Wall clock time and date at job start Mon Mar 30 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99531 * 2 1 4 4 H 1.48500 * 109.46995 * 274.98915 * 3 2 1 5 5 H 1.48499 * 109.47343 * 34.98937 * 3 2 1 6 6 H 1.48500 * 109.46930 * 154.99092 * 3 2 1 7 7 C 1.37878 * 120.00642 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00135 * 189.55619 * 7 2 1 9 9 C 1.50700 * 119.99622 * 9.55256 * 7 2 1 10 10 H 1.08994 * 109.50793 * 305.51746 * 9 7 2 11 11 C 1.53124 * 109.50381 * 65.63080 * 9 7 2 12 12 C 1.53109 * 109.16276 * 177.59299 * 11 9 7 13 13 C 1.53045 * 109.27887 * 302.34699 * 12 11 9 14 14 N 1.46850 * 109.52066 * 59.18022 * 13 12 11 15 15 C 1.38448 * 110.99561 * 174.16227 * 14 13 12 16 16 C 1.39500 * 120.95690 * 64.23262 * 15 14 13 17 17 C 1.37776 * 119.21156 * 180.02562 * 16 15 14 18 18 N 1.32179 * 121.22102 * 359.97173 * 17 16 15 19 19 C 1.31632 * 122.11888 * 0.02562 * 18 17 16 20 20 C 1.39526 * 120.62625 * 0.02562 * 19 18 17 21 21 C 1.47463 * 120.63669 * 179.97438 * 20 19 18 22 22 N 1.34782 * 119.99726 * 359.97438 * 21 20 19 23 23 O 1.21590 * 120.00264 * 180.02562 * 21 20 19 24 24 C 1.46842 * 111.19453 * 298.25439 * 14 13 12 25 25 H 0.96994 * 120.00246 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52102 * 297.50278 * 11 9 7 27 27 H 1.09004 * 109.51957 * 57.68566 * 11 9 7 28 28 H 1.08995 * 109.50492 * 62.28774 * 12 11 9 29 29 H 1.08999 * 109.50676 * 182.37152 * 12 11 9 30 30 H 1.08996 * 109.46275 * 299.16132 * 13 12 11 31 31 H 1.09000 * 109.46120 * 179.19529 * 13 12 11 32 32 H 1.07998 * 120.39231 * 359.97438 * 16 15 14 33 33 H 1.07995 * 119.38841 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.68582 * 179.97438 * 19 18 17 35 35 H 0.97000 * 119.99655 * 0.02562 * 22 21 20 36 36 H 0.96990 * 120.00051 * 179.97438 * 22 21 20 37 37 H 1.09009 * 109.46015 * 181.75728 * 24 14 13 38 38 H 1.08995 * 109.46807 * 301.74040 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4122 0.5919 7 6 2.0047 -1.1940 -0.0005 8 1 3.0734 -1.2004 0.1547 9 6 1.2669 -2.4900 -0.2177 10 1 0.4552 -2.5723 0.5051 11 6 0.6934 -2.5201 -1.6372 12 6 -0.0024 -3.8640 -1.8697 13 6 0.9998 -4.9980 -1.6419 14 7 1.5187 -4.9260 -0.2700 15 6 2.3287 -6.0129 0.0116 16 6 3.5263 -6.2125 -0.6755 17 6 4.3044 -7.3067 -0.3665 18 7 3.9369 -8.1672 0.5671 19 6 2.8178 -8.0276 1.2460 20 6 1.9667 -6.9498 0.9997 21 6 0.7127 -6.7935 1.7598 22 7 0.3791 -7.6971 2.7025 23 8 -0.0207 -5.8501 1.5353 24 6 2.2323 -3.6638 -0.0379 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0275 -1.7112 -1.7559 27 1 1.5011 -2.3983 -2.3590 28 1 -0.8344 -3.9683 -1.1733 29 1 -0.3763 -3.9081 -2.8926 30 1 1.8245 -4.9010 -2.3478 31 1 0.5037 -5.9568 -1.7927 32 1 3.8393 -5.5180 -1.4410 33 1 5.2319 -7.4642 -0.8969 34 1 2.5556 -8.7547 2.0003 35 1 0.9641 -8.4500 2.8812 36 1 -0.4454 -7.5942 3.2027 37 1 2.6314 -3.6535 0.9764 38 1 3.0512 -3.5729 -0.7514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:38 Heat of formation + Delta-G solvation = 7.812044 kcal Electronic energy + Delta-G solvation = -21663.584946 eV Core-core repulsion = 18505.909589 eV Total energy + Delta-G solvation = -3157.675356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76748 -38.52763 -38.08464 -34.25146 -33.56021 -32.25693 -31.16943 -30.00231 -29.70385 -24.93638 -24.52216 -24.30687 -21.82896 -21.37256 -20.70688 -18.68202 -18.00051 -17.06393 -16.96918 -15.95793 -15.66990 -14.93603 -14.82585 -14.62128 -14.32431 -13.97409 -13.51966 -13.43288 -13.25701 -12.76455 -12.47417 -12.40165 -12.14467 -11.77894 -10.95228 -10.78270 -10.71695 -10.18303 -10.15337 -9.96505 -9.56820 -9.49099 -9.46371 -9.29470 -9.22131 -9.04732 -8.72234 -8.27980 -7.79991 -5.97762 -4.00021 0.70173 1.15084 3.10098 3.32089 3.39516 3.42016 3.59108 3.90249 4.08489 4.23655 4.48491 4.81103 4.89546 5.03232 5.29596 5.34436 5.48359 5.57771 5.63732 5.71275 5.96732 6.04759 6.18369 6.33555 6.42264 6.48818 6.65303 6.69153 6.91464 6.93312 7.17300 7.32795 7.44490 7.50626 7.76335 7.80554 7.83920 8.02795 8.16529 8.47346 8.53027 9.04381 9.62664 11.11303 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.005276 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.267207 B = 5305.334814 C = 5589.753792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.048 0.952 11 C -0.105 4.105 12 C -0.116 4.116 13 C 0.076 3.924 14 N -0.493 5.493 15 C 0.214 3.786 16 C -0.215 4.215 17 C 0.125 3.875 18 N -0.500 5.500 19 C 0.134 3.866 20 C -0.180 4.180 21 C 0.557 3.443 22 N -0.863 5.863 23 O -0.479 6.479 24 C 0.078 3.922 25 H 0.260 0.740 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.393 0.607 36 H 0.403 0.597 37 H 0.060 0.940 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -16.746 0.377 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.066 0.934 11 C -0.143 4.143 12 C -0.153 4.153 13 C -0.050 4.050 14 N -0.214 5.214 15 C 0.110 3.890 16 C -0.237 4.237 17 C -0.030 4.030 18 N -0.210 5.210 19 C -0.026 4.026 20 C -0.187 4.187 21 C 0.340 3.660 22 N -0.430 5.430 23 O -0.350 6.350 24 C -0.046 4.046 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.222 0.778 36 H 0.234 0.766 37 H 0.078 0.922 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.670 -16.589 0.551 16.999 hybrid contribution 0.667 1.300 -0.410 1.518 sum 4.337 -15.288 0.141 15.892 Atomic orbital electron populations 1.69990 1.05869 1.26422 1.49824 1.24918 0.94719 0.98883 0.95016 0.86676 0.80040 0.83935 0.77919 1.20757 1.21292 1.19965 1.21076 0.93917 0.90945 1.49795 0.92874 1.18671 0.94346 0.89707 0.93590 0.93423 1.21607 0.99055 0.94559 0.99102 1.21651 0.98265 0.95735 0.99698 1.22026 0.97473 0.99467 0.86029 1.59330 1.35711 1.00621 1.25753 1.19385 0.89438 0.90392 0.89804 1.22938 0.97006 1.00637 1.03147 1.22701 0.98420 0.89341 0.92569 1.67636 1.16546 1.29272 1.07500 1.22864 0.89085 0.94427 0.96202 1.21084 0.98251 0.98345 1.01020 1.17868 0.85610 0.82594 0.79951 1.43813 1.27755 1.29496 1.41924 1.90999 1.50579 1.29099 1.64284 1.22411 0.95837 0.87148 0.99253 0.93038 0.90710 0.94858 0.91305 0.93187 0.95334 0.92322 0.84272 0.82603 0.82638 0.77841 0.76638 0.92168 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 12.19 55.43 0.68 -25.16 16 2 C 0.07 1.87 5.22 -17.82 -0.09 1.78 16 3 Si 0.89 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.39 8.48 -34.44 -0.29 -14.68 16 8 H 0.05 1.45 7.77 -52.49 -0.41 1.04 16 9 C 0.06 1.43 2.13 -91.69 -0.19 1.23 16 10 H 0.05 1.41 8.09 -51.93 -0.42 0.99 16 11 C -0.11 -2.47 5.09 -26.61 -0.14 -2.61 16 12 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 13 C 0.08 1.37 5.17 -3.83 -0.02 1.35 16 14 N -0.49 -9.61 2.71 -170.71 -0.46 -10.07 16 15 C 0.21 3.56 4.68 -83.40 -0.39 3.16 16 16 C -0.21 -2.99 8.78 -39.28 -0.35 -3.34 16 17 C 0.12 1.50 11.15 -17.57 -0.20 1.30 16 18 N -0.50 -6.30 10.34 -13.01 -0.13 -6.44 16 19 C 0.13 1.57 10.71 -17.16 -0.18 1.39 16 20 C -0.18 -2.66 5.91 -104.65 -0.62 -3.27 16 21 C 0.56 8.56 8.04 -12.50 -0.10 8.46 16 22 N -0.86 -8.48 8.83 30.44 0.27 -8.21 16 23 O -0.48 -9.85 16.00 5.29 0.08 -9.77 16 24 C 0.08 1.71 4.34 -3.84 -0.02 1.69 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.07 1.96 6.99 -51.93 -0.36 1.60 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.48 7.62 -51.93 -0.40 0.09 16 31 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.14 1.83 7.28 -52.49 -0.38 1.45 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.16 1.19 6.42 -52.49 -0.34 0.85 16 35 H 0.39 2.47 6.89 -40.82 -0.28 2.19 16 36 H 0.40 3.52 8.93 -40.82 -0.36 3.15 16 37 H 0.06 1.37 8.10 -51.92 -0.42 0.95 16 38 H 0.02 0.50 7.40 -51.93 -0.38 0.11 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -33.20 311.12 -7.65 -40.86 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.00 Total: 3.70 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.75 Total: -6.01 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.35 Total: -49.88 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.20 -7.65 -40.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.671 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds