Wall clock time and date at job start Mon Mar 30 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34768 * 117.00282 * 2 1 4 4 O 1.21524 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.47287 * 120.00461 * 180.02562 * 3 2 1 6 6 C 1.39806 * 120.21253 * 5.68463 * 5 3 2 7 7 C 1.37717 * 119.91956 * 180.02562 * 6 5 3 8 8 C 1.38627 * 120.36385 * 359.97438 * 7 6 5 9 9 C 1.37947 * 120.43544 * 0.02562 * 8 7 6 10 10 C 1.38963 * 120.06831 * 359.97438 * 9 8 7 11 11 N 1.38838 * 120.17535 * 180.27568 * 10 9 8 12 12 C 1.46496 * 120.00372 * 353.91294 * 11 10 9 13 13 C 1.52998 * 109.47359 * 185.02911 * 12 11 10 14 14 C 1.50698 * 115.55034 * 275.59151 * 13 12 11 15 15 H 1.07997 * 120.00013 * 114.75799 * 14 13 12 16 16 C 1.37878 * 119.99759 * 294.75443 * 14 13 12 17 17 N 1.31517 * 119.99994 * 352.11805 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 172.11365 * 16 14 13 19 19 H 1.48501 * 109.47195 * 60.00245 * 18 16 14 20 20 H 1.48495 * 109.47336 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46850 * 300.00313 * 18 16 14 22 22 C 1.52993 * 117.49858 * 129.87845 * 13 12 11 23 23 C 1.53002 * 60.00273 * 252.51448 * 22 13 12 24 24 H 1.09002 * 109.46919 * 300.00683 * 1 2 3 25 25 H 1.09002 * 109.46782 * 60.00080 * 1 2 3 26 26 H 1.08997 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.03860 * 0.04764 * 6 5 3 28 28 H 1.08001 * 119.81524 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.78248 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.96132 * 180.02562 * 9 8 7 31 31 H 0.97000 * 119.99222 * 173.91491 * 11 10 9 32 32 H 1.09001 * 109.47251 * 305.03089 * 12 11 10 33 33 H 1.08997 * 109.46936 * 65.02829 * 12 11 10 34 34 H 0.97003 * 119.99491 * 185.00001 * 17 16 14 35 35 H 1.09002 * 117.50387 * 0.02562 * 22 13 12 36 36 H 1.09005 * 117.50179 * 145.02181 * 22 13 12 37 37 H 1.08997 * 117.49424 * 252.51568 * 23 22 13 38 38 H 1.08996 * 117.51714 * 107.48566 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.3002 0.1142 -0.1208 7 6 5.6751 0.1933 -0.1201 8 6 6.3063 1.4218 -0.0013 9 6 5.5656 2.5793 0.1182 10 6 4.1772 2.5205 0.1196 11 7 3.4294 3.6847 0.2340 12 6 4.0985 4.9631 0.4872 13 6 3.0482 6.0564 0.6931 14 6 2.5143 6.6903 -0.5655 15 1 1.4762 6.5642 -0.8352 16 6 3.3513 7.4312 -1.3727 17 7 4.5708 7.7154 -0.9706 18 14 2.7532 8.0311 -3.0376 19 1 1.5674 8.9055 -2.8519 20 1 3.8351 8.7986 -3.7051 21 1 2.3818 6.8655 -3.8795 22 6 3.1893 6.9478 1.9286 23 6 2.0811 5.8946 1.8677 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.8138 -0.8456 -0.2144 28 1 6.2648 -0.7068 -0.2126 29 1 7.3851 1.4728 -0.0014 30 1 6.0652 3.5324 0.2099 31 1 2.4640 3.6515 0.1462 32 1 4.7158 4.8792 1.3816 33 1 4.7272 5.2193 -0.3655 34 1 5.1345 8.2967 -1.5048 35 1 4.0306 6.7556 2.5945 36 1 2.8961 7.9931 1.8312 37 1 1.0589 6.2471 1.7301 38 1 2.1928 5.0092 2.4934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594702210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:42 Heat of formation + Delta-G solvation = -30.852572 kcal Electronic energy + Delta-G solvation = -21219.361186 eV Core-core repulsion = 18027.716455 eV Total energy + Delta-G solvation = -3191.644731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.42039 -38.68449 -36.98618 -36.22774 -34.10761 -32.06072 -31.22969 -29.07479 -27.63711 -25.93429 -24.93443 -23.68651 -21.44285 -21.14630 -20.70085 -19.10504 -17.69092 -16.93167 -16.53174 -16.15542 -16.13398 -15.02913 -14.69797 -14.51286 -13.98783 -13.86461 -13.61038 -13.29152 -13.09068 -12.75030 -12.58561 -12.11548 -11.81597 -11.69595 -11.55638 -11.04669 -10.95120 -10.90083 -10.68624 -10.54186 -10.28203 -9.99681 -9.71652 -9.51200 -8.92539 -8.76420 -8.59234 -8.22208 -6.92149 -6.10295 -4.15047 1.11652 1.96165 2.85035 2.92002 3.28114 3.32751 3.36889 4.10145 4.18337 4.36154 4.98488 5.11893 5.14658 5.15981 5.23416 5.27868 5.38188 5.50638 5.66013 5.73199 5.87020 6.00753 6.17947 6.30177 6.36454 6.47147 6.48441 6.59866 6.64644 6.67906 6.78270 6.82691 7.01702 7.15486 7.35511 7.43174 7.83374 7.93142 7.99922 8.34946 8.61656 8.85359 9.49273 10.97623 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.005793 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.014628 B = 4832.154339 C = 5333.225689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.516 3.484 4 O -0.515 6.515 5 C -0.241 4.241 6 C -0.011 4.011 7 C -0.219 4.219 8 C -0.032 4.032 9 C -0.216 4.216 10 C 0.293 3.707 11 N -0.694 5.694 12 C 0.153 3.847 13 C 0.036 3.964 14 C -0.495 4.495 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.879 5.879 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.165 4.165 23 C -0.204 4.204 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.420 0.580 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 -14.498 2.531 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.364 3.636 4 O -0.405 6.405 5 C -0.248 4.248 6 C -0.030 4.030 7 C -0.239 4.239 8 C -0.052 4.052 9 C -0.239 4.239 10 C 0.175 3.825 11 N -0.323 5.323 12 C 0.029 3.971 13 C 0.035 3.965 14 C -0.532 4.532 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.516 5.516 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.203 4.203 23 C -0.242 4.242 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.081 -13.891 2.476 14.110 hybrid contribution -0.765 0.534 -0.905 1.300 sum -0.846 -13.357 1.570 13.476 Atomic orbital electron populations 1.23207 0.76649 1.03180 1.02664 1.86533 1.23034 1.33002 1.85013 1.21162 0.88954 0.81090 0.72367 1.90577 1.66558 1.35274 1.48077 1.18331 0.88289 0.93777 1.24405 1.21038 0.93701 0.96439 0.91800 1.20670 0.94085 0.97609 1.11571 1.21078 0.99441 0.92007 0.92635 1.20747 0.91426 0.99698 1.11983 1.17955 0.91331 0.85761 0.87427 1.46156 1.11904 1.04374 1.69901 1.21222 0.95292 0.80946 0.99601 1.18967 0.94179 0.94355 0.88996 1.20429 0.95830 1.32362 1.04600 0.92171 1.24960 0.94727 0.95621 0.97822 1.69948 1.07955 1.35283 1.38405 0.86670 0.78375 0.78850 0.84248 1.20213 1.21168 1.20107 1.22726 0.98466 0.96128 1.02975 1.22850 0.95650 1.00387 1.05266 0.91978 0.91929 0.88427 0.85482 0.86330 0.86085 0.85023 0.73290 0.94382 0.90164 0.92768 0.91693 0.89932 0.90378 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.57 101.05 1.07 1.48 16 2 O -0.36 -5.17 9.83 -40.68 -0.40 -5.57 16 3 C 0.52 9.02 7.87 34.41 0.27 9.29 16 4 O -0.52 -10.39 13.44 -19.28 -0.26 -10.65 16 5 C -0.24 -4.12 5.89 -104.82 -0.62 -4.73 16 6 C -0.01 -0.15 9.61 -39.19 -0.38 -0.53 16 7 C -0.22 -2.79 10.02 -39.63 -0.40 -3.18 16 8 C -0.03 -0.44 10.03 -39.54 -0.40 -0.83 16 9 C -0.22 -3.60 9.28 -39.42 -0.37 -3.97 16 10 C 0.29 5.50 6.65 -83.61 -0.56 4.95 16 11 N -0.69 -14.79 5.49 -58.44 -0.32 -15.11 16 12 C 0.15 3.47 4.74 -4.05 -0.02 3.45 16 13 C 0.04 0.88 1.32 -155.66 -0.20 0.67 16 14 C -0.49 -13.47 8.82 -34.44 -0.30 -13.77 16 15 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 16 C 0.07 1.95 5.22 -17.82 -0.09 1.86 16 17 N -0.88 -24.24 12.60 55.43 0.70 -23.54 16 18 Si 0.89 21.20 29.55 -169.99 -5.02 16.18 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.16 -3.79 9.88 -26.73 -0.26 -4.05 16 23 C -0.20 -4.53 9.78 -26.73 -0.26 -4.79 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.13 1.49 7.62 -52.49 -0.40 1.09 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.13 2.22 6.75 -52.49 -0.35 1.86 16 31 H 0.42 9.48 4.93 -40.94 -0.20 9.28 16 32 H 0.04 0.81 7.70 -51.93 -0.40 0.41 16 33 H 0.08 2.00 7.08 -51.93 -0.37 1.63 16 34 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 35 H 0.06 1.39 8.06 -51.93 -0.42 0.97 16 36 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -29.19 325.15 -7.99 -37.18 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.07 Total: 10.78 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.52 Total: -14.18 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.38 Total: -38.65 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.66 Total: -16.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.19 -7.99 -37.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.329 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds