Wall clock time and date at job start Mon Mar 30 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48502 * 109.46987 * 269.99626 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99762 * 3 2 1 6 6 H 1.48503 * 109.47324 * 149.99999 * 3 2 1 7 7 C 1.37878 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00058 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.49788 * 60.06059 * 9 7 2 11 11 C 1.53039 * 109.52384 * 180.14376 * 9 7 2 12 12 C 1.53032 * 109.53791 * 181.33197 * 11 9 7 13 13 C 1.53628 * 109.24243 * 298.50995 * 12 11 9 14 14 N 1.46924 * 108.54283 * 54.85698 * 13 12 11 15 15 C 1.34780 * 120.63277 * 126.36946 * 14 13 12 16 16 O 1.21586 * 119.99989 * 174.95154 * 15 14 13 17 17 N 1.34769 * 119.99601 * 355.22397 * 15 14 13 18 18 C 1.39975 * 120.00006 * 187.03921 * 17 15 14 19 19 C 1.39279 * 120.48835 * 212.39775 * 18 17 15 20 20 C 1.38511 * 118.35825 * 179.77806 * 19 18 17 21 21 C 1.38270 * 119.23466 * 0.49787 * 20 19 18 22 22 N 1.31853 * 120.91970 * 359.74239 * 21 20 19 23 23 C 1.31818 * 121.79743 * 0.02562 * 22 21 20 24 24 C 1.46936 * 118.73871 * 306.09738 * 14 13 12 25 25 H 0.97003 * 120.00440 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.45947 * 301.35322 * 11 9 7 27 27 H 1.08999 * 109.45811 * 61.31905 * 11 9 7 28 28 H 1.08991 * 109.50143 * 58.58794 * 12 11 9 29 29 H 1.09001 * 109.49703 * 178.68815 * 12 11 9 30 30 H 1.09003 * 109.74009 * 295.12270 * 13 12 11 31 31 H 1.08997 * 109.66677 * 174.55018 * 13 12 11 32 32 H 0.96999 * 120.00306 * 7.03515 * 17 15 14 33 33 H 1.07992 * 120.81722 * 0.02562 * 19 18 17 34 34 H 1.07991 * 120.37863 * 180.23371 * 20 19 18 35 35 H 1.07996 * 119.53540 * 179.76437 * 21 20 19 36 36 H 1.08001 * 119.67159 * 179.97438 * 23 22 21 37 37 H 1.08999 * 109.58232 * 173.64495 * 24 14 13 38 38 H 1.08998 * 109.58264 * 294.06838 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8750 -0.6810 0.8915 11 6 4.0231 -2.6363 -0.0020 12 6 5.5530 -2.6369 0.0321 13 6 6.0877 -1.9319 -1.2238 14 7 5.4867 -0.5934 -1.2999 15 6 6.2627 0.5020 -1.4194 16 8 5.7523 1.5947 -1.5737 17 7 7.6046 0.3855 -1.3733 18 6 8.4063 1.5326 -1.3488 19 6 9.6630 1.5294 -1.9494 20 6 10.4173 2.6901 -1.9030 21 6 9.9070 3.8018 -1.2584 22 7 8.7152 3.7708 -0.6951 23 6 7.9631 2.6885 -0.7202 24 6 4.0232 -0.4722 -1.2495 25 1 -0.4851 0.8400 0.0004 26 1 3.6401 -3.1593 0.8743 27 1 3.6799 -3.1414 -0.9049 28 1 5.8973 -2.1104 0.9222 29 1 5.9161 -3.6644 0.0534 30 1 5.8173 -2.5049 -2.1108 31 1 7.1722 -1.8425 -1.1606 32 1 8.0148 -0.4933 -1.3570 33 1 10.0382 0.6449 -2.4425 34 1 11.3945 2.7251 -2.3613 35 1 10.4926 4.7082 -1.2160 36 1 6.9922 2.7011 -0.2473 37 1 3.7452 0.5807 -1.2032 38 1 3.5880 -0.9285 -2.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596446138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:31 Heat of formation + Delta-G solvation = -4.247901 kcal Electronic energy + Delta-G solvation = -21471.099416 eV Core-core repulsion = 18312.901101 eV Total energy + Delta-G solvation = -3158.198315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.15117 -40.72182 -38.75907 -36.40141 -35.29851 -33.73165 -33.08939 -32.23380 -30.74267 -27.08587 -26.55718 -24.77853 -24.02799 -23.62467 -21.78883 -20.63516 -19.62703 -18.97638 -18.38810 -17.88491 -17.26487 -16.95554 -16.25729 -16.05379 -15.55734 -15.38599 -15.02034 -14.89751 -14.84154 -14.53164 -14.11400 -14.06189 -13.80474 -13.32699 -13.16495 -12.94945 -12.36356 -12.19715 -12.08936 -11.88050 -11.61662 -11.47009 -11.09560 -11.04365 -10.83068 -10.66744 -10.45641 -9.77761 -9.24291 -8.41576 -6.42796 0.08366 0.28341 1.20503 1.27193 1.37796 1.39325 1.90480 2.17912 2.69671 2.86316 2.96671 3.60729 3.86043 3.89330 3.91498 4.02589 4.10574 4.13753 4.36017 4.41218 4.49067 4.58883 4.66868 4.73140 4.82991 4.94854 4.99852 5.11491 5.11730 5.20057 5.23870 5.35208 5.51667 5.59292 5.66591 5.77936 5.83420 6.24630 6.65992 6.75573 7.00734 7.23015 7.30406 8.74469 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.005678 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.719362 B = 4930.124505 C = 5938.231719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.032 3.968 3 Si 0.934 3.066 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.003 3.997 10 H 0.013 0.987 11 C -0.098 4.098 12 C -0.127 4.127 13 C 0.105 3.895 14 N -0.619 5.619 15 C 0.694 3.306 16 O -0.624 6.624 17 N -0.664 5.664 18 C 0.109 3.891 19 C -0.097 4.097 20 C -0.134 4.134 21 C 0.062 3.938 22 N -0.502 5.502 23 C 0.063 3.937 24 C 0.125 3.875 25 H 0.267 0.733 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.426 0.574 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.122 0.878 37 H 0.046 0.954 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.222 -3.791 -4.820 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.167 4.167 3 Si 0.765 3.235 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.548 4.548 8 H 0.072 0.928 9 C -0.016 4.016 10 H 0.031 0.969 11 C -0.136 4.136 12 C -0.165 4.165 13 C -0.016 4.016 14 N -0.354 5.354 15 C 0.396 3.604 16 O -0.505 6.505 17 N -0.317 5.317 18 C 0.011 3.989 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.097 4.097 22 N -0.211 5.211 23 C -0.096 4.096 24 C 0.002 3.998 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.268 0.732 33 H 0.196 0.804 34 H 0.202 0.798 35 H 0.201 0.799 36 H 0.140 0.860 37 H 0.064 0.936 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 25.308 -2.267 -4.484 25.802 hybrid contribution -0.436 0.157 -0.199 0.505 sum 24.872 -2.109 -4.683 25.397 Atomic orbital electron populations 1.69970 1.07425 1.27823 1.52382 1.25566 0.95106 1.01378 0.94608 0.86134 0.78237 0.81069 0.78107 1.21053 1.22281 1.19467 1.21326 0.90872 0.93218 1.49399 0.92761 1.19453 0.93837 0.95772 0.92588 0.96898 1.21375 0.95436 0.94970 1.01799 1.22021 0.94962 1.02267 0.97246 1.22168 0.98350 0.81050 1.00004 1.47632 1.06541 1.06336 1.74895 1.16143 0.81930 0.84364 0.77970 1.90924 1.73837 1.27546 1.58162 1.42469 1.03264 1.09006 1.76929 1.18740 0.93171 0.88221 0.98733 1.21786 0.92020 1.01446 0.97248 1.22461 1.02326 0.91838 0.98774 1.23392 0.91196 1.00455 0.94610 1.67633 1.07263 1.27519 1.18727 1.22555 0.99290 0.89617 0.98141 1.22078 0.77032 1.00243 1.00404 0.92352 0.92509 0.91883 0.92438 0.87040 0.88939 0.87321 0.73158 0.80433 0.79788 0.79906 0.86002 0.93564 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 2 C 0.03 1.93 5.45 84.66 0.46 2.40 16 3 Si 0.93 51.00 24.32 68.60 1.67 52.67 16 4 H -0.28 -15.85 6.92 99.48 0.69 -15.16 16 5 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 6 H -0.27 -14.70 6.53 99.48 0.65 -14.05 16 7 C -0.51 -28.65 9.15 25.60 0.23 -28.42 16 8 H 0.05 3.26 7.99 -2.91 -0.02 3.23 16 9 C 0.00 0.15 1.84 -11.46 -0.02 0.13 16 10 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 11 C -0.10 -3.34 5.11 30.62 0.16 -3.18 16 12 C -0.13 -2.93 6.10 30.82 0.19 -2.75 16 13 C 0.11 2.24 6.45 86.51 0.56 2.80 16 14 N -0.62 -21.18 2.97 -836.05 -2.48 -23.66 16 15 C 0.69 25.16 8.02 179.06 1.44 26.59 16 16 O -0.62 -29.49 13.54 -3.99 -0.05 -29.55 16 17 N -0.66 -16.57 5.27 -316.86 -1.67 -18.24 16 18 C 0.11 2.83 6.30 38.24 0.24 3.07 16 19 C -0.10 -1.54 10.11 22.59 0.23 -1.31 16 20 C -0.13 -1.85 10.10 22.34 0.23 -1.62 16 21 C 0.06 1.24 11.18 84.70 0.95 2.18 16 22 N -0.50 -15.44 10.35 -195.33 -2.02 -17.47 16 23 C 0.06 2.12 9.83 84.84 0.83 2.96 16 24 C 0.13 5.54 5.09 86.36 0.44 5.98 16 25 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.35 5.58 -2.39 -0.01 1.34 16 32 H 0.43 6.48 6.29 -92.71 -0.58 5.90 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.18 0.82 8.06 -2.92 -0.02 0.80 16 35 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.12 5.09 6.45 -2.91 -0.02 5.07 16 37 H 0.05 2.39 2.35 -2.39 -0.01 2.38 16 38 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -82.85 302.87 2.10 -80.75 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.43 Total: 5.51 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.93 Total: 8.82 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -5.87 Total: -118.20 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.05 Total: -29.55 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.67 Total: 52.67 kcal Total: -82.85 2.10 -80.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596446138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.503 kcal (2) G-P(sol) polarization free energy of solvation -82.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds