Wall clock time and date at job start Mon Mar 30 2020 01:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00525 * 2 1 4 4 C 1.53000 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.87665 * 186.99390 * 4 3 2 6 6 C 1.54319 * 109.88477 * 308.19271 * 4 3 2 7 7 C 1.55145 * 103.01809 * 141.69132 * 6 4 3 8 8 H 1.08999 * 110.98786 * 82.43032 * 7 6 4 9 9 O 1.42895 * 110.98955 * 206.21891 * 7 6 4 10 10 C 1.54908 * 101.65045 * 324.34493 * 7 6 4 11 11 N 1.47440 * 109.88986 * 65.96061 * 4 3 2 12 12 C 1.46901 * 110.99858 * 3.85743 * 11 4 3 13 13 C 1.53001 * 109.47286 * 172.19366 * 12 11 4 14 14 C 1.53002 * 109.47398 * 179.97438 * 13 12 11 15 15 S 1.81000 * 109.46918 * 179.97438 * 14 13 12 16 16 C 1.76201 * 99.99754 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99802 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00258 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99884 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47135 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47045 * 300.00122 * 20 18 16 23 23 H 1.48499 * 109.47302 * 59.99920 * 20 18 16 24 24 H 1.08995 * 109.46945 * 59.99918 * 1 2 3 25 25 H 1.08994 * 109.47394 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46817 * 300.00565 * 1 2 3 27 27 H 1.09001 * 109.47360 * 59.99337 * 3 2 1 28 28 H 1.09001 * 109.46810 * 300.00298 * 3 2 1 29 29 H 1.09000 * 110.70460 * 260.07197 * 6 4 3 30 30 H 1.08998 * 110.70908 * 23.13180 * 6 4 3 31 31 H 0.96702 * 113.99812 * 179.97438 * 9 7 6 32 32 H 1.08997 * 110.37430 * 278.24159 * 10 7 6 33 33 H 1.09000 * 110.37422 * 155.90055 * 10 7 6 34 34 H 1.08997 * 109.47812 * 52.18896 * 12 11 4 35 35 H 1.09005 * 109.46986 * 292.18535 * 12 11 4 36 36 H 1.08997 * 109.47078 * 59.99081 * 13 12 11 37 37 H 1.09004 * 109.46962 * 300.00060 * 13 12 11 38 38 H 1.09000 * 109.46686 * 60.00166 * 14 13 12 39 39 H 1.08997 * 109.46832 * 299.99880 * 14 13 12 40 40 H 0.96994 * 120.00004 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 1 3.9854 2.1694 0.1242 6 6 3.9884 0.2483 1.1395 7 6 5.1640 -0.5371 0.5008 8 1 6.0888 0.0378 0.5477 9 8 5.3252 -1.8131 1.1234 10 6 4.6795 -0.6900 -0.9626 11 7 3.9905 0.5821 -1.2671 12 6 2.8617 0.3637 -2.1815 13 6 3.3901 -0.0773 -3.5480 14 6 2.2144 -0.3053 -4.5002 15 16 2.8398 -0.8262 -6.1169 16 6 1.3192 -1.0128 -6.9874 17 1 0.3828 -0.8138 -6.4874 18 6 1.3250 -1.4146 -8.3160 19 7 2.4662 -1.6567 -8.9255 20 14 -0.2870 -1.6118 -9.2391 21 1 -0.0100 -2.0473 -10.6315 22 1 -1.1251 -2.6319 -8.5593 23 1 -1.0075 -0.3134 -9.2600 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 4.3318 0.8251 1.9983 30 1 3.1821 -0.4262 1.4276 31 1 6.0481 -2.3409 0.7572 32 1 3.9862 -1.5268 -1.0473 33 1 5.5290 -0.8309 -1.6309 34 1 2.2985 1.2904 -2.2915 35 1 2.2107 -0.4112 -1.7766 36 1 3.9533 -1.0040 -3.4380 37 1 4.0412 0.6975 -3.9530 38 1 1.6511 0.6213 -4.6103 39 1 1.5638 -1.0803 -4.0950 40 1 2.4702 -1.9379 -9.8538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593067594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:32 Heat of formation + Delta-G solvation = -118.296883 kcal Electronic energy + Delta-G solvation = -19744.499254 eV Core-core repulsion = 16684.506604 eV Total energy + Delta-G solvation = -3059.992650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07543 -38.41102 -37.06797 -34.99587 -34.59314 -31.38421 -30.98851 -27.85621 -27.54528 -26.35789 -25.56917 -23.10944 -21.79989 -20.72377 -19.56607 -18.43062 -17.82445 -17.07914 -16.89922 -16.69464 -16.50767 -16.11172 -15.85613 -15.42969 -14.79180 -14.76997 -14.27803 -14.22825 -13.79695 -13.45531 -13.10516 -13.05756 -12.99402 -12.88151 -12.78014 -12.57266 -12.34395 -12.16449 -11.88804 -11.63450 -11.49203 -11.31916 -11.13887 -10.93213 -10.57845 -10.32959 -9.22980 -8.67480 -8.37350 -6.14158 1.30630 1.40473 1.47243 1.73513 2.28091 2.69580 2.88580 2.96684 3.30750 3.49399 3.64543 3.64759 4.01666 4.06021 4.15320 4.22917 4.33140 4.36688 4.39823 4.45963 4.51192 4.56034 4.63556 4.69972 4.75820 4.82342 4.88846 4.92133 4.98682 5.03284 5.20753 5.30225 5.32773 5.38598 5.97448 6.05097 6.17481 6.18775 6.85840 7.04363 8.72029 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.003779 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.893616 B = 7407.297678 C = 8072.484816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.036 3.964 4 C 0.073 3.927 5 H 0.121 0.879 6 C -0.123 4.123 7 C 0.098 3.902 8 H 0.089 0.911 9 O -0.577 6.577 10 C 0.014 3.986 11 N -0.522 5.522 12 C 0.059 3.941 13 C -0.081 4.081 14 C -0.083 4.083 15 S -0.197 6.197 16 C -0.540 4.540 17 H 0.072 0.928 18 C 0.016 3.984 19 N -0.908 5.908 20 Si 0.994 3.006 21 H -0.274 1.274 22 H -0.265 1.265 23 H -0.264 1.264 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 5.878 21.795 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.041 4.041 4 C -0.035 4.035 5 H 0.139 0.861 6 C -0.162 4.162 7 C 0.039 3.961 8 H 0.106 0.894 9 O -0.385 6.385 10 C -0.115 4.115 11 N -0.247 5.247 12 C -0.070 4.070 13 C -0.120 4.120 14 C -0.233 4.233 15 S 0.031 5.969 16 C -0.688 4.688 17 H 0.090 0.910 18 C -0.189 4.189 19 N -0.544 5.544 20 Si 0.816 3.184 21 H -0.199 1.199 22 H -0.190 1.190 23 H -0.188 1.188 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.246 0.754 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.019 6.040 21.371 22.299 hybrid contribution -2.329 -0.655 -0.548 2.481 sum -0.311 5.386 20.822 21.510 Atomic orbital electron populations 1.22830 0.80160 1.03244 1.00726 1.87935 1.20836 1.28467 1.95156 1.23188 0.93858 0.85138 1.01867 1.22736 0.92423 1.00093 0.88204 0.86106 1.22695 0.97482 0.97859 0.98125 1.22930 0.98562 0.84721 0.89920 0.89356 1.86458 1.58839 1.30164 1.63016 1.23704 0.98763 0.91277 0.97710 1.63666 1.25685 1.23422 1.11923 1.22441 0.92316 1.01181 0.91082 1.21150 0.95879 1.01272 0.93713 1.23108 1.01106 1.02083 0.96972 1.84636 1.16125 1.88754 1.07349 1.23010 0.92533 1.53572 0.99685 0.90990 1.26070 1.01514 0.93876 0.97399 1.70148 1.27686 1.44084 1.12478 0.85071 0.77134 0.79197 0.77040 1.19862 1.18966 1.18821 0.93977 0.89622 0.92449 0.90782 0.92026 0.88628 0.91164 0.75430 0.94430 0.90176 0.90378 0.92563 0.92703 0.91707 0.91939 0.92551 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.40 -9.18 6.90 -148.98 -1.03 -10.21 16 3 C 0.04 0.67 4.88 71.98 0.35 1.02 16 4 C 0.07 1.38 3.85 45.26 0.17 1.56 16 5 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 6 C -0.12 -2.31 6.09 31.78 0.19 -2.11 16 7 C 0.10 1.90 4.42 31.98 0.14 2.04 16 8 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 9 O -0.58 -11.61 13.47 -148.98 -2.01 -13.62 16 10 C 0.01 0.33 5.41 86.77 0.47 0.80 16 11 N -0.52 -12.73 5.18 -860.56 -4.46 -17.19 16 12 C 0.06 1.66 3.60 86.30 0.31 1.97 16 13 C -0.08 -2.82 5.23 30.60 0.16 -2.66 16 14 C -0.08 -3.51 5.67 71.98 0.41 -3.10 16 15 S -0.20 -10.83 21.44 -56.49 -1.21 -12.04 16 16 C -0.54 -31.87 9.50 67.95 0.65 -31.22 16 17 H 0.07 4.08 7.80 -2.91 -0.02 4.05 16 18 C 0.02 0.95 5.49 84.86 0.47 1.41 16 19 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 20 Si 0.99 44.33 29.55 68.60 2.03 46.36 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 24 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.16 6.00 -2.39 -0.01 1.15 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.63 6.91 -2.39 -0.02 1.61 16 31 H 0.40 4.72 9.12 -74.06 -0.68 4.04 16 32 H 0.04 1.07 7.66 -2.39 -0.02 1.05 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.08 6.06 -2.39 -0.01 2.06 16 35 H 0.06 1.71 5.60 -2.38 -0.01 1.70 16 36 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.06 2.56 8.14 -2.40 -0.02 2.55 16 39 H 0.06 2.37 8.14 -2.40 -0.02 2.36 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -71.31 330.69 -1.48 -72.78 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.34 Total: 17.77 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.57 Total: -28.57 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -4.17 Total: -72.47 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -3.04 Total: -23.82 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.21 Total: -12.04 kcal Total: -71.31 -1.48 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593067594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.515 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds