4.755 19.881 20.443 Atomic orbital electron populations 1.22740 0.81074 1.02935 0.99938 1.87966 1.19696 1.27359 1.95004 1.23122 0.94214 0.85586 1.00952 1.22568 0.91861 0.99399 0.89516 0.88203 1.22713 0.98210 0.98077 0.97511 1.22922 0.97784 0.84482 0.91505 0.91204 1.86494 1.57694 1.29736 1.62745 1.23708 0.99381 0.92238 0.96030 1.63696 1.26400 1.23307 1.10699 1.22692 0.91996 1.01210 0.92610 1.21265 0.97470 1.01706 0.92768 1.23207 1.00036 1.02392 1.00245 1.84617 1.14794 1.88074 1.03006 1.22654 0.92123 1.52920 0.98752 0.91108 1.25002 0.97387 0.94770 0.96578 1.70013 1.25114 1.43494 1.11959 0.86241 0.82218 0.78714 0.78447 1.20815 1.19973 1.19965 0.93778 0.89575 0.94289 0.93019 0.91691 0.90797 0.89164 0.77313 0.92100 0.90062 0.91222 0.91729 0.91967 0.91185 0.92395 0.92424 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.54 6.90 -35.23 -0.24 -4.78 16 3 C 0.04 0.39 4.88 37.16 0.18 0.57 16 4 C 0.07 0.79 3.85 -66.73 -0.26 0.54 16 5 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 6 C -0.13 -1.32 6.09 -24.91 -0.15 -1.47 16 7 C 0.09 0.98 4.42 -24.59 -0.11 0.87 16 8 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 9 O -0.56 -6.02 13.47 -35.23 -0.47 -6.50 16 10 C 0.01 0.18 5.41 -2.30 -0.01 0.17 16 11 N -0.52 -6.64 5.18 -223.35 -1.16 -7.79 16 12 C 0.04 0.63 3.60 -3.82 -0.01 0.62 16 13 C -0.09 -1.62 5.23 -26.73 -0.14 -1.76 16 14 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 15 S -0.13 -3.57 21.44 -107.50 -2.30 -5.88 16 16 C -0.52 -15.06 9.50 30.94 0.29 -14.77 16 17 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 20 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.68 6.00 -51.93 -0.31 0.37 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.10 6.91 -51.93 -0.36 0.75 16 31 H 0.38 2.49 9.12 45.56 0.42 2.91 16 32 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.98 6.06 -51.93 -0.31 0.66 16 35 H 0.06 1.00 5.60 -51.93 -0.29 0.70 16 36 H 0.06 1.10 7.42 -51.93 -0.39 0.72 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 39 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -33.06 330.69 -8.30 -41.36 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.84 Total: 1.43 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 1.02 Total: -13.96 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.42 Total: -33.38 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.72 Total: -11.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.06 -8.30 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593067594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.711 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds