Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42095 * 108.57976 * 2 1 4 4 O 1.42098 * 108.57808 * 228.97614 * 2 1 3 5 5 C 1.81402 * 101.92135 * 114.48869 * 2 1 3 6 6 C 1.53005 * 109.47158 * 186.37974 * 5 2 1 7 7 H 1.08995 * 109.46010 * 180.70757 * 6 5 2 8 8 C 1.53034 * 109.45906 * 300.67522 * 6 5 2 9 9 C 1.53127 * 109.27333 * 179.19596 * 8 6 5 10 10 C 1.53112 * 109.16103 * 302.34229 * 9 8 6 11 11 C 1.53035 * 109.27836 * 57.65538 * 10 9 8 12 12 N 1.46845 * 109.46034 * 60.72557 * 6 5 2 13 13 C 1.46900 * 111.00221 * 54.14715 * 12 6 5 14 14 C 1.52995 * 109.47586 * 177.16997 * 13 12 6 15 15 C 1.50701 * 109.47663 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99481 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00413 * 179.97438 * 15 14 13 18 18 N 1.31525 * 119.99671 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00361 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47010 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47366 * 120.00054 * 19 17 15 22 22 H 1.48504 * 109.47196 * 240.00453 * 19 17 15 23 23 H 1.08998 * 109.46772 * 305.51226 * 1 2 3 24 24 H 1.08997 * 109.46887 * 65.51072 * 1 2 3 25 25 H 1.08998 * 109.47028 * 185.50997 * 1 2 3 26 26 H 1.08997 * 109.47180 * 306.37958 * 5 2 1 27 27 H 1.08994 * 109.47171 * 66.37772 * 5 2 1 28 28 H 1.08999 * 109.50511 * 299.12863 * 8 6 5 29 29 H 1.09000 * 109.51013 * 59.25682 * 8 6 5 30 30 H 1.09007 * 109.51782 * 182.43843 * 9 8 6 31 31 H 1.08996 * 109.57268 * 62.28243 * 9 8 6 32 32 H 1.09002 * 109.50334 * 297.71752 * 10 9 8 33 33 H 1.08997 * 109.53785 * 177.61602 * 10 9 8 34 34 H 1.08999 * 109.46393 * 180.80575 * 11 10 9 35 35 H 1.08997 * 109.45169 * 60.83075 * 11 10 9 36 36 H 1.09005 * 109.46741 * 297.16517 * 13 12 6 37 37 H 1.09001 * 109.47152 * 57.16557 * 13 12 6 38 38 H 1.09005 * 109.46689 * 299.99552 * 14 13 12 39 39 H 1.09001 * 109.47234 * 59.99610 * 14 13 12 40 40 H 0.97007 * 119.99320 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6968 -0.6739 1.8663 7 1 3.9231 -1.1274 2.8313 8 6 4.4294 -1.4368 0.7603 9 6 5.9389 -1.3553 1.0046 10 6 6.3617 0.1156 1.0513 11 6 5.5730 0.8334 2.1488 12 7 4.1353 0.7275 1.8692 13 6 3.3530 1.5219 2.8257 14 6 3.8840 2.9565 2.8519 15 6 3.0811 3.7717 3.8327 16 1 2.2727 3.3125 4.3821 17 6 3.3786 5.1036 4.0286 18 7 4.3629 5.6629 3.3591 19 14 2.3839 6.1138 5.2449 20 1 1.3405 5.2570 5.8634 21 1 3.2830 6.6411 6.3025 22 1 1.7368 7.2464 4.5352 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.6674 -0.1823 2.3963 27 1 1.8609 -1.7751 1.6259 28 1 4.1154 -2.4805 0.7686 29 1 4.1928 -0.9925 -0.2065 30 1 6.4666 -1.8605 0.1956 31 1 6.1816 -1.8344 1.9530 32 1 6.1554 0.5843 0.0891 33 1 7.4281 0.1816 1.2671 34 1 5.8613 1.8843 2.1752 35 1 5.7904 0.3729 3.1125 36 1 2.3060 1.5276 2.5227 37 1 3.4412 1.0837 3.8198 38 1 4.9311 2.9509 3.1549 39 1 3.7958 3.3948 1.8578 40 1 4.5725 6.5999 3.4973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595518118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -69.241804 kcal Electronic energy + Delta-G solvation = -20960.765990 eV Core-core repulsion = 17902.900529 eV Total energy + Delta-G solvation = -3057.865462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.11929 -36.66587 -35.58897 -34.14422 -32.90417 -32.18825 -29.63724 -29.00097 -27.14852 -24.95422 -23.23118 -21.56003 -20.14360 -19.57560 -18.42774 -16.66385 -16.37888 -15.86234 -15.75179 -14.96749 -14.66716 -14.39486 -14.16896 -13.83472 -13.73929 -13.13980 -13.12151 -12.84965 -12.58672 -12.24818 -12.09224 -11.84354 -11.79149 -11.54762 -11.10695 -11.09500 -10.94235 -10.80644 -10.58643 -10.47597 -10.40050 -10.08191 -9.98264 -9.68992 -9.24170 -9.00196 -8.26832 -7.68991 -5.94010 -3.95681 0.21286 3.00623 3.33326 3.40534 3.43473 3.88091 4.11986 4.33798 4.51252 4.64524 4.72423 4.82647 5.03685 5.13145 5.26241 5.33395 5.41876 5.42450 5.57098 5.63458 5.69748 5.86868 5.92273 6.03268 6.12696 6.14147 6.32459 6.35204 6.42637 6.63092 6.67834 7.00006 7.55966 7.60799 7.81487 7.97510 8.19404 8.49318 9.11662 9.66871 11.17496 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.006221 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.052449 B = 4500.137078 C = 5472.376737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.426 3.574 3 O -0.887 6.887 4 O -0.949 6.949 5 C -0.612 4.612 6 C 0.098 3.902 7 H 0.055 0.945 8 C -0.139 4.139 9 C -0.116 4.116 10 C -0.122 4.122 11 C 0.054 3.946 12 N -0.532 5.532 13 C 0.065 3.935 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.035 0.965 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 -15.883 -4.797 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.604 3.396 3 O -0.884 6.884 4 O -0.946 6.946 5 C -0.740 4.740 6 C -0.012 4.012 7 H 0.073 0.927 8 C -0.176 4.176 9 C -0.153 4.153 10 C -0.160 4.160 11 C -0.073 4.073 12 N -0.258 5.258 13 C -0.061 4.061 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.071 0.929 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.146 0.854 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.153 0.847 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.190 -15.232 -5.930 16.654 hybrid contribution -1.180 -0.042 2.247 2.538 sum -4.370 -15.274 -3.683 16.309 Atomic orbital electron populations 1.30470 1.29202 1.10689 1.11635 1.07998 0.77251 0.76797 0.77572 1.93731 1.76940 1.32428 1.85311 1.93546 1.78663 1.67997 1.54399 1.30444 1.05766 1.13134 1.24653 1.21230 0.89010 0.91808 0.99135 0.92724 1.22056 0.96124 0.99996 0.99472 1.21522 0.95207 0.97334 1.01255 1.21669 0.98907 0.94835 1.00561 1.22161 0.87077 1.02491 0.95593 1.62171 1.04461 1.06205 1.52917 1.22333 0.96847 0.96596 0.90318 1.19188 0.95940 0.88062 0.98175 1.21211 1.16458 0.95000 1.23150 0.92936 1.24978 0.95312 0.97869 0.96160 1.69990 1.29309 1.12320 1.41445 0.86579 0.80134 0.80336 0.81147 1.19907 1.21123 1.21000 0.85384 0.85612 0.86147 0.84700 0.85433 0.91180 0.89560 0.91840 0.92460 0.90860 0.91744 0.88441 0.95489 0.92156 0.96518 0.96373 0.94617 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -6.20 10.62 101.05 1.07 -5.12 16 2 S 2.43 32.52 4.78 -107.50 -0.51 32.01 16 3 O -0.89 -16.60 15.68 -57.83 -0.91 -17.51 16 4 O -0.95 -14.44 15.80 -57.83 -0.91 -15.35 16 5 C -0.61 -7.20 5.02 37.16 0.19 -7.01 16 6 C 0.10 1.44 2.13 -67.72 -0.14 1.29 16 7 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.14 -1.88 4.86 -26.65 -0.13 -2.01 16 9 C -0.12 -1.47 6.00 -26.61 -0.16 -1.63 16 10 C -0.12 -1.79 6.09 -26.66 -0.16 -1.95 16 11 C 0.05 0.96 5.06 -3.83 -0.02 0.94 16 12 N -0.53 -9.81 3.21 -226.69 -0.73 -10.54 16 13 C 0.07 1.38 3.93 -3.83 -0.02 1.36 16 14 C 0.02 0.62 4.52 -27.88 -0.13 0.50 16 15 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.13 1.50 6.35 -51.93 -0.33 1.17 16 27 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.32 5.52 -51.93 -0.29 1.03 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.97 5.85 -51.93 -0.30 1.66 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.20 5.74 -51.93 -0.30 0.91 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.50 6.19 -51.93 -0.32 0.17 16 39 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -35.21 317.94 -9.04 -44.25 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.58 Total: -0.84 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 0.09 Total: -27.16 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.01 Total: -36.92 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.82 Total: -32.86 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 32.52 SS G_CDS: -0.51 Total: 32.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.21 -9.04 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595518118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.995 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds