Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47149 * 269.99769 * 3 2 1 5 5 H 1.48509 * 109.47136 * 29.99848 * 3 2 1 6 6 H 1.48504 * 109.47551 * 149.99539 * 3 2 1 7 7 C 1.37880 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99817 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.52322 * 300.07205 * 9 7 2 11 11 C 1.53042 * 109.49508 * 179.97438 * 9 7 2 12 12 C 1.53040 * 109.53651 * 178.68050 * 11 9 7 13 13 C 1.53190 * 109.31360 * 61.36151 * 12 11 9 14 14 N 1.46922 * 108.77986 * 305.36558 * 13 12 11 15 15 C 1.34771 * 120.63210 * 233.58766 * 14 13 12 16 16 O 1.21589 * 120.00081 * 187.21326 * 15 14 13 17 17 N 1.34780 * 120.00145 * 7.21231 * 15 14 13 18 18 C 1.39966 * 120.00059 * 189.14921 * 17 15 14 19 19 C 1.39271 * 120.49015 * 157.13841 * 18 17 15 20 20 C 1.38506 * 118.36845 * 180.02562 * 19 18 17 21 21 C 1.38278 * 119.23011 * 359.97193 * 20 19 18 22 22 N 1.31857 * 120.91878 * 0.02562 * 21 20 19 23 23 C 1.31818 * 121.79594 * 0.02562 * 22 21 20 24 24 C 1.46926 * 118.73612 * 53.85839 * 14 13 12 25 25 H 0.97001 * 119.99439 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46438 * 58.66183 * 11 9 7 27 27 H 1.09001 * 109.44844 * 298.69093 * 11 9 7 28 28 H 1.09004 * 109.49752 * 301.41024 * 12 11 9 29 29 H 1.09001 * 109.50039 * 181.31529 * 12 11 9 30 30 H 1.09009 * 109.58752 * 185.57627 * 13 12 11 31 31 H 1.08999 * 109.70551 * 65.22683 * 13 12 11 32 32 H 0.97002 * 119.99569 * 9.15447 * 17 15 14 33 33 H 1.07998 * 120.81589 * 0.02562 * 19 18 17 34 34 H 1.08000 * 120.38786 * 180.25322 * 20 19 18 35 35 H 1.07998 * 119.53927 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.66875 * 180.02562 * 23 22 21 37 37 H 1.08993 * 109.58757 * 65.92800 * 24 14 13 38 38 H 1.09002 * 109.58371 * 186.35944 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5570 0.8894 11 6 2.2450 -3.6628 0.0005 12 6 1.4810 -4.9884 0.0337 13 6 0.6056 -5.1002 -1.2184 14 7 -0.2530 -3.9110 -1.3030 15 6 -1.5893 -4.0360 -1.4254 16 8 -2.2761 -3.0530 -1.6259 17 7 -2.1644 -5.2509 -1.3254 18 6 -3.5186 -5.4121 -1.6403 19 6 -4.0157 -6.6612 -2.0040 20 6 -5.3627 -6.7707 -2.3072 21 6 -6.1638 -5.6456 -2.2389 22 7 -5.6622 -4.4769 -1.8910 23 6 -4.3861 -4.3289 -1.5956 24 6 0.3735 -2.5828 -1.2577 25 1 -0.4849 0.8401 0.0004 26 1 2.8873 -3.5918 0.8783 27 1 2.8559 -3.6183 -0.9011 28 1 0.8508 -5.0230 0.9225 29 1 2.1896 -5.8163 0.0573 30 1 -0.0143 -5.9945 -1.1523 31 1 1.2375 -5.1585 -2.1046 32 1 -1.6398 -6.0134 -1.0352 33 1 -3.3667 -7.5233 -2.0486 34 1 -5.7835 -7.7245 -2.5892 35 1 -7.2149 -5.7254 -2.4739 36 1 -4.0119 -3.3556 -1.3144 37 1 0.9888 -2.4385 -2.1457 38 1 -0.3995 -1.8153 -1.2174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596446139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -3.566574 kcal Electronic energy + Delta-G solvation = -21274.516610 eV Core-core repulsion = 18116.347839 eV Total energy + Delta-G solvation = -3158.168770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06066 -40.56060 -38.59026 -36.29835 -35.24128 -33.56337 -32.99571 -31.58631 -30.61332 -27.07789 -26.31395 -24.72161 -23.99390 -23.44832 -21.81900 -20.54520 -19.41370 -18.58516 -18.12395 -17.82574 -16.91417 -16.82911 -16.39260 -15.83077 -15.30524 -15.22428 -14.95035 -14.75968 -14.50198 -14.26592 -14.03426 -13.93579 -13.61032 -13.27296 -12.89278 -12.66977 -12.33985 -12.23930 -12.13613 -11.84766 -11.64386 -11.13006 -10.96810 -10.85881 -10.56391 -10.52749 -10.34850 -9.63785 -9.07927 -8.11387 -6.27998 0.19554 0.35096 1.40423 1.41743 1.51774 1.53551 2.03470 2.41769 2.81922 2.95091 3.18407 3.75594 3.93961 3.96079 3.99940 4.12732 4.17118 4.28784 4.45811 4.59332 4.69253 4.77248 4.77492 4.86533 5.09382 5.13157 5.17029 5.24988 5.28848 5.31034 5.32138 5.54787 5.60558 5.82979 5.91497 5.93147 6.07484 6.33600 6.84533 6.91810 7.10834 7.41923 7.46538 8.92018 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.004710 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.212091 B = 5943.639250 C = 6935.202853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.012 1.012 11 C -0.106 4.106 12 C -0.126 4.126 13 C 0.106 3.894 14 N -0.618 5.618 15 C 0.692 3.308 16 O -0.613 6.613 17 N -0.663 5.663 18 C 0.109 3.891 19 C -0.105 4.105 20 C -0.134 4.134 21 C 0.052 3.948 22 N -0.501 5.501 23 C 0.038 3.962 24 C 0.142 3.858 25 H 0.259 0.741 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.423 0.577 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.181 0.819 36 H 0.151 0.849 37 H 0.038 0.962 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -20.232 -4.029 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.006 0.994 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.016 4.016 14 N -0.352 5.352 15 C 0.394 3.606 16 O -0.493 6.493 17 N -0.313 5.313 18 C 0.010 3.990 19 C -0.134 4.134 20 C -0.154 4.154 21 C -0.106 4.106 22 N -0.210 5.210 23 C -0.120 4.120 24 C 0.019 3.981 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.265 0.735 33 H 0.195 0.805 34 H 0.201 0.799 35 H 0.198 0.802 36 H 0.168 0.832 37 H 0.057 0.943 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.512 -18.660 -4.131 19.637 hybrid contribution 1.042 0.726 0.282 1.300 sum -3.470 -17.935 -3.849 18.668 Atomic orbital electron populations 1.70082 1.07434 1.27259 1.50617 1.25882 0.95506 1.02904 0.94609 0.85586 0.78793 0.79220 0.78263 1.20099 1.21510 1.18588 1.21527 0.93336 0.91479 1.51058 0.91878 1.19012 0.93125 0.93868 0.92159 0.99364 1.21510 0.97645 0.94136 1.01037 1.21927 0.99088 0.98304 0.97103 1.21982 0.93691 0.86317 0.99604 1.47760 1.03389 1.09599 1.74479 1.16216 0.82889 0.83222 0.78282 1.90772 1.62027 1.38856 1.57619 1.42488 1.08746 1.10356 1.69748 1.18918 0.83555 0.96530 1.00003 1.21699 0.97486 0.95635 0.98561 1.22411 0.92886 1.01373 0.98701 1.23396 1.02139 0.87849 0.97218 1.67744 1.13781 1.28347 1.11148 1.23577 0.88576 1.00541 0.99317 1.21771 0.96857 0.81461 0.98001 0.93183 0.92928 0.92336 0.92874 0.87422 0.87817 0.89789 0.73505 0.80499 0.79901 0.80154 0.83189 0.94348 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 11.41 21.45 0.24 -55.67 16 2 C 0.01 0.59 5.30 84.65 0.45 1.04 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -29.17 8.56 25.60 0.22 -28.95 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.86 2.26 -11.32 -0.03 1.83 16 10 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 11 C -0.11 -3.86 5.10 30.62 0.16 -3.70 16 12 C -0.13 -3.33 6.08 30.67 0.19 -3.15 16 13 C 0.11 2.68 6.42 86.36 0.55 3.23 16 14 N -0.62 -23.80 2.97 -836.07 -2.48 -26.28 16 15 C 0.69 27.98 8.20 179.05 1.47 29.45 16 16 O -0.61 -31.43 12.56 -4.00 -0.05 -31.48 16 17 N -0.66 -19.07 5.23 -316.86 -1.66 -20.72 16 18 C 0.11 3.17 6.52 38.24 0.25 3.42 16 19 C -0.11 -1.95 10.08 22.58 0.23 -1.72 16 20 C -0.13 -2.17 10.11 22.34 0.23 -1.94 16 21 C 0.05 1.19 11.18 84.70 0.95 2.14 16 22 N -0.50 -16.91 10.35 -195.32 -2.02 -18.93 16 23 C 0.04 1.43 10.07 84.84 0.85 2.29 16 24 C 0.14 6.96 5.41 86.51 0.47 7.43 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.10 1.71 5.64 -2.38 -0.01 1.70 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.42 8.23 6.38 -92.71 -0.59 7.64 16 33 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.15 7.03 5.20 -4.65 -0.02 7.00 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 4.51 5.20 -2.39 -0.01 4.50 16 Total: -1.00 -78.45 308.32 2.52 -75.93 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.48 Total: 19.40 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.98 Total: 11.38 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -5.92 Total: -121.60 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.05 Total: -31.48 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -78.45 2.52 -75.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596446139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.361 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds