Wall clock time and date at job start Mon Mar 30 2020 01:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34768 * 117.00282 * 2 1 4 4 O 1.21524 * 119.99785 * 359.97438 * 3 2 1 5 5 C 1.47287 * 120.00461 * 180.02562 * 3 2 1 6 6 C 1.39806 * 120.21253 * 5.68463 * 5 3 2 7 7 C 1.37717 * 119.91956 * 180.02562 * 6 5 3 8 8 C 1.38627 * 120.36385 * 359.97438 * 7 6 5 9 9 C 1.37947 * 120.43544 * 0.02562 * 8 7 6 10 10 C 1.38963 * 120.06831 * 359.97438 * 9 8 7 11 11 N 1.38838 * 120.17535 * 180.27568 * 10 9 8 12 12 C 1.46496 * 120.00372 * 353.91294 * 11 10 9 13 13 C 1.52998 * 109.47359 * 185.02911 * 12 11 10 14 14 C 1.50698 * 115.55034 * 275.59151 * 13 12 11 15 15 H 1.07997 * 120.00013 * 114.75799 * 14 13 12 16 16 C 1.37878 * 119.99759 * 294.75443 * 14 13 12 17 17 N 1.31517 * 119.99994 * 352.11805 * 16 14 13 18 18 Si 1.86799 * 120.00017 * 172.11365 * 16 14 13 19 19 H 1.48501 * 109.47195 * 60.00245 * 18 16 14 20 20 H 1.48495 * 109.47336 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46850 * 300.00313 * 18 16 14 22 22 C 1.52993 * 117.49858 * 129.87845 * 13 12 11 23 23 C 1.53002 * 60.00273 * 252.51448 * 22 13 12 24 24 H 1.09002 * 109.46919 * 300.00683 * 1 2 3 25 25 H 1.09002 * 109.46782 * 60.00080 * 1 2 3 26 26 H 1.08997 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.03860 * 0.04764 * 6 5 3 28 28 H 1.08001 * 119.81524 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.78248 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.96132 * 180.02562 * 9 8 7 31 31 H 0.97000 * 119.99222 * 173.91491 * 11 10 9 32 32 H 1.09001 * 109.47251 * 305.03089 * 12 11 10 33 33 H 1.08997 * 109.46936 * 65.02829 * 12 11 10 34 34 H 0.97003 * 119.99491 * 185.00001 * 17 16 14 35 35 H 1.09002 * 117.50387 * 0.02562 * 22 13 12 36 36 H 1.09005 * 117.50179 * 145.02181 * 22 13 12 37 37 H 1.08997 * 117.49424 * 252.51568 * 23 22 13 38 38 H 1.08996 * 117.51714 * 107.48566 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.3002 0.1142 -0.1208 7 6 5.6751 0.1933 -0.1201 8 6 6.3063 1.4218 -0.0013 9 6 5.5656 2.5793 0.1182 10 6 4.1772 2.5205 0.1196 11 7 3.4294 3.6847 0.2340 12 6 4.0985 4.9631 0.4872 13 6 3.0482 6.0564 0.6931 14 6 2.5143 6.6903 -0.5655 15 1 1.4762 6.5642 -0.8352 16 6 3.3513 7.4312 -1.3727 17 7 4.5708 7.7154 -0.9706 18 14 2.7532 8.0311 -3.0376 19 1 1.5674 8.9055 -2.8519 20 1 3.8351 8.7986 -3.7051 21 1 2.3818 6.8655 -3.8795 22 6 3.1893 6.9478 1.9286 23 6 2.0811 5.8946 1.8677 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.8138 -0.8456 -0.2144 28 1 6.2648 -0.7068 -0.2126 29 1 7.3851 1.4728 -0.0014 30 1 6.0652 3.5324 0.2099 31 1 2.4640 3.6515 0.1462 32 1 4.7158 4.8792 1.3816 33 1 4.7272 5.2193 -0.3655 34 1 5.1345 8.2967 -1.5048 35 1 4.0306 6.7556 2.5945 36 1 2.8961 7.9931 1.8312 37 1 1.0589 6.2471 1.7301 38 1 2.1928 5.0092 2.4934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594702210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:41 Heat of formation + Delta-G solvation = -46.504647 kcal Electronic energy + Delta-G solvation = -21220.039910 eV Core-core repulsion = 18027.716455 eV Total energy + Delta-G solvation = -3192.323456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70131 -39.97178 -38.68153 -37.51532 -35.57533 -34.11779 -32.43145 -30.41790 -28.67641 -27.81644 -26.64127 -24.88352 -23.10074 -22.59883 -22.01315 -20.94838 -18.92414 -18.39931 -18.02635 -17.60883 -17.34934 -16.70016 -16.52414 -15.79732 -15.60414 -15.22065 -14.96365 -14.64463 -14.34017 -14.19755 -14.16106 -13.53017 -13.26779 -13.13751 -12.97999 -12.86203 -12.76178 -12.41265 -12.18853 -12.04266 -11.81169 -11.46222 -11.32522 -11.17727 -10.76696 -10.55224 -10.13762 -9.95772 -8.33872 -8.16328 -6.26789 -0.10578 0.75357 1.36177 1.38912 1.45579 1.58699 1.78057 2.37177 2.59640 2.98166 3.08258 3.51214 3.83298 4.00884 4.14726 4.22676 4.33223 4.33383 4.45600 4.52658 4.55872 4.56786 4.64459 4.71914 4.74948 4.87312 4.99572 5.08567 5.16330 5.28333 5.30385 5.50380 5.50845 5.53565 5.67401 5.75337 6.01499 6.32898 6.46953 6.68303 6.74816 7.07988 7.39132 8.90459 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.005793 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.014628 B = 4832.154339 C = 5333.225689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.513 3.487 4 O -0.550 6.550 5 C -0.254 4.254 6 C -0.008 4.008 7 C -0.200 4.200 8 C -0.022 4.022 9 C -0.236 4.236 10 C 0.262 3.738 11 N -0.715 5.715 12 C 0.176 3.824 13 C 0.009 3.991 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.899 5.899 18 Si 0.946 3.054 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.280 1.280 22 C -0.162 4.162 23 C -0.185 4.185 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.410 0.590 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -17.177 2.382 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.363 3.637 4 O -0.443 6.443 5 C -0.261 4.261 6 C -0.026 4.026 7 C -0.220 4.220 8 C -0.041 4.041 9 C -0.259 4.259 10 C 0.148 3.852 11 N -0.346 5.346 12 C 0.052 3.948 13 C 0.009 3.991 14 C -0.552 4.552 15 H 0.062 0.938 16 C -0.169 4.169 17 N -0.536 5.536 18 Si 0.771 3.229 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.205 1.205 22 C -0.200 4.200 23 C -0.223 4.223 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.174 0.826 30 H 0.137 0.863 31 H 0.256 0.744 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.783 -16.626 2.330 16.807 hybrid contribution -1.018 1.164 -0.857 1.768 sum -0.235 -15.462 1.473 15.534 Atomic orbital electron populations 1.23552 0.74735 1.05830 1.02255 1.86515 1.24847 1.31177 1.84301 1.21389 0.89340 0.81382 0.71577 1.90558 1.67344 1.36601 1.49804 1.18591 0.88545 0.94276 1.24724 1.21413 0.94343 0.96314 0.90570 1.21189 0.93817 0.98679 1.08337 1.21508 1.01101 0.91139 0.90315 1.20851 0.90909 1.00688 1.13441 1.18326 0.92195 0.85629 0.89027 1.45952 1.11390 1.04550 1.72754 1.20735 0.94262 0.81528 0.98312 1.19073 0.95813 0.95514 0.88748 1.20624 0.95334 1.32964 1.06247 0.93761 1.25561 0.94954 0.95850 1.00501 1.70027 1.08566 1.35650 1.39341 0.85813 0.78206 0.78216 0.80620 1.19718 1.20230 1.20546 1.22680 0.99345 0.95403 1.02562 1.22788 0.95102 1.00373 1.03995 0.92353 0.92505 0.84176 0.82744 0.82119 0.82641 0.86282 0.74366 0.93884 0.93369 0.92698 0.90120 0.91289 0.90595 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.57 113.37 1.20 1.80 16 2 O -0.35 -9.59 9.83 -56.79 -0.56 -10.15 16 3 C 0.51 17.87 7.87 70.20 0.55 18.43 16 4 O -0.55 -22.89 13.44 19.76 0.27 -22.62 16 5 C -0.25 -8.51 5.89 -19.99 -0.12 -8.63 16 6 C -0.01 -0.20 9.61 22.53 0.22 0.02 16 7 C -0.20 -4.20 10.02 22.24 0.22 -3.98 16 8 C -0.02 -0.52 10.03 22.29 0.22 -0.30 16 9 C -0.24 -7.79 9.28 22.37 0.21 -7.59 16 10 C 0.26 9.96 6.65 38.73 0.26 10.22 16 11 N -0.71 -31.70 5.49 -338.81 -1.86 -33.56 16 12 C 0.18 8.32 4.74 86.38 0.41 8.73 16 13 C 0.01 0.47 1.32 -52.93 -0.07 0.40 16 14 C -0.51 -29.00 8.82 25.60 0.23 -28.77 16 15 H 0.04 2.56 7.83 -2.91 -0.02 2.53 16 16 C 0.03 1.81 5.22 84.65 0.44 2.26 16 17 N -0.90 -50.67 12.60 21.45 0.27 -50.40 16 18 Si 0.95 44.34 29.55 68.60 2.03 46.37 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 C -0.16 -7.58 9.88 30.59 0.30 -7.27 16 23 C -0.19 -8.37 9.78 30.60 0.30 -8.07 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.15 2.94 7.62 -2.91 -0.02 2.92 16 28 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.12 4.14 6.75 -2.91 -0.02 4.12 16 31 H 0.41 19.45 4.93 -94.57 -0.47 18.99 16 32 H 0.04 1.92 7.70 -2.39 -0.02 1.90 16 33 H 0.05 2.54 7.08 -2.39 -0.02 2.52 16 34 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 35 H 0.08 3.47 8.06 -2.39 -0.02 3.45 16 36 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.08 3.39 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -65.49 325.15 5.12 -60.38 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.60 Total: 32.75 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.37 Total: -22.75 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.59 Total: -83.96 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.29 Total: -32.77 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.49 5.12 -60.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.871 kcal (2) G-P(sol) polarization free energy of solvation -65.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds