Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42095 * 108.57976 * 2 1 4 4 O 1.42098 * 108.57808 * 228.97614 * 2 1 3 5 5 C 1.81402 * 101.92135 * 114.48869 * 2 1 3 6 6 C 1.53005 * 109.47158 * 186.37974 * 5 2 1 7 7 H 1.08995 * 109.46010 * 180.70757 * 6 5 2 8 8 C 1.53034 * 109.45906 * 300.67522 * 6 5 2 9 9 C 1.53127 * 109.27333 * 179.19596 * 8 6 5 10 10 C 1.53112 * 109.16103 * 302.34229 * 9 8 6 11 11 C 1.53035 * 109.27836 * 57.65538 * 10 9 8 12 12 N 1.46845 * 109.46034 * 60.72557 * 6 5 2 13 13 C 1.46900 * 111.00221 * 54.14715 * 12 6 5 14 14 C 1.52995 * 109.47586 * 177.16997 * 13 12 6 15 15 C 1.50701 * 109.47663 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99481 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00413 * 179.97438 * 15 14 13 18 18 N 1.31525 * 119.99671 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00361 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47010 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47366 * 120.00054 * 19 17 15 22 22 H 1.48504 * 109.47196 * 240.00453 * 19 17 15 23 23 H 1.08998 * 109.46772 * 305.51226 * 1 2 3 24 24 H 1.08997 * 109.46887 * 65.51072 * 1 2 3 25 25 H 1.08998 * 109.47028 * 185.50997 * 1 2 3 26 26 H 1.08997 * 109.47180 * 306.37958 * 5 2 1 27 27 H 1.08994 * 109.47171 * 66.37772 * 5 2 1 28 28 H 1.08999 * 109.50511 * 299.12863 * 8 6 5 29 29 H 1.09000 * 109.51013 * 59.25682 * 8 6 5 30 30 H 1.09007 * 109.51782 * 182.43843 * 9 8 6 31 31 H 1.08996 * 109.57268 * 62.28243 * 9 8 6 32 32 H 1.09002 * 109.50334 * 297.71752 * 10 9 8 33 33 H 1.08997 * 109.53785 * 177.61602 * 10 9 8 34 34 H 1.08999 * 109.46393 * 180.80575 * 11 10 9 35 35 H 1.08997 * 109.45169 * 60.83075 * 11 10 9 36 36 H 1.09005 * 109.46741 * 297.16517 * 13 12 6 37 37 H 1.09001 * 109.47152 * 57.16557 * 13 12 6 38 38 H 1.09005 * 109.46689 * 299.99552 * 14 13 12 39 39 H 1.09001 * 109.47234 * 59.99610 * 14 13 12 40 40 H 0.97007 * 119.99320 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6968 -0.6739 1.8663 7 1 3.9231 -1.1274 2.8313 8 6 4.4294 -1.4368 0.7603 9 6 5.9389 -1.3553 1.0046 10 6 6.3617 0.1156 1.0513 11 6 5.5730 0.8334 2.1488 12 7 4.1353 0.7275 1.8692 13 6 3.3530 1.5219 2.8257 14 6 3.8840 2.9565 2.8519 15 6 3.0811 3.7717 3.8327 16 1 2.2727 3.3125 4.3821 17 6 3.3786 5.1036 4.0286 18 7 4.3629 5.6629 3.3591 19 14 2.3839 6.1138 5.2449 20 1 1.3405 5.2570 5.8634 21 1 3.2830 6.6411 6.3025 22 1 1.7368 7.2464 4.5352 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.6674 -0.1823 2.3963 27 1 1.8609 -1.7751 1.6259 28 1 4.1154 -2.4805 0.7686 29 1 4.1928 -0.9925 -0.2065 30 1 6.4666 -1.8605 0.1956 31 1 6.1816 -1.8344 1.9530 32 1 6.1554 0.5843 0.0891 33 1 7.4281 0.1816 1.2671 34 1 5.8613 1.8843 2.1752 35 1 5.7904 0.3729 3.1125 36 1 2.3060 1.5276 2.5227 37 1 3.4412 1.0837 3.8198 38 1 4.9311 2.9509 3.1549 39 1 3.7958 3.3948 1.8578 40 1 4.5725 6.5999 3.4973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595518118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -95.428551 kcal Electronic energy + Delta-G solvation = -20961.901533 eV Core-core repulsion = 17902.900529 eV Total energy + Delta-G solvation = -3059.001004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40595 -37.77629 -36.73970 -35.86674 -34.39162 -33.71916 -30.84645 -30.43436 -28.26534 -26.71099 -24.86663 -22.79274 -21.77747 -20.83877 -19.49630 -18.59210 -17.52853 -17.11505 -16.84780 -16.50849 -16.24701 -15.80710 -15.51704 -15.10948 -14.84695 -14.40717 -14.19950 -13.92109 -13.86085 -13.85285 -13.23644 -13.07067 -13.02953 -12.96784 -12.86132 -12.69756 -12.39315 -12.29980 -11.99401 -11.78885 -11.72011 -11.52230 -11.30301 -11.07549 -11.03657 -10.95600 -10.48934 -9.09376 -8.16276 -6.27440 -0.75755 1.40198 1.41728 1.54261 2.06987 2.41864 2.91643 2.96782 3.17110 3.32535 3.61958 3.77112 3.99287 4.11652 4.17329 4.20218 4.21848 4.40312 4.44944 4.54653 4.61389 4.65793 4.69555 4.90368 4.94794 4.97407 5.00961 5.07412 5.15687 5.22557 5.31347 5.47065 5.51042 5.76649 5.84625 6.14775 6.32155 6.37858 6.91000 7.40991 8.96513 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.019042 B = 0.006221 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.052449 B = 4500.137078 C = 5472.376737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.410 3.590 3 O -0.960 6.960 4 O -0.977 6.977 5 C -0.605 4.605 6 C 0.089 3.911 7 H 0.070 0.930 8 C -0.141 4.141 9 C -0.112 4.112 10 C -0.119 4.119 11 C 0.053 3.947 12 N -0.548 5.548 13 C 0.080 3.920 14 C 0.032 3.968 15 C -0.540 4.540 16 H 0.064 0.936 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.280 1.280 23 H 0.141 0.859 24 H 0.133 0.867 25 H 0.159 0.841 26 H 0.144 0.856 27 H 0.177 0.823 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.024 0.976 38 H -0.004 1.004 39 H -0.012 1.012 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 -18.442 -3.403 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.596 3.404 3 O -0.957 6.957 4 O -0.974 6.974 5 C -0.735 4.735 6 C -0.020 4.020 7 H 0.088 0.912 8 C -0.179 4.179 9 C -0.150 4.150 10 C -0.156 4.156 11 C -0.075 4.075 12 N -0.274 5.274 13 C -0.047 4.047 14 C -0.005 4.005 15 C -0.578 4.578 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.204 1.204 22 H -0.206 1.206 23 H 0.160 0.840 24 H 0.151 0.849 25 H 0.177 0.823 26 H 0.162 0.838 27 H 0.195 0.805 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.014 0.986 39 H 0.006 0.994 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.251 -17.806 -4.561 19.116 hybrid contribution -0.547 0.704 1.775 1.986 sum -5.798 -17.102 -2.785 18.272 Atomic orbital electron populations 1.30241 1.23594 1.13712 1.12791 1.07906 0.79320 0.75219 0.77997 1.93669 1.79771 1.35806 1.86485 1.93505 1.80422 1.67725 1.55764 1.30386 1.03941 1.16227 1.22908 1.21442 0.91083 0.89142 1.00357 0.91230 1.22128 0.96539 1.01377 0.97883 1.21536 0.95020 0.95437 1.02958 1.21645 0.99501 0.96265 0.98225 1.22103 0.87601 1.00501 0.97291 1.62065 1.04288 1.08947 1.52064 1.21999 0.97480 0.93766 0.91488 1.18982 0.94942 0.91557 0.95014 1.21685 1.16877 0.95792 1.23496 0.91733 1.26017 0.96446 0.99365 0.98234 1.70155 1.31203 1.12809 1.43283 0.85369 0.78687 0.78409 0.78361 1.18067 1.20431 1.20616 0.84011 0.84879 0.82291 0.83764 0.80478 0.87925 0.91708 0.89943 0.90680 0.92907 0.89993 0.92665 0.94664 0.91091 0.95786 0.98625 0.99373 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -9.85 10.62 113.37 1.20 -8.64 16 2 S 2.41 62.49 4.78 -56.49 -0.27 62.22 16 3 O -0.96 -37.75 15.68 -127.37 -2.00 -39.75 16 4 O -0.98 -29.09 15.80 -127.37 -2.01 -31.10 16 5 C -0.60 -12.39 5.02 71.98 0.36 -12.03 16 6 C 0.09 2.42 2.13 44.94 0.10 2.52 16 7 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 8 C -0.14 -3.54 4.86 30.65 0.15 -3.39 16 9 C -0.11 -2.63 6.00 30.67 0.18 -2.45 16 10 C -0.12 -3.53 6.09 30.64 0.19 -3.35 16 11 C 0.05 1.95 5.06 86.32 0.44 2.39 16 12 N -0.55 -20.64 3.21 -871.13 -2.79 -23.44 16 13 C 0.08 3.43 3.93 86.30 0.34 3.77 16 14 C 0.03 1.81 4.52 29.85 0.13 1.95 16 15 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 18 N -0.93 -59.11 13.29 21.45 0.28 -58.83 16 19 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.14 2.73 6.35 -2.39 -0.02 2.71 16 27 H 0.18 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.95 5.52 -2.39 -0.01 1.93 16 30 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 2.46 5.85 -2.39 -0.01 2.44 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 2.85 5.74 -2.38 -0.01 2.84 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.00 -0.26 6.19 -2.38 -0.01 -0.28 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -82.07 317.94 0.03 -82.04 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.00 Total: 12.11 kcal Atomic # 6 Polarization: -54.04 SS G_CDS: 3.79 Total: -50.25 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.51 Total: -82.26 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -4.01 Total: -70.85 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 62.49 SS G_CDS: -0.27 Total: 62.22 kcal Total: -82.07 0.03 -82.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595518118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.386 kcal (2) G-P(sol) polarization free energy of solvation -82.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds