Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47149 * 269.99769 * 3 2 1 5 5 H 1.48509 * 109.47136 * 29.99848 * 3 2 1 6 6 H 1.48504 * 109.47551 * 149.99539 * 3 2 1 7 7 C 1.37880 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.52322 * 300.07205 * 9 7 2 11 11 C 1.53042 * 109.49508 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.53651 * 178.68050 * 11 9 7 13 13 C 1.53190 * 109.31360 * 61.36151 * 12 11 9 14 14 N 1.46922 * 108.77986 * 305.36558 * 13 12 11 15 15 C 1.34771 * 120.63210 * 233.58766 * 14 13 12 16 16 O 1.21589 * 120.00081 * 187.21326 * 15 14 13 17 17 N 1.34780 * 120.00145 * 7.21231 * 15 14 13 18 18 C 1.39966 * 120.00059 * 189.14921 * 17 15 14 19 19 C 1.39271 * 120.49015 * 157.13841 * 18 17 15 20 20 C 1.38506 * 118.36845 * 180.02562 * 19 18 17 21 21 C 1.38278 * 119.23011 * 359.97193 * 20 19 18 22 22 N 1.31857 * 120.91878 * 0.02562 * 21 20 19 23 23 C 1.31818 * 121.79594 * 0.02562 * 22 21 20 24 24 C 1.46926 * 118.73612 * 53.85839 * 14 13 12 25 25 H 0.97001 * 119.99439 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46438 * 58.66183 * 11 9 7 27 27 H 1.09001 * 109.44844 * 298.69093 * 11 9 7 28 28 H 1.09004 * 109.49752 * 301.41024 * 12 11 9 29 29 H 1.09001 * 109.50039 * 181.31529 * 12 11 9 30 30 H 1.09009 * 109.58752 * 185.57627 * 13 12 11 31 31 H 1.08999 * 109.70551 * 65.22683 * 13 12 11 32 32 H 0.97002 * 119.99569 * 9.15447 * 17 15 14 33 33 H 1.07998 * 120.81589 * 0.02562 * 19 18 17 34 34 H 1.08000 * 120.38786 * 180.25322 * 20 19 18 35 35 H 1.07998 * 119.53927 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.66875 * 180.02562 * 23 22 21 37 37 H 1.08993 * 109.58757 * 65.92800 * 24 14 13 38 38 H 1.09002 * 109.58371 * 186.35944 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5570 0.8894 11 6 2.2450 -3.6628 0.0005 12 6 1.4810 -4.9884 0.0337 13 6 0.6056 -5.1002 -1.2184 14 7 -0.2530 -3.9110 -1.3030 15 6 -1.5893 -4.0360 -1.4254 16 8 -2.2761 -3.0530 -1.6259 17 7 -2.1644 -5.2509 -1.3254 18 6 -3.5186 -5.4121 -1.6403 19 6 -4.0157 -6.6612 -2.0040 20 6 -5.3627 -6.7707 -2.3072 21 6 -6.1638 -5.6456 -2.2389 22 7 -5.6622 -4.4769 -1.8910 23 6 -4.3861 -4.3289 -1.5956 24 6 0.3735 -2.5828 -1.2577 25 1 -0.4849 0.8401 0.0004 26 1 2.8873 -3.5918 0.8783 27 1 2.8559 -3.6183 -0.9011 28 1 0.8508 -5.0230 0.9225 29 1 2.1896 -5.8163 0.0573 30 1 -0.0143 -5.9945 -1.1523 31 1 1.2375 -5.1585 -2.1046 32 1 -1.6398 -6.0134 -1.0352 33 1 -3.3667 -7.5233 -2.0486 34 1 -5.7835 -7.7245 -2.5892 35 1 -7.2149 -5.7254 -2.4739 36 1 -4.0119 -3.3556 -1.3144 37 1 0.9888 -2.4385 -2.1457 38 1 -0.3995 -1.8153 -1.2174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596446139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = 17.593241 kcal Electronic energy + Delta-G solvation = -21273.599051 eV Core-core repulsion = 18116.347839 eV Total energy + Delta-G solvation = -3157.251212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76727 -39.31294 -37.08781 -34.92122 -33.42338 -31.99835 -31.94307 -29.99032 -29.35932 -25.17754 -24.86812 -23.63180 -22.79046 -21.93702 -20.33007 -19.07030 -18.04368 -17.19621 -16.80860 -16.24786 -15.72686 -15.26941 -14.58628 -14.36959 -14.01224 -13.86995 -13.75190 -13.46848 -13.05552 -12.92825 -12.65744 -12.35294 -12.30841 -11.98034 -11.07074 -10.95439 -10.88643 -10.57076 -10.47147 -10.29470 -9.97984 -9.67548 -9.48732 -9.25667 -9.17326 -9.02649 -8.49168 -8.21039 -7.74895 -6.03445 -4.12285 1.26182 1.33613 2.85801 3.29966 3.37559 3.39260 3.48185 4.00272 4.11149 4.41101 4.78176 4.81745 4.92109 5.07535 5.12926 5.26963 5.35457 5.40701 5.48544 5.73042 5.87065 6.03895 6.09417 6.20796 6.24095 6.35878 6.48686 6.54915 6.70795 6.88403 6.92680 7.04768 7.19602 7.27439 7.64649 7.82161 7.97243 8.18363 8.27852 8.34054 8.88158 8.93502 9.53838 11.02112 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.004710 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.212091 B = 5943.639250 C = 6935.202853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.112 3.888 14 N -0.613 5.613 15 C 0.699 3.301 16 O -0.561 6.561 17 N -0.685 5.685 18 C 0.129 3.871 19 C -0.125 4.125 20 C -0.153 4.153 21 C 0.058 3.942 22 N -0.464 5.464 23 C 0.078 3.922 24 C 0.127 3.873 25 H 0.265 0.735 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.198 0.802 37 H 0.044 0.956 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -15.904 -3.220 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.012 4.012 14 N -0.348 5.348 15 C 0.402 3.598 16 O -0.438 6.438 17 N -0.334 5.334 18 C 0.029 3.971 19 C -0.154 4.154 20 C -0.173 4.173 21 C -0.099 4.099 22 N -0.173 5.173 23 C -0.082 4.082 24 C 0.006 3.994 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.242 0.758 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.214 0.786 37 H 0.063 0.937 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.213 -14.263 -3.337 15.548 hybrid contribution 1.378 -0.518 0.055 1.473 sum -3.835 -14.781 -3.283 15.619 Atomic orbital electron populations 1.69872 1.05750 1.27013 1.49052 1.25053 0.94892 0.99307 0.94711 0.86582 0.79776 0.83420 0.78158 1.20600 1.21165 1.19946 1.21057 0.92920 0.90034 1.52138 0.92309 1.19081 0.92626 0.92357 0.93915 0.95207 1.21622 0.98574 0.93879 1.00736 1.21969 0.98698 0.99421 0.97200 1.21589 0.93450 0.87047 0.99092 1.47898 1.02902 1.09571 1.74477 1.15974 0.82948 0.82382 0.78517 1.90760 1.60787 1.36547 1.55672 1.42913 1.08570 1.11595 1.70293 1.18826 0.84208 0.95599 0.98472 1.21199 0.96488 0.96378 1.01327 1.21859 0.93642 1.00259 1.01569 1.22718 1.00295 0.88345 0.98581 1.67873 1.14127 1.25603 1.09676 1.24216 0.87040 1.00936 0.95984 1.22427 0.98458 0.79876 0.98595 0.92525 0.92867 0.93069 0.92063 0.92069 0.92227 0.91546 0.75817 0.85007 0.84936 0.83215 0.78552 0.93736 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 11.41 55.43 0.63 -24.54 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.78 8.56 -34.44 -0.29 -14.08 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.94 2.26 -91.43 -0.21 0.73 16 10 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 11 C -0.11 -2.07 5.10 -26.69 -0.14 -2.21 16 12 C -0.13 -1.98 6.08 -26.61 -0.16 -2.14 16 13 C 0.11 1.59 6.42 -3.71 -0.02 1.56 16 14 N -0.61 -11.64 2.97 -178.23 -0.53 -12.17 16 15 C 0.70 13.61 8.20 -86.92 -0.71 12.90 16 16 O -0.56 -13.15 12.56 5.29 0.07 -13.08 16 17 N -0.69 -10.18 5.23 -14.12 -0.07 -10.26 16 18 C 0.13 1.93 6.52 -83.53 -0.54 1.38 16 19 C -0.12 -1.43 10.08 -39.10 -0.39 -1.82 16 20 C -0.15 -1.61 10.11 -39.47 -0.40 -2.01 16 21 C 0.06 0.73 11.18 -17.53 -0.20 0.54 16 22 N -0.46 -7.64 10.35 -13.09 -0.14 -7.77 16 23 C 0.08 1.38 10.07 -17.33 -0.17 1.20 16 24 C 0.13 2.95 5.41 -3.49 -0.02 2.93 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.64 5.64 -51.92 -0.29 0.34 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.40 4.60 6.38 -40.82 -0.26 4.34 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.20 4.06 5.20 -52.60 -0.27 3.79 16 37 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 3.41 5.20 -51.93 -0.27 3.14 16 LS Contribution 308.32 15.07 4.65 4.65 Total: -1.00 -31.17 308.32 -8.64 -39.80 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.87 Total: 6.82 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.36 Total: 0.62 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.11 Total: -54.75 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.17 -8.64 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596446139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.398 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds