Wall clock time and date at job start Mon Mar 30 2020 02:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99531 * 2 1 4 4 H 1.48500 * 109.46995 * 274.98915 * 3 2 1 5 5 H 1.48499 * 109.47343 * 34.98937 * 3 2 1 6 6 H 1.48500 * 109.46930 * 154.99092 * 3 2 1 7 7 C 1.37878 * 120.00642 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00135 * 189.55619 * 7 2 1 9 9 C 1.50700 * 119.99622 * 9.55256 * 7 2 1 10 10 H 1.08994 * 109.50793 * 305.51746 * 9 7 2 11 11 C 1.53124 * 109.50381 * 65.63080 * 9 7 2 12 12 C 1.53109 * 109.16276 * 177.59299 * 11 9 7 13 13 C 1.53045 * 109.27887 * 302.34699 * 12 11 9 14 14 N 1.46850 * 109.52066 * 59.18022 * 13 12 11 15 15 C 1.38448 * 110.99561 * 174.16227 * 14 13 12 16 16 C 1.39500 * 120.95690 * 64.23262 * 15 14 13 17 17 C 1.37776 * 119.21156 * 180.02562 * 16 15 14 18 18 N 1.32179 * 121.22102 * 359.97173 * 17 16 15 19 19 C 1.31632 * 122.11888 * 0.02562 * 18 17 16 20 20 C 1.39526 * 120.62625 * 0.02562 * 19 18 17 21 21 C 1.47463 * 120.63669 * 179.97438 * 20 19 18 22 22 N 1.34782 * 119.99726 * 359.97438 * 21 20 19 23 23 O 1.21590 * 120.00264 * 180.02562 * 21 20 19 24 24 C 1.46842 * 111.19453 * 298.25439 * 14 13 12 25 25 H 0.96994 * 120.00246 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52102 * 297.50278 * 11 9 7 27 27 H 1.09004 * 109.51957 * 57.68566 * 11 9 7 28 28 H 1.08995 * 109.50492 * 62.28774 * 12 11 9 29 29 H 1.08999 * 109.50676 * 182.37152 * 12 11 9 30 30 H 1.08996 * 109.46275 * 299.16132 * 13 12 11 31 31 H 1.09000 * 109.46120 * 179.19529 * 13 12 11 32 32 H 1.07998 * 120.39231 * 359.97438 * 16 15 14 33 33 H 1.07995 * 119.38841 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.68582 * 179.97438 * 19 18 17 35 35 H 0.97000 * 119.99655 * 0.02562 * 22 21 20 36 36 H 0.96990 * 120.00051 * 179.97438 * 22 21 20 37 37 H 1.09009 * 109.46015 * 181.75728 * 24 14 13 38 38 H 1.08995 * 109.46807 * 301.74040 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4122 0.5919 7 6 2.0047 -1.1940 -0.0005 8 1 3.0734 -1.2004 0.1547 9 6 1.2669 -2.4900 -0.2177 10 1 0.4552 -2.5723 0.5051 11 6 0.6934 -2.5201 -1.6372 12 6 -0.0024 -3.8640 -1.8697 13 6 0.9998 -4.9980 -1.6419 14 7 1.5187 -4.9260 -0.2700 15 6 2.3287 -6.0129 0.0116 16 6 3.5263 -6.2125 -0.6755 17 6 4.3044 -7.3067 -0.3665 18 7 3.9369 -8.1672 0.5671 19 6 2.8178 -8.0276 1.2460 20 6 1.9667 -6.9498 0.9997 21 6 0.7127 -6.7935 1.7598 22 7 0.3791 -7.6971 2.7025 23 8 -0.0207 -5.8501 1.5353 24 6 2.2323 -3.6638 -0.0379 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0275 -1.7112 -1.7559 27 1 1.5011 -2.3983 -2.3590 28 1 -0.8344 -3.9683 -1.1733 29 1 -0.3763 -3.9081 -2.8926 30 1 1.8245 -4.9010 -2.3478 31 1 0.5037 -5.9568 -1.7927 32 1 3.8393 -5.5180 -1.4410 33 1 5.2319 -7.4642 -0.8969 34 1 2.5556 -8.7547 2.0003 35 1 0.9641 -8.4500 2.8812 36 1 -0.4454 -7.5942 3.2027 37 1 2.6314 -3.6535 0.9764 38 1 3.0512 -3.5729 -0.7514 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:37 Heat of formation + Delta-G solvation = -16.875108 kcal Electronic energy + Delta-G solvation = -21664.655461 eV Core-core repulsion = 18505.909589 eV Total energy + Delta-G solvation = -3158.745872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91657 -39.84129 -39.40976 -35.95933 -34.70896 -34.05458 -32.15971 -31.78505 -31.12388 -26.96862 -25.80990 -25.49111 -23.36813 -22.98116 -21.79495 -20.42863 -19.17520 -18.49080 -18.12344 -17.65197 -16.74609 -16.61385 -16.09569 -15.91962 -15.74694 -15.44194 -15.01534 -14.60384 -14.58365 -14.30622 -14.22279 -14.11100 -13.50542 -13.21668 -12.85715 -12.75216 -12.60724 -11.98570 -11.83013 -11.45933 -11.36450 -10.99678 -10.82956 -10.55833 -10.49163 -10.43617 -10.41315 -10.20759 -9.22770 -8.13102 -6.23609 -0.34070 0.07589 1.40244 1.40535 1.51533 2.00312 2.40965 2.60200 2.78764 2.85070 3.16632 3.38328 3.83700 3.87276 3.92930 4.10022 4.14976 4.26013 4.42912 4.46261 4.52289 4.60143 4.65518 4.76878 4.84923 4.94003 5.08640 5.18877 5.34623 5.39358 5.50354 5.61202 5.86479 6.00926 6.02040 6.06926 6.37854 6.42677 6.59522 6.83305 6.89338 7.43336 7.50301 8.96068 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022195 B = 0.005276 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.267207 B = 5305.334814 C = 5589.753792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.054 0.946 9 C 0.056 3.944 10 H -0.009 1.009 11 C -0.096 4.096 12 C -0.108 4.108 13 C 0.080 3.920 14 N -0.508 5.508 15 C 0.181 3.819 16 C -0.218 4.218 17 C 0.137 3.863 18 N -0.504 5.504 19 C 0.151 3.849 20 C -0.197 4.197 21 C 0.553 3.447 22 N -0.835 5.835 23 O -0.546 6.546 24 C 0.097 3.903 25 H 0.261 0.739 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.414 0.586 36 H 0.410 0.590 37 H 0.040 0.960 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -18.905 -0.050 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.010 0.990 11 C -0.134 4.134 12 C -0.146 4.146 13 C -0.045 4.045 14 N -0.229 5.229 15 C 0.077 3.923 16 C -0.241 4.241 17 C -0.017 4.017 18 N -0.213 5.213 19 C -0.008 4.008 20 C -0.203 4.203 21 C 0.338 3.662 22 N -0.402 5.402 23 O -0.422 6.422 24 C -0.028 4.028 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.210 0.790 34 H 0.215 0.785 35 H 0.246 0.754 36 H 0.242 0.758 37 H 0.059 0.941 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.979 -18.827 0.157 19.755 hybrid contribution -0.030 1.837 -0.199 1.848 sum 5.950 -16.991 -0.042 18.002 Atomic orbital electron populations 1.70143 1.07542 1.27276 1.50736 1.25761 0.95498 1.02544 0.94566 0.85592 0.78814 0.79275 0.78272 1.19737 1.21139 1.19071 1.21455 0.94119 0.92266 1.49785 0.92761 1.18532 0.93395 0.91054 0.93330 0.99047 1.21399 0.98517 0.95564 0.97902 1.21544 0.97727 0.94627 1.00656 1.21992 0.97468 0.98992 0.86064 1.59068 1.36689 1.00490 1.26657 1.19560 0.90636 0.90320 0.91771 1.22977 0.96258 1.01625 1.03197 1.23239 0.98888 0.87872 0.91747 1.67797 1.16575 1.29275 1.07681 1.23421 0.87800 0.93631 0.95995 1.21185 0.98735 0.99389 1.01040 1.18143 0.85400 0.82332 0.80366 1.43542 1.28071 1.28670 1.39893 1.90983 1.52610 1.32006 1.66646 1.21962 0.94973 0.87513 0.98397 0.93033 0.94184 0.93988 0.94120 0.90210 0.93415 0.90749 0.83691 0.79034 0.78508 0.75378 0.75753 0.94100 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.11 12.19 21.45 0.26 -55.85 16 2 C 0.02 0.89 5.22 84.65 0.44 1.33 16 3 Si 0.96 44.72 29.55 68.60 2.03 46.75 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.54 -30.89 8.48 25.60 0.22 -30.67 16 8 H 0.05 3.02 7.77 -2.92 -0.02 3.00 16 9 C 0.06 3.02 2.13 -11.49 -0.02 2.99 16 10 H -0.01 -0.57 8.09 -2.39 -0.02 -0.58 16 11 C -0.10 -4.68 5.09 30.67 0.16 -4.53 16 12 C -0.11 -4.40 6.09 30.65 0.19 -4.21 16 13 C 0.08 2.87 5.17 86.33 0.45 3.32 16 14 N -0.51 -20.15 2.71 -694.00 -1.88 -22.03 16 15 C 0.18 5.85 4.68 39.05 0.18 6.03 16 16 C -0.22 -5.59 8.78 22.46 0.20 -5.39 16 17 C 0.14 2.79 11.15 84.53 0.94 3.73 16 18 N -0.50 -10.71 10.34 -195.08 -2.02 -12.73 16 19 C 0.15 3.02 10.71 85.03 0.91 3.94 16 20 C -0.20 -5.52 5.91 -19.89 -0.12 -5.64 16 21 C 0.55 16.86 8.04 86.67 0.70 17.56 16 22 N -0.83 -14.92 8.83 -175.86 -1.55 -16.48 16 23 O -0.55 -23.52 16.00 -4.00 -0.06 -23.58 16 24 C 0.10 4.38 4.34 86.33 0.37 4.76 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.04 2.20 6.99 -2.39 -0.02 2.19 16 27 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.05 1.52 7.62 -2.39 -0.02 1.50 16 31 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 32 H 0.15 3.47 7.28 -2.91 -0.02 3.45 16 33 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.20 2.07 6.42 -2.91 -0.02 2.05 16 35 H 0.41 3.82 6.89 -92.71 -0.64 3.19 16 36 H 0.41 6.62 8.93 -92.72 -0.83 5.79 16 37 H 0.04 1.94 8.10 -2.38 -0.02 1.92 16 38 H 0.04 1.48 7.40 -2.39 -0.02 1.46 16 Total: -1.00 -77.46 311.12 1.01 -76.45 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.37 Total: 14.24 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 4.61 Total: -6.78 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -5.19 Total: -107.09 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.46 1.01 -76.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.575 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds