Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34708 * 116.99996 * 2 1 4 4 O 1.21469 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.47741 * 119.99975 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.11798 * 0.23721 * 5 3 2 7 7 C 1.37968 * 120.00189 * 180.26771 * 6 5 3 8 8 C 1.38250 * 120.23170 * 359.49787 * 7 6 5 9 9 C 1.38986 * 120.23366 * 0.24661 * 8 7 6 10 10 N 1.39706 * 120.00487 * 180.02562 * 9 8 7 11 11 C 1.46502 * 120.00224 * 0.02562 * 10 9 8 12 12 C 1.52999 * 109.47400 * 180.72179 * 11 10 9 13 13 C 1.50700 * 115.54849 * 65.12596 * 12 11 10 14 14 H 1.08001 * 119.99748 * 265.35627 * 13 12 11 15 15 C 1.37874 * 120.00282 * 85.35346 * 13 12 11 16 16 N 1.31519 * 119.99962 * 353.37591 * 15 13 12 17 17 Si 1.86800 * 120.00267 * 173.37967 * 15 13 12 18 18 H 1.48499 * 109.47209 * 90.00074 * 17 15 13 19 19 H 1.48502 * 109.47164 * 210.00231 * 17 15 13 20 20 H 1.48503 * 109.47033 * 329.99911 * 17 15 13 21 21 C 1.52996 * 117.50106 * 279.45533 * 12 11 10 22 22 C 1.52998 * 117.50031 * 210.79110 * 12 11 10 23 23 C 1.38675 * 119.99429 * 0.02562 * 9 8 7 24 24 H 1.09002 * 109.47263 * 60.00172 * 1 2 3 25 25 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47282 * 300.00082 * 1 2 3 27 27 H 1.08006 * 119.99874 * 0.02562 * 6 5 3 28 28 H 1.08004 * 119.88528 * 179.76573 * 7 6 5 29 29 H 1.07999 * 119.88483 * 180.27836 * 8 7 6 30 30 H 0.96999 * 120.00443 * 180.02562 * 10 9 8 31 31 H 1.08999 * 109.46692 * 300.72912 * 11 10 9 32 32 H 1.09001 * 109.46769 * 60.72013 * 11 10 9 33 33 H 0.96998 * 120.00001 * 185.05962 * 16 15 13 34 34 H 1.09008 * 117.49686 * 0.02562 * 21 12 11 35 35 H 1.08997 * 117.50168 * 145.01934 * 21 12 11 36 36 H 1.08994 * 117.50169 * 214.98407 * 22 12 11 37 37 H 1.09004 * 117.49407 * 359.97438 * 22 12 11 38 38 H 1.07999 * 120.11249 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3020 0.1079 -0.0039 7 6 5.6796 0.1828 0.0022 8 6 6.3098 1.4134 0.0023 9 6 5.5600 2.5836 0.0014 10 7 6.2017 3.8245 0.0010 11 6 7.6652 3.8924 0.0009 12 6 8.1078 5.3569 0.0186 13 6 7.7492 6.1293 1.2619 14 1 6.8438 6.7174 1.2898 15 6 8.5769 6.0853 2.3636 16 7 9.6086 5.2698 2.3788 17 14 8.2330 7.1838 3.8348 18 1 7.3414 6.4726 4.7859 19 1 9.5115 7.5197 4.5115 20 1 7.5726 8.4325 3.3765 21 6 8.0980 6.1140 -1.3109 22 6 9.4278 5.7043 -0.6728 23 6 4.1747 2.5194 0.0010 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.8136 -0.8555 -0.0082 28 1 6.2678 -0.7230 0.0026 29 1 7.3885 1.4655 0.0026 30 1 5.6784 4.6413 0.0007 31 1 8.0524 3.3850 0.8845 32 1 8.0513 3.4069 -0.8953 33 1 10.1478 5.1848 3.1807 34 1 7.7757 5.5688 -2.1982 35 1 7.8325 7.1708 -1.2863 36 1 10.0365 6.4918 -0.2286 37 1 9.9810 4.8894 -1.1398 38 1 3.5902 3.4275 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594700449.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -50.590261 kcal Electronic energy + Delta-G solvation = -20394.166462 eV Core-core repulsion = 17201.665840 eV Total energy + Delta-G solvation = -3192.500621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57969 -40.11785 -38.60504 -37.48109 -35.67833 -33.99120 -32.22352 -30.71781 -28.54621 -27.69807 -26.69547 -24.81812 -23.17153 -22.79909 -21.68409 -20.95459 -19.05818 -18.22955 -18.11101 -17.37295 -16.90905 -16.86827 -16.55236 -16.20152 -15.64958 -15.02245 -14.73777 -14.55578 -14.47689 -14.35140 -14.26236 -13.48310 -13.29789 -13.03675 -12.95492 -12.86915 -12.59841 -12.39528 -12.20150 -12.04719 -11.81179 -11.58657 -11.42642 -11.14627 -10.69907 -10.45177 -10.03750 -9.97501 -8.25220 -8.11591 -6.23083 -0.24362 0.67333 1.38398 1.41840 1.49237 1.57229 1.66431 2.40102 2.66601 2.95595 3.16390 3.54576 3.73746 4.00517 4.24126 4.24847 4.31147 4.35035 4.40456 4.54294 4.56538 4.63801 4.65959 4.73729 4.78420 4.93428 4.99183 5.07165 5.21901 5.27008 5.35632 5.43464 5.57133 5.62380 5.62602 5.76619 5.89946 6.35769 6.55426 6.67160 6.81093 6.96774 7.45334 8.94950 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021400 B = 0.004023 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.068085 B = 6957.698403 C = 7394.635926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.540 6.540 5 C -0.095 4.095 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.177 4.177 9 C 0.203 3.797 10 N -0.726 5.726 11 C 0.184 3.816 12 C 0.006 3.994 13 C -0.507 4.507 14 H 0.050 0.950 15 C 0.032 3.968 16 N -0.901 5.901 17 Si 0.942 3.058 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.186 4.186 22 C -0.153 4.153 23 C -0.155 4.155 24 H 0.062 0.938 25 H 0.139 0.861 26 H 0.060 0.940 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.126 0.874 30 H 0.399 0.601 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.260 0.740 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -12.887 -5.670 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.360 3.640 4 O -0.432 6.432 5 C -0.097 4.097 6 C -0.146 4.146 7 C -0.092 4.092 8 C -0.200 4.200 9 C 0.097 3.903 10 N -0.351 5.351 11 C 0.060 3.940 12 C 0.006 3.994 13 C -0.545 4.545 14 H 0.068 0.932 15 C -0.169 4.169 16 N -0.539 5.539 17 Si 0.768 3.232 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.223 4.223 22 C -0.192 4.192 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.157 0.843 26 H 0.079 0.921 27 H 0.174 0.826 28 H 0.179 0.821 29 H 0.144 0.856 30 H 0.233 0.767 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.680 -12.597 -5.579 17.432 hybrid contribution -0.265 1.439 1.078 1.817 sum -10.946 -11.159 -4.501 16.266 Atomic orbital electron populations 1.23614 0.74326 1.06039 1.02535 1.86537 1.25178 1.31233 1.83762 1.21432 0.89435 0.81487 0.71664 1.90802 1.67559 1.37257 1.47546 1.18815 0.88415 0.94848 1.07595 1.21343 0.93813 0.97480 1.01945 1.21195 0.94233 0.97442 0.96355 1.21168 1.00341 0.91709 1.06769 1.17949 0.91046 0.87138 0.94156 1.44786 1.06255 1.04443 1.79634 1.20631 0.78909 0.96520 0.97934 1.19049 0.98032 0.91539 0.90815 1.20604 1.06973 1.28837 0.98093 0.93166 1.25546 0.94571 0.96253 1.00535 1.70046 1.18152 1.37098 1.28581 0.85812 0.77338 0.79854 0.80165 1.20741 1.20982 1.19597 1.22992 1.02101 1.00147 0.97041 1.22432 0.90755 1.02019 1.03948 1.20551 0.92461 0.97417 1.07460 0.91915 0.84324 0.92115 0.82625 0.82092 0.85595 0.76690 0.94426 0.93774 0.93076 0.89231 0.90558 0.92147 0.90268 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.95 9.81 -56.17 -0.55 -8.50 16 3 C 0.51 14.95 7.90 70.33 0.56 15.51 16 4 O -0.54 -18.70 16.13 19.94 0.32 -18.38 16 5 C -0.09 -2.78 5.87 -20.12 -0.12 -2.90 16 6 C -0.13 -2.98 9.61 22.55 0.22 -2.76 16 7 C -0.07 -1.74 10.02 22.21 0.22 -1.52 16 8 C -0.18 -5.32 9.31 22.45 0.21 -5.11 16 9 C 0.20 6.98 6.65 38.17 0.25 7.23 16 10 N -0.73 -27.60 5.65 -339.52 -1.92 -29.52 16 11 C 0.18 7.66 4.74 86.38 0.41 8.07 16 12 C 0.01 0.29 1.37 -52.93 -0.07 0.22 16 13 C -0.51 -26.32 8.66 25.60 0.22 -26.10 16 14 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 15 C 0.03 1.70 5.39 84.65 0.46 2.15 16 16 N -0.90 -49.41 12.92 21.45 0.28 -49.14 16 17 Si 0.94 42.78 29.55 68.60 2.03 44.81 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.19 -7.42 9.96 30.62 0.30 -7.12 16 22 C -0.15 -6.74 9.42 30.62 0.29 -6.46 16 23 C -0.16 -5.16 9.44 22.68 0.21 -4.94 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 2.82 7.61 -2.91 -0.02 2.79 16 28 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.13 3.81 6.71 -2.91 -0.02 3.79 16 30 H 0.40 15.38 8.41 -92.71 -0.78 14.60 16 31 H 0.04 1.77 7.91 -2.39 -0.02 1.76 16 32 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 33 H 0.26 13.76 8.32 -92.71 -0.77 12.99 16 34 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 35 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 38 H 0.12 4.15 7.65 -2.91 -0.02 4.12 16 Total: -1.00 -60.98 331.67 4.80 -56.17 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.29 Total: 26.66 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.36 Total: -22.10 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.64 Total: -78.65 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.23 Total: -26.89 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -60.98 4.80 -56.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594700449.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.583 kcal (2) G-P(sol) polarization free energy of solvation -60.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds