Wall clock time and date at job start Mon Mar 30 2020 01:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34708 * 116.99996 * 2 1 4 4 O 1.21469 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.47741 * 119.99975 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.11798 * 0.23721 * 5 3 2 7 7 C 1.37968 * 120.00189 * 180.26771 * 6 5 3 8 8 C 1.38250 * 120.23170 * 359.49787 * 7 6 5 9 9 C 1.38986 * 120.23366 * 0.24661 * 8 7 6 10 10 N 1.39706 * 120.00487 * 180.02562 * 9 8 7 11 11 C 1.46502 * 120.00224 * 0.02562 * 10 9 8 12 12 C 1.52999 * 109.47400 * 180.72179 * 11 10 9 13 13 C 1.50700 * 115.54849 * 65.12596 * 12 11 10 14 14 H 1.08001 * 119.99748 * 265.35627 * 13 12 11 15 15 C 1.37874 * 120.00282 * 85.35346 * 13 12 11 16 16 N 1.31519 * 119.99962 * 353.37591 * 15 13 12 17 17 Si 1.86800 * 120.00267 * 173.37967 * 15 13 12 18 18 H 1.48499 * 109.47209 * 90.00074 * 17 15 13 19 19 H 1.48502 * 109.47164 * 210.00231 * 17 15 13 20 20 H 1.48503 * 109.47033 * 329.99911 * 17 15 13 21 21 C 1.52996 * 117.50106 * 279.45533 * 12 11 10 22 22 C 1.52998 * 117.50031 * 210.79110 * 12 11 10 23 23 C 1.38675 * 119.99429 * 0.02562 * 9 8 7 24 24 H 1.09002 * 109.47263 * 60.00172 * 1 2 3 25 25 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47282 * 300.00082 * 1 2 3 27 27 H 1.08006 * 119.99874 * 0.02562 * 6 5 3 28 28 H 1.08004 * 119.88528 * 179.76573 * 7 6 5 29 29 H 1.07999 * 119.88483 * 180.27836 * 8 7 6 30 30 H 0.96999 * 120.00443 * 180.02562 * 10 9 8 31 31 H 1.08999 * 109.46692 * 300.72912 * 11 10 9 32 32 H 1.09001 * 109.46769 * 60.72013 * 11 10 9 33 33 H 0.96998 * 120.00001 * 185.05962 * 16 15 13 34 34 H 1.09008 * 117.49686 * 0.02562 * 21 12 11 35 35 H 1.08997 * 117.50168 * 145.01934 * 21 12 11 36 36 H 1.08994 * 117.50169 * 214.98407 * 22 12 11 37 37 H 1.09004 * 117.49407 * 359.97438 * 22 12 11 38 38 H 1.07999 * 120.11249 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3020 0.1079 -0.0039 7 6 5.6796 0.1828 0.0022 8 6 6.3098 1.4134 0.0023 9 6 5.5600 2.5836 0.0014 10 7 6.2017 3.8245 0.0010 11 6 7.6652 3.8924 0.0009 12 6 8.1078 5.3569 0.0186 13 6 7.7492 6.1293 1.2619 14 1 6.8438 6.7174 1.2898 15 6 8.5769 6.0853 2.3636 16 7 9.6086 5.2698 2.3788 17 14 8.2330 7.1838 3.8348 18 1 7.3414 6.4726 4.7859 19 1 9.5115 7.5197 4.5115 20 1 7.5726 8.4325 3.3765 21 6 8.0980 6.1140 -1.3109 22 6 9.4278 5.7043 -0.6728 23 6 4.1747 2.5194 0.0010 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8136 -0.8555 -0.0082 28 1 6.2678 -0.7230 0.0026 29 1 7.3885 1.4655 0.0026 30 1 5.6784 4.6413 0.0007 31 1 8.0524 3.3850 0.8845 32 1 8.0513 3.4069 -0.8953 33 1 10.1478 5.1848 3.1807 34 1 7.7757 5.5688 -2.1982 35 1 7.8325 7.1708 -1.2863 36 1 10.0365 6.4918 -0.2286 37 1 9.9810 4.8894 -1.1398 38 1 3.5902 3.4275 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594700449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:39 Heat of formation + Delta-G solvation = -36.154524 kcal Electronic energy + Delta-G solvation = -20393.540481 eV Core-core repulsion = 17201.665840 eV Total energy + Delta-G solvation = -3191.874641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45303 -38.87143 -36.98548 -36.36606 -34.27506 -32.02504 -31.05396 -29.41015 -27.67596 -25.88214 -25.12431 -23.61360 -21.89626 -21.18071 -20.44510 -19.23730 -17.86009 -17.08424 -16.38100 -16.34272 -15.72176 -15.42901 -14.86588 -14.69388 -13.98772 -13.72780 -13.58836 -13.39616 -13.33073 -12.97880 -12.69166 -12.22750 -11.89490 -11.62629 -11.47012 -11.06705 -11.02303 -10.95498 -10.86714 -10.55717 -10.42257 -10.30879 -9.73486 -9.63748 -8.91710 -8.79278 -8.53802 -8.27469 -6.88815 -6.13244 -4.20787 0.95256 1.84530 2.67514 2.75429 3.24041 3.31601 3.34555 4.06693 4.15381 4.33153 4.78806 4.97474 5.05164 5.11579 5.15611 5.26259 5.35308 5.42956 5.53382 5.73311 5.87186 5.93362 6.10012 6.25363 6.28575 6.33524 6.45192 6.54523 6.61517 6.64477 6.70188 6.74695 7.00542 7.06488 7.33346 7.40239 7.77448 7.78581 7.95062 8.29063 8.39607 8.79964 9.46315 10.94655 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.004023 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.068085 B = 6957.698403 C = 7394.635926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.511 3.489 4 O -0.509 6.509 5 C -0.083 4.083 6 C -0.143 4.143 7 C -0.083 4.083 8 C -0.169 4.169 9 C 0.224 3.776 10 N -0.717 5.717 11 C 0.164 3.836 12 C 0.029 3.971 13 C -0.499 4.499 14 H 0.059 0.941 15 C 0.075 3.925 16 N -0.877 5.877 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.210 4.210 22 C -0.148 4.148 23 C -0.144 4.144 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.403 0.597 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 -10.882 -5.138 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.084 4.084 6 C -0.164 4.164 7 C -0.101 4.101 8 C -0.193 4.193 9 C 0.115 3.885 10 N -0.340 5.340 11 C 0.041 3.959 12 C 0.029 3.971 13 C -0.536 4.536 14 H 0.077 0.923 15 C -0.129 4.129 16 N -0.513 5.513 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.248 4.248 22 C -0.186 4.186 23 C -0.167 4.167 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.718 -10.555 -5.040 15.207 hybrid contribution -0.445 0.934 0.938 1.397 sum -10.164 -9.621 -4.102 14.584 Atomic orbital electron populations 1.23243 0.76474 1.03496 1.02544 1.86560 1.23146 1.32965 1.84501 1.21436 0.89480 0.81137 0.72335 1.90816 1.66955 1.36086 1.45964 1.18641 0.87843 0.94640 1.07325 1.20978 0.93790 0.97039 1.04578 1.20806 0.93980 0.97124 0.98236 1.20967 1.00278 0.91178 1.06874 1.17789 0.90688 0.87275 0.92725 1.44958 1.07219 1.03853 1.77973 1.21043 0.77765 0.98319 0.98804 1.18969 0.97161 0.90328 0.90669 1.20345 1.07510 1.28987 0.96783 0.92253 1.24957 0.94426 0.95183 0.98347 1.69961 1.17360 1.35862 1.28141 0.86631 0.77679 0.81285 0.82709 1.20608 1.21128 1.19802 1.23024 1.04019 1.00276 0.97432 1.22497 0.90581 1.02082 1.03459 1.20586 0.92668 0.96957 1.06528 0.91966 0.88162 0.91928 0.85542 0.85769 0.85435 0.76230 0.91344 0.95143 0.92870 0.91593 0.90369 0.89827 0.91710 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.45 9.81 -40.51 -0.40 -4.85 16 3 C 0.51 7.74 7.90 34.61 0.27 8.01 16 4 O -0.51 -8.85 16.13 -19.24 -0.31 -9.16 16 5 C -0.08 -1.27 5.87 -105.01 -0.62 -1.88 16 6 C -0.14 -1.92 9.61 -39.15 -0.38 -2.30 16 7 C -0.08 -1.10 10.02 -39.68 -0.40 -1.50 16 8 C -0.17 -2.66 9.31 -39.30 -0.37 -3.03 16 9 C 0.22 3.85 6.65 -83.83 -0.56 3.29 16 10 N -0.72 -13.44 5.65 -58.67 -0.33 -13.77 16 11 C 0.16 3.39 4.74 -4.04 -0.02 3.37 16 12 C 0.03 0.67 1.37 -155.66 -0.21 0.45 16 13 C -0.50 -12.74 8.66 -34.44 -0.30 -13.04 16 14 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 15 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 16 N -0.88 -23.65 12.92 55.43 0.72 -22.93 16 17 Si 0.89 20.57 29.55 -169.99 -5.02 15.54 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.21 -4.29 9.96 -26.69 -0.27 -4.56 16 22 C -0.15 -3.26 9.42 -26.69 -0.25 -3.51 16 23 C -0.14 -2.38 9.44 -38.95 -0.37 -2.75 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 1.44 7.61 -52.48 -0.40 1.04 16 28 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.13 1.98 6.71 -52.49 -0.35 1.63 16 30 H 0.40 7.55 8.41 -40.82 -0.34 7.21 16 31 H 0.07 1.58 7.91 -51.93 -0.41 1.17 16 32 H 0.03 0.59 7.93 -51.93 -0.41 0.18 16 33 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 34 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.13 2.17 7.65 -52.49 -0.40 1.77 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -28.16 331.67 -8.08 -36.24 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.25 Total: 8.11 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.48 Total: -14.18 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.38 Total: -36.70 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.71 Total: -14.01 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.16 -8.08 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594700449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.085 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds