Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47288 * 299.99960 * 3 2 1 6 6 H 1.48498 * 109.47106 * 60.00560 * 3 2 1 7 7 C 1.37879 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99861 * 359.72407 * 7 2 1 10 10 H 1.08998 * 109.49589 * 300.27879 * 9 7 2 11 11 C 1.53037 * 109.49582 * 180.21028 * 9 7 2 12 12 C 1.53037 * 109.53720 * 178.71659 * 11 9 7 13 13 C 1.53196 * 109.34150 * 61.31690 * 12 11 9 14 14 N 1.46925 * 108.77383 * 305.38203 * 13 12 11 15 15 C 1.34773 * 120.62985 * 233.63139 * 14 13 12 16 16 O 1.21578 * 120.00068 * 174.78557 * 15 14 13 17 17 N 1.34780 * 120.00095 * 354.77949 * 15 14 13 18 18 C 1.39387 * 120.00414 * 185.67884 * 17 15 14 19 19 C 1.39047 * 119.69403 * 17.73584 * 18 17 15 20 20 C 1.38352 * 119.10386 * 179.97438 * 19 18 17 21 21 C 1.38850 * 118.49300 * 0.02562 * 20 19 18 22 22 C 1.38055 * 119.31294 * 359.97438 * 21 20 19 23 23 N 1.31944 * 120.85120 * 359.72330 * 22 21 20 24 24 C 1.46921 * 118.73799 * 53.60676 * 14 13 12 25 25 H 0.96995 * 119.99480 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46077 * 298.69989 * 11 9 7 27 27 H 1.08995 * 109.46465 * 58.66125 * 11 9 7 28 28 H 1.09004 * 109.47378 * 301.36083 * 12 11 9 29 29 H 1.09003 * 109.49547 * 181.28415 * 12 11 9 30 30 H 1.08998 * 109.58518 * 185.59142 * 13 12 11 31 31 H 1.09000 * 109.70246 * 65.23777 * 13 12 11 32 32 H 0.97001 * 120.00115 * 5.68343 * 17 15 14 33 33 H 1.08000 * 120.45294 * 0.02562 * 19 18 17 34 34 H 1.08001 * 120.75546 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.34293 * 179.97438 * 21 20 19 36 36 H 1.08007 * 119.57726 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.58681 * 186.60286 * 24 14 13 38 38 H 1.08994 * 109.70370 * 66.25326 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 0.0052 10 1 0.6242 -2.5534 0.8952 11 6 2.2449 -3.6628 0.0086 12 6 1.4810 -4.9883 0.0467 13 6 0.6038 -5.1045 -1.2039 14 7 -0.2548 -3.9155 -1.2914 15 6 -1.5914 -4.0409 -1.4105 16 8 -2.2993 -3.0528 -1.3866 17 7 -2.1433 -5.2619 -1.5563 18 6 -3.5106 -5.3844 -1.7979 19 6 -4.2312 -4.2849 -2.2511 20 6 -5.5877 -4.4203 -2.4875 21 6 -6.1794 -5.6558 -2.2611 22 6 -5.4029 -6.7048 -1.8108 23 7 -4.1100 -6.5476 -1.5996 24 6 0.3713 -2.5871 -1.2459 25 1 -0.4849 0.8400 0.0004 26 1 2.8552 -3.6218 -0.8936 27 1 2.8881 -3.5885 0.8854 28 1 0.8521 -5.0198 0.9364 29 1 2.1897 -5.8161 0.0721 30 1 -0.0159 -5.9984 -1.1338 31 1 1.2345 -5.1658 -2.0908 32 1 -1.5891 -6.0554 -1.4930 33 1 -3.7387 -3.3382 -2.4171 34 1 -6.1732 -3.5838 -2.8394 35 1 -7.2361 -5.7948 -2.4354 36 1 -5.8587 -7.6678 -1.6336 37 1 -0.4019 -1.8200 -1.2036 38 1 0.9843 -2.4392 -2.1349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596445612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = 2.744782 kcal Electronic energy + Delta-G solvation = -21284.844196 eV Core-core repulsion = 18126.949106 eV Total energy + Delta-G solvation = -3157.895089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12642 -40.57370 -38.59872 -36.12098 -35.18711 -33.56014 -33.30225 -31.60971 -30.71105 -27.09600 -26.38527 -24.64197 -24.00869 -23.45905 -21.84413 -20.51194 -19.55950 -18.75342 -18.16539 -17.37249 -17.04527 -16.59547 -16.39728 -15.98506 -15.41242 -15.28209 -15.01569 -14.85155 -14.56200 -14.32177 -14.04182 -13.87391 -13.59867 -13.06415 -12.91023 -12.66859 -12.30681 -12.22014 -11.88052 -11.85412 -11.65428 -11.15818 -10.96639 -10.87310 -10.73296 -10.54455 -10.47541 -9.62438 -9.13288 -8.10180 -6.27340 0.19449 0.36649 1.34464 1.42222 1.43183 1.54450 1.97547 2.42289 2.72771 2.95797 3.18561 3.66109 3.92761 3.97734 4.11142 4.15158 4.26215 4.35952 4.41470 4.57270 4.70075 4.76446 4.80367 4.92203 5.04785 5.08935 5.20840 5.24516 5.28101 5.33352 5.39138 5.55207 5.58842 5.77491 5.90651 5.92381 6.04215 6.33816 6.71311 6.86134 7.08060 7.38765 7.43606 8.93373 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.004728 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.639477 B = 5920.865172 C = 6906.767567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.036 3.964 10 H -0.015 1.015 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.104 3.896 14 N -0.615 5.615 15 C 0.698 3.302 16 O -0.603 6.603 17 N -0.658 5.658 18 C 0.351 3.649 19 C -0.218 4.218 20 C -0.059 4.059 21 C -0.193 4.193 22 C 0.119 3.881 23 N -0.535 5.535 24 C 0.141 3.859 25 H 0.259 0.741 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.419 0.581 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.197 0.803 37 H 0.080 0.920 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -15.296 -5.551 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.017 3.983 10 H 0.003 0.997 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.018 4.018 14 N -0.350 5.350 15 C 0.400 3.600 16 O -0.483 6.483 17 N -0.309 5.309 18 C 0.122 3.878 19 C -0.241 4.241 20 C -0.085 4.085 21 C -0.214 4.214 22 C -0.038 4.038 23 N -0.251 5.251 24 C 0.019 3.981 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.260 0.740 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.191 0.809 36 H 0.214 0.786 37 H 0.098 0.902 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.540 -15.147 -5.245 17.312 hybrid contribution 0.150 1.753 0.036 1.760 sum -6.389 -13.393 -5.209 15.727 Atomic orbital electron populations 1.70099 1.07406 1.27191 1.50633 1.25889 0.95530 1.02893 0.94591 0.85516 0.79322 0.79512 0.77380 1.18395 1.20794 1.21061 1.21535 0.93335 0.91350 1.51034 0.91833 1.18939 0.93124 0.93935 0.92299 0.99701 1.21507 0.97630 0.93887 1.01200 1.21911 0.98977 0.98611 0.96901 1.21980 0.93686 0.86203 0.99885 1.47761 1.03218 1.09744 1.74252 1.15950 0.83101 0.82721 0.78263 1.90806 1.60562 1.38338 1.58567 1.42412 1.06733 1.08333 1.73468 1.18216 0.84325 0.91094 0.94205 1.22600 0.96882 1.00900 1.03706 1.21875 0.93129 0.99109 0.94436 1.22418 1.03195 0.92895 1.02893 1.23139 0.86805 1.00796 0.93073 1.67054 1.14186 1.23561 1.20303 1.21727 0.97019 0.81175 0.98196 0.93143 0.91994 0.92904 0.93410 0.87445 0.88660 0.89188 0.74015 0.84269 0.82708 0.80876 0.78648 0.90181 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 11.40 21.45 0.24 -55.20 16 2 C 0.01 0.58 5.31 84.65 0.45 1.03 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.53 -29.11 8.56 25.60 0.22 -28.89 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.04 1.82 2.25 -11.46 -0.03 1.80 16 10 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 11 C -0.10 -3.94 5.11 30.62 0.16 -3.78 16 12 C -0.13 -3.65 6.08 30.67 0.19 -3.46 16 13 C 0.10 2.91 6.39 86.36 0.55 3.46 16 14 N -0.61 -24.54 2.97 -836.93 -2.49 -27.03 16 15 C 0.70 29.32 8.15 179.05 1.46 30.78 16 16 O -0.60 -30.78 12.53 -3.96 -0.05 -30.83 16 17 N -0.66 -21.97 5.33 -322.20 -1.72 -23.69 16 18 C 0.35 11.73 7.53 132.92 1.00 12.73 16 19 C -0.22 -7.44 8.83 22.49 0.20 -7.25 16 20 C -0.06 -1.48 10.17 22.44 0.23 -1.25 16 21 C -0.19 -3.63 10.11 22.37 0.23 -3.40 16 22 C 0.12 2.44 11.17 84.63 0.95 3.39 16 23 N -0.54 -15.11 10.39 -193.05 -2.01 -17.11 16 24 C 0.14 6.93 5.41 86.36 0.47 7.40 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.10 2.03 5.64 -2.39 -0.01 2.02 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.42 11.13 6.31 -92.71 -0.59 10.55 16 33 H 0.14 5.76 5.27 -4.16 -0.02 5.74 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.08 4.72 5.13 -2.39 -0.01 4.71 16 38 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -73.89 308.11 2.56 -71.33 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.49 Total: 23.93 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.06 Total: 12.56 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -5.97 Total: -123.02 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -73.89 2.56 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596445612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.074 kcal (2) G-P(sol) polarization free energy of solvation -73.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds