Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47288 * 299.99960 * 3 2 1 6 6 H 1.48498 * 109.47106 * 60.00560 * 3 2 1 7 7 C 1.37879 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99861 * 359.72407 * 7 2 1 10 10 H 1.08998 * 109.49589 * 300.27879 * 9 7 2 11 11 C 1.53037 * 109.49582 * 180.21028 * 9 7 2 12 12 C 1.53037 * 109.53720 * 178.71659 * 11 9 7 13 13 C 1.53196 * 109.34150 * 61.31690 * 12 11 9 14 14 N 1.46925 * 108.77383 * 305.38203 * 13 12 11 15 15 C 1.34773 * 120.62985 * 233.63139 * 14 13 12 16 16 O 1.21578 * 120.00068 * 174.78557 * 15 14 13 17 17 N 1.34780 * 120.00095 * 354.77949 * 15 14 13 18 18 C 1.39387 * 120.00414 * 185.67884 * 17 15 14 19 19 C 1.39047 * 119.69403 * 17.73584 * 18 17 15 20 20 C 1.38352 * 119.10386 * 179.97438 * 19 18 17 21 21 C 1.38850 * 118.49300 * 0.02562 * 20 19 18 22 22 C 1.38055 * 119.31294 * 359.97438 * 21 20 19 23 23 N 1.31944 * 120.85120 * 359.72330 * 22 21 20 24 24 C 1.46921 * 118.73799 * 53.60676 * 14 13 12 25 25 H 0.96995 * 119.99480 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46077 * 298.69989 * 11 9 7 27 27 H 1.08995 * 109.46465 * 58.66125 * 11 9 7 28 28 H 1.09004 * 109.47378 * 301.36083 * 12 11 9 29 29 H 1.09003 * 109.49547 * 181.28415 * 12 11 9 30 30 H 1.08998 * 109.58518 * 185.59142 * 13 12 11 31 31 H 1.09000 * 109.70246 * 65.23777 * 13 12 11 32 32 H 0.97001 * 120.00115 * 5.68343 * 17 15 14 33 33 H 1.08000 * 120.45294 * 0.02562 * 19 18 17 34 34 H 1.08001 * 120.75546 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.34293 * 179.97438 * 21 20 19 36 36 H 1.08007 * 119.57726 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.58681 * 186.60286 * 24 14 13 38 38 H 1.08994 * 109.70370 * 66.25326 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 0.0052 10 1 0.6242 -2.5534 0.8952 11 6 2.2449 -3.6628 0.0086 12 6 1.4810 -4.9883 0.0467 13 6 0.6038 -5.1045 -1.2039 14 7 -0.2548 -3.9155 -1.2914 15 6 -1.5914 -4.0409 -1.4105 16 8 -2.2993 -3.0528 -1.3866 17 7 -2.1433 -5.2619 -1.5563 18 6 -3.5106 -5.3844 -1.7979 19 6 -4.2312 -4.2849 -2.2511 20 6 -5.5877 -4.4203 -2.4875 21 6 -6.1794 -5.6558 -2.2611 22 6 -5.4029 -6.7048 -1.8108 23 7 -4.1100 -6.5476 -1.5996 24 6 0.3713 -2.5871 -1.2459 25 1 -0.4849 0.8400 0.0004 26 1 2.8552 -3.6218 -0.8936 27 1 2.8881 -3.5885 0.8854 28 1 0.8521 -5.0198 0.9364 29 1 2.1897 -5.8161 0.0721 30 1 -0.0159 -5.9984 -1.1338 31 1 1.2345 -5.1658 -2.0908 32 1 -1.5891 -6.0554 -1.4930 33 1 -3.7387 -3.3382 -2.4171 34 1 -6.1732 -3.5838 -2.8394 35 1 -7.2361 -5.7948 -2.4354 36 1 -5.8587 -7.6678 -1.6336 37 1 -0.4019 -1.8200 -1.2036 38 1 0.9843 -2.4392 -2.1349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596445612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = 22.119216 kcal Electronic energy + Delta-G solvation = -21284.004057 eV Core-core repulsion = 18126.949106 eV Total energy + Delta-G solvation = -3157.054951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78435 -39.29324 -37.04781 -34.67794 -33.37083 -32.22299 -31.93027 -29.99207 -29.44123 -25.17484 -24.89862 -23.54516 -22.74191 -21.90317 -20.31306 -18.99906 -18.17394 -17.30674 -16.31909 -16.19944 -15.73356 -15.03361 -14.80419 -14.46263 -14.11013 -13.84890 -13.77254 -13.41075 -13.07036 -12.84485 -12.64313 -12.31492 -12.12281 -11.86015 -11.04633 -10.96030 -10.64176 -10.53129 -10.43963 -10.28050 -9.95484 -9.74553 -9.53970 -9.30951 -9.16116 -8.99205 -8.47513 -8.19602 -7.76174 -6.02328 -4.11443 1.28977 1.42785 2.74676 3.28837 3.37352 3.40131 3.43859 4.05421 4.10387 4.41287 4.66497 4.95187 5.12231 5.21851 5.25468 5.28393 5.40508 5.45578 5.54820 5.89941 5.99851 6.08111 6.09504 6.25371 6.34800 6.48024 6.51424 6.58638 6.71012 6.89350 6.92844 7.06357 7.20852 7.26754 7.63945 7.83872 7.94088 8.06378 8.34641 8.35949 8.89493 8.94407 9.54565 11.02850 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.004728 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.639477 B = 5920.865172 C = 6906.767567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.038 3.962 10 H 0.030 0.970 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.702 3.298 16 O -0.558 6.558 17 N -0.673 5.673 18 C 0.380 3.620 19 C -0.186 4.186 20 C -0.058 4.058 21 C -0.211 4.211 22 C 0.121 3.879 23 N -0.527 5.527 24 C 0.126 3.874 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.174 0.826 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -12.668 -4.960 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.014 4.014 14 N -0.346 5.346 15 C 0.404 3.596 16 O -0.434 6.434 17 N -0.323 5.323 18 C 0.148 3.852 19 C -0.209 4.209 20 C -0.084 4.084 21 C -0.233 4.233 22 C -0.036 4.036 23 N -0.243 5.243 24 C 0.006 3.994 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.245 0.755 33 H 0.191 0.809 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.172 0.828 37 H 0.143 0.857 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.288 -12.450 -4.651 14.702 hybrid contribution 0.212 1.017 -0.140 1.048 sum -6.075 -11.433 -4.791 13.805 Atomic orbital electron populations 1.69898 1.05719 1.26781 1.49250 1.25063 0.94887 0.99294 0.94788 0.86535 0.80054 0.83771 0.77649 1.19780 1.20953 1.21011 1.21103 0.92959 0.90014 1.51885 0.92241 1.19001 0.92639 0.92368 0.94074 0.95190 1.21620 0.98544 0.93901 1.00723 1.21949 0.98637 0.99367 0.97242 1.21616 0.93517 0.87099 0.99140 1.47886 1.02815 1.09645 1.74283 1.15820 0.83140 0.82172 0.78493 1.90814 1.59396 1.36418 1.56778 1.42785 1.06215 1.09400 1.73902 1.18112 0.84389 0.90219 0.92460 1.22772 0.95012 1.01909 1.01218 1.21546 0.94474 0.97181 0.95223 1.21953 1.01276 0.94495 1.05582 1.22302 0.87791 0.98798 0.94697 1.66991 1.12606 1.24679 1.20011 1.22331 0.98511 0.79877 0.98687 0.92663 0.93066 0.92870 0.92049 0.91992 0.92015 0.91492 0.75471 0.80872 0.84835 0.85201 0.82803 0.85689 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 11.40 55.43 0.63 -24.59 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.81 8.56 -34.44 -0.29 -14.11 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.25 16 12 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 13 C 0.11 1.64 6.39 -3.71 -0.02 1.62 16 14 N -0.61 -11.90 2.97 -178.50 -0.53 -12.43 16 15 C 0.70 14.09 8.15 -86.92 -0.71 13.39 16 16 O -0.56 -13.16 12.53 5.30 0.07 -13.10 16 17 N -0.67 -11.12 5.33 -15.81 -0.08 -11.21 16 18 C 0.38 6.32 7.53 -154.72 -1.16 5.16 16 19 C -0.19 -3.08 8.83 -39.24 -0.35 -3.42 16 20 C -0.06 -0.76 10.17 -39.31 -0.40 -1.16 16 21 C -0.21 -2.37 10.11 -39.42 -0.40 -2.77 16 22 C 0.12 1.46 11.17 -17.57 -0.20 1.26 16 23 N -0.53 -7.92 10.39 -12.37 -0.13 -8.05 16 24 C 0.13 2.95 5.41 -3.71 -0.02 2.93 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.75 5.64 -51.93 -0.29 0.45 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.41 5.64 6.31 -40.82 -0.26 5.38 16 33 H 0.17 3.27 5.27 -52.57 -0.28 3.00 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.13 3.43 5.13 -51.93 -0.27 3.16 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -30.95 308.11 -9.44 -40.38 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.86 Total: 7.71 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -4.15 Total: 0.73 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.11 Total: -56.28 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.95 -9.44 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596445612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.504 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds