Wall clock time and date at job start Mon Mar 30 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48502 * 109.46987 * 269.99626 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99762 * 3 2 1 6 6 H 1.48503 * 109.47324 * 149.99999 * 3 2 1 7 7 C 1.37878 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00058 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.49788 * 60.06059 * 9 7 2 11 11 C 1.53039 * 109.52384 * 180.14376 * 9 7 2 12 12 C 1.53032 * 109.53791 * 181.33197 * 11 9 7 13 13 C 1.53628 * 109.24243 * 298.50995 * 12 11 9 14 14 N 1.46924 * 108.54283 * 54.85698 * 13 12 11 15 15 C 1.34780 * 120.63277 * 126.36946 * 14 13 12 16 16 O 1.21586 * 119.99989 * 174.95154 * 15 14 13 17 17 N 1.34769 * 119.99601 * 355.22397 * 15 14 13 18 18 C 1.39975 * 120.00006 * 187.03921 * 17 15 14 19 19 C 1.39279 * 120.48835 * 212.39775 * 18 17 15 20 20 C 1.38511 * 118.35825 * 179.77806 * 19 18 17 21 21 C 1.38270 * 119.23466 * 0.49787 * 20 19 18 22 22 N 1.31853 * 120.91970 * 359.74239 * 21 20 19 23 23 C 1.31818 * 121.79743 * 0.02562 * 22 21 20 24 24 C 1.46936 * 118.73871 * 306.09738 * 14 13 12 25 25 H 0.97003 * 120.00440 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.45947 * 301.35322 * 11 9 7 27 27 H 1.08999 * 109.45811 * 61.31905 * 11 9 7 28 28 H 1.08991 * 109.50143 * 58.58794 * 12 11 9 29 29 H 1.09001 * 109.49703 * 178.68815 * 12 11 9 30 30 H 1.09003 * 109.74009 * 295.12270 * 13 12 11 31 31 H 1.08997 * 109.66677 * 174.55018 * 13 12 11 32 32 H 0.96999 * 120.00306 * 7.03515 * 17 15 14 33 33 H 1.07992 * 120.81722 * 0.02562 * 19 18 17 34 34 H 1.07991 * 120.37863 * 180.23371 * 20 19 18 35 35 H 1.07996 * 119.53540 * 179.76437 * 21 20 19 36 36 H 1.08001 * 119.67159 * 179.97438 * 23 22 21 37 37 H 1.08999 * 109.58232 * 173.64495 * 24 14 13 38 38 H 1.08998 * 109.58264 * 294.06838 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6810 0.8915 11 6 4.0231 -2.6363 -0.0020 12 6 5.5530 -2.6369 0.0321 13 6 6.0877 -1.9319 -1.2238 14 7 5.4867 -0.5934 -1.2999 15 6 6.2627 0.5020 -1.4194 16 8 5.7523 1.5947 -1.5737 17 7 7.6046 0.3855 -1.3733 18 6 8.4063 1.5326 -1.3488 19 6 9.6630 1.5294 -1.9494 20 6 10.4173 2.6901 -1.9030 21 6 9.9070 3.8018 -1.2584 22 7 8.7152 3.7708 -0.6951 23 6 7.9631 2.6885 -0.7202 24 6 4.0232 -0.4722 -1.2495 25 1 -0.4851 0.8400 0.0004 26 1 3.6401 -3.1593 0.8743 27 1 3.6799 -3.1414 -0.9049 28 1 5.8973 -2.1104 0.9222 29 1 5.9161 -3.6644 0.0534 30 1 5.8173 -2.5049 -2.1108 31 1 7.1722 -1.8425 -1.1606 32 1 8.0148 -0.4933 -1.3570 33 1 10.0382 0.6449 -2.4425 34 1 11.3945 2.7251 -2.3613 35 1 10.4926 4.7082 -1.2160 36 1 6.9922 2.7011 -0.2473 37 1 3.7452 0.5807 -1.2032 38 1 3.5880 -0.9285 -2.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596446138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:31 Heat of formation + Delta-G solvation = 20.975266 kcal Electronic energy + Delta-G solvation = -21470.005658 eV Core-core repulsion = 18312.901101 eV Total energy + Delta-G solvation = -3157.104556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95542 -39.58560 -37.33638 -35.13683 -33.47445 -32.20630 -32.06135 -30.65006 -29.63558 -25.33678 -25.11070 -23.80231 -22.93405 -22.16396 -20.36536 -19.21266 -18.38183 -17.38433 -16.94738 -16.65973 -16.19434 -15.37520 -14.92029 -14.41299 -14.11185 -14.06325 -13.84388 -13.77864 -13.23485 -13.11183 -12.95357 -12.68307 -12.38683 -12.25004 -11.43321 -11.14209 -10.93969 -10.70523 -10.47387 -10.17347 -10.00900 -9.80549 -9.73547 -9.51507 -9.31522 -9.15707 -8.64326 -8.42614 -8.06344 -6.13036 -4.15279 1.04671 1.16149 2.62044 3.22964 3.37981 3.45776 3.55926 3.81661 3.86400 4.40375 4.55742 4.67838 4.74625 4.91409 4.94466 5.17753 5.19274 5.22935 5.31417 5.53599 5.68374 5.87530 5.92744 5.97119 6.01344 6.07208 6.18422 6.31036 6.45107 6.49794 6.63162 6.72555 6.78444 6.97666 7.13091 7.38202 7.68027 7.93743 7.98055 8.43900 8.62867 8.89770 9.48169 10.98784 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.005678 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.719362 B = 4930.124505 C = 5938.231719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.004 3.996 10 H 0.031 0.969 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.112 3.888 14 N -0.616 5.616 15 C 0.699 3.301 16 O -0.572 6.572 17 N -0.687 5.687 18 C 0.128 3.872 19 C -0.114 4.114 20 C -0.152 4.152 21 C 0.068 3.932 22 N -0.465 5.465 23 C 0.100 3.900 24 C 0.117 3.883 25 H 0.266 0.734 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.405 0.595 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.329 -2.143 -3.550 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.096 0.904 9 C -0.015 4.015 10 H 0.049 0.951 11 C -0.138 4.138 12 C -0.174 4.174 13 C -0.011 4.011 14 N -0.352 5.352 15 C 0.401 3.599 16 O -0.448 6.448 17 N -0.338 5.338 18 C 0.030 3.970 19 C -0.143 4.143 20 C -0.173 4.173 21 C -0.090 4.090 22 N -0.173 5.173 23 C -0.060 4.060 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.172 0.828 36 H 0.184 0.816 37 H 0.099 0.901 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.355 -0.561 -3.230 20.617 hybrid contribution 0.947 -0.358 -0.572 1.162 sum 21.302 -0.919 -3.801 21.658 Atomic orbital electron populations 1.69883 1.06291 1.27243 1.49744 1.25045 0.94764 0.99112 0.93979 0.87000 0.79645 0.83426 0.79090 1.19774 1.22192 1.18912 1.20933 0.88074 0.94665 1.51922 0.90391 1.19515 0.96895 0.92191 0.92946 0.95085 1.21434 0.91776 0.98882 1.01699 1.22068 0.98833 0.99499 0.97039 1.21739 0.96028 0.83829 0.99517 1.47769 1.08260 1.04248 1.74918 1.15954 0.80475 0.85201 0.78287 1.90951 1.72461 1.25389 1.56048 1.42872 1.05218 1.07843 1.77883 1.18630 0.91704 0.89090 0.97580 1.21300 0.94241 0.99595 0.99144 1.21925 1.01002 0.93417 1.00932 1.22729 0.92403 0.98272 0.95562 1.67749 1.05346 1.27286 1.16937 1.23041 0.99915 0.87481 0.95604 1.22645 0.73780 1.02734 1.01173 0.92429 0.92056 0.92391 0.91882 0.91511 0.91022 0.91789 0.75596 0.84710 0.84620 0.82848 0.81597 0.90123 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.13 5.45 -17.82 -0.10 2.04 16 3 Si 0.88 23.16 24.32 -169.99 -4.13 19.02 16 4 H -0.27 -7.27 6.92 56.52 0.39 -6.88 16 5 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 6 H -0.26 -6.91 6.53 56.52 0.37 -6.54 16 7 C -0.52 -14.10 9.15 -34.44 -0.31 -14.42 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 10 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 11 C -0.10 -1.78 5.11 -26.69 -0.14 -1.92 16 12 C -0.14 -1.83 6.10 -26.39 -0.16 -1.99 16 13 C 0.11 1.43 6.45 -3.48 -0.02 1.40 16 14 N -0.62 -10.93 2.97 -178.23 -0.53 -11.46 16 15 C 0.70 12.80 8.02 -86.92 -0.70 12.11 16 16 O -0.57 -12.95 13.54 5.29 0.07 -12.88 16 17 N -0.69 -9.37 5.27 -14.12 -0.07 -9.44 16 18 C 0.13 1.78 6.30 -83.53 -0.53 1.25 16 19 C -0.11 -1.18 10.11 -39.09 -0.40 -1.58 16 20 C -0.15 -1.44 10.10 -39.47 -0.40 -1.84 16 21 C 0.07 0.78 11.18 -17.53 -0.20 0.58 16 22 N -0.46 -7.13 10.35 -13.09 -0.14 -7.26 16 23 C 0.10 1.64 9.83 -17.33 -0.17 1.47 16 24 C 0.12 2.56 5.09 -3.71 -0.02 2.54 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.58 5.58 -51.93 -0.29 0.30 16 32 H 0.41 4.00 6.29 -40.82 -0.26 3.75 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.17 3.14 6.45 -52.49 -0.34 2.80 16 37 H 0.08 2.01 2.35 -51.93 -0.12 1.89 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -34.05 302.87 -7.55 -41.60 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.78 Total: 2.73 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -3.30 Total: -0.43 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.03 Total: -54.61 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.13 Total: 19.02 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.05 -7.55 -41.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596446138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.576 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds