Wall clock time and date at job start Mon Mar 30 2020 02:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48496 * 109.46928 * 273.60464 * 3 2 1 5 5 H 1.48499 * 109.47010 * 33.60514 * 3 2 1 6 6 H 1.48505 * 109.46871 * 153.60845 * 3 2 1 7 7 C 1.38944 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00514 * 341.32280 * 7 2 1 9 9 N 1.37100 * 119.99988 * 161.32978 * 7 2 1 10 10 C 1.34784 * 119.99553 * 320.25539 * 9 7 2 11 11 O 1.21291 * 119.99729 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99693 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46981 * 180.02562 * 12 10 9 14 14 C 1.34947 * 126.03883 * 124.71583 * 13 12 10 15 15 C 1.35319 * 107.74537 * 179.83939 * 14 13 12 16 16 C 1.50700 * 126.03998 * 180.15696 * 15 14 13 17 17 C 1.53002 * 117.50194 * 188.90485 * 16 15 14 18 18 C 1.53001 * 117.49777 * 120.28212 * 16 15 14 19 19 C 1.39872 * 107.92101 * 0.42043 * 15 14 13 20 20 N 1.30841 * 108.20232 * 359.74129 * 19 15 14 21 21 C 1.46493 * 120.00578 * 140.25881 * 9 7 2 22 22 C 1.53002 * 117.49617 * 2.39254 * 21 9 7 23 23 C 1.53006 * 117.49689 * 293.73715 * 21 9 7 24 24 H 0.96998 * 120.00065 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46897 * 300.00074 * 12 10 9 26 26 H 1.08998 * 109.47253 * 59.99992 * 12 10 9 27 27 H 1.07992 * 126.12620 * 359.97438 * 14 13 12 28 28 H 1.09004 * 115.55339 * 334.61811 * 16 15 14 29 29 H 1.09000 * 117.49447 * 0.02562 * 17 16 15 30 30 H 1.08995 * 117.49829 * 145.02020 * 17 16 15 31 31 H 1.09001 * 117.50152 * 214.98265 * 18 16 15 32 32 H 1.08994 * 117.49791 * 359.97438 * 18 16 15 33 33 H 1.07995 * 125.89669 * 179.75325 * 19 15 14 34 34 H 1.08999 * 115.55656 * 148.05867 * 21 9 7 35 35 H 1.08999 * 117.49894 * 0.02562 * 22 21 9 36 36 H 1.09004 * 117.49817 * 145.01935 * 22 21 9 37 37 H 1.09007 * 117.49554 * 214.97532 * 23 21 9 38 38 H 1.08996 * 117.49551 * 359.96928 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4193 2.0905 -1.3973 5 1 1.4857 2.6295 0.7749 6 1 3.5818 1.4194 0.6224 7 6 2.0088 -1.2033 -0.0005 8 1 1.5116 -2.1141 0.2986 9 7 3.3257 -1.2344 -0.3806 10 6 3.7456 -0.4830 -1.4178 11 8 2.9585 0.2210 -2.0145 12 6 5.1930 -0.5176 -1.8360 13 7 5.3931 0.3791 -2.9772 14 6 6.2832 1.3911 -3.0451 15 6 6.1570 1.9704 -4.2615 16 6 6.9568 3.1404 -4.7737 17 6 6.5158 3.7736 -6.0948 18 6 7.7891 2.9272 -6.0396 19 6 5.1487 1.2952 -4.9572 20 7 4.6901 0.3411 -4.1883 21 6 4.2765 -2.0842 0.3404 22 6 3.7278 -2.9555 1.4721 23 6 4.5805 -1.7264 1.7966 24 1 -0.4850 0.8400 0.0004 25 1 5.8191 -0.1928 -1.0050 26 1 5.4649 -1.5341 -2.1202 27 1 6.9742 1.6845 -2.2688 28 1 7.3640 3.8022 -4.0092 29 1 5.6468 3.3441 -6.5934 30 1 6.6326 4.8522 -6.1997 31 1 8.7437 3.4489 -6.1083 32 1 7.7585 1.9405 -6.5018 33 1 4.8078 1.5221 -5.9565 34 1 5.0911 -2.4914 -0.2584 35 1 2.6594 -2.8967 1.6798 36 1 4.1818 -3.9357 1.6180 37 1 5.5951 -1.8985 2.1558 38 1 4.0734 -0.8584 2.2179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:37 Heat of formation + Delta-G solvation = 124.733895 kcal Electronic energy + Delta-G solvation = -21303.455501 eV Core-core repulsion = 18150.850257 eV Total energy + Delta-G solvation = -3152.605244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99739 -39.13906 -37.01083 -36.44865 -33.14038 -32.60916 -31.45699 -29.84331 -27.58336 -24.60629 -22.74572 -22.38555 -22.10498 -21.64785 -20.82147 -19.78672 -19.03283 -17.19613 -16.69402 -16.42100 -15.56631 -15.44887 -14.79115 -14.30852 -14.05974 -13.90032 -13.73473 -13.20852 -13.08421 -12.66436 -12.46793 -12.17219 -11.82376 -11.69555 -11.51621 -11.21987 -10.81254 -10.75274 -10.42987 -10.39822 -10.12856 -10.11262 -10.01526 -9.71109 -9.23481 -8.57321 -8.52214 -7.92776 -7.57824 -6.23193 -4.00848 2.19481 2.79040 3.01393 3.17784 3.39367 3.64821 3.70499 4.06248 4.18849 4.38696 4.54868 4.66019 4.94878 4.97184 5.02586 5.11437 5.14473 5.26817 5.32001 5.38308 5.43992 5.48040 5.49053 5.62557 5.65545 5.88629 5.91647 6.06469 6.12261 6.16572 6.21724 6.37058 6.55639 6.76383 6.94231 7.25749 7.77123 7.86962 8.08553 8.66876 8.81110 9.35336 9.68090 10.80337 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.005520 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.591586 B = 5071.141060 C = 5698.448531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.091 3.909 3 Si 0.919 3.081 4 H -0.250 1.250 5 H -0.312 1.312 6 H -0.286 1.286 7 C -0.348 4.348 8 H 0.099 0.901 9 N -0.431 5.431 10 C 0.430 3.570 11 O -0.509 6.509 12 C 0.119 3.881 13 N -0.349 5.349 14 C 0.054 3.946 15 C -0.214 4.214 16 C -0.067 4.067 17 C -0.178 4.178 18 C -0.178 4.178 19 C 0.036 3.964 20 N -0.251 5.251 21 C 0.056 3.944 22 C -0.169 4.169 23 C -0.198 4.198 24 H 0.273 0.727 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.169 0.831 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.175 0.825 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.774 1.886 -3.979 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.119 4.119 3 Si 0.751 3.249 4 H -0.176 1.176 5 H -0.243 1.243 6 H -0.213 1.213 7 C -0.474 4.474 8 H 0.117 0.883 9 N -0.153 5.153 10 C 0.218 3.782 11 O -0.389 6.389 12 C -0.007 4.007 13 N -0.130 5.130 14 C -0.092 4.092 15 C -0.226 4.226 16 C -0.086 4.086 17 C -0.215 4.215 18 C -0.215 4.215 19 C -0.151 4.151 20 N -0.071 5.071 21 C -0.050 4.050 22 C -0.206 4.206 23 C -0.237 4.237 24 H 0.083 0.917 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.186 0.814 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.192 0.808 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.301 1.229 -4.055 15.877 hybrid contribution 0.945 1.447 0.217 1.742 sum 16.246 2.676 -3.837 16.906 Atomic orbital electron populations 1.69728 1.06818 1.28300 1.44899 1.25300 0.94977 0.99512 0.92071 0.86274 0.78439 0.82026 0.78150 1.17629 1.24280 1.21250 1.18768 0.83031 0.96051 1.49525 0.88341 1.43087 1.07968 1.39040 1.25218 1.20090 0.89173 0.86355 0.82538 1.90621 1.54302 1.40359 1.53629 1.21598 0.98784 0.94314 0.85964 1.48062 1.27348 1.25198 1.12382 1.22128 0.96385 0.91613 0.99047 1.19160 1.04685 1.03112 0.95626 1.20115 1.01017 0.96788 0.90697 1.22941 0.98714 0.98910 1.00908 1.22995 0.94993 1.01499 1.02062 1.23657 0.96267 0.95232 0.99978 1.77566 1.15798 1.22404 0.91338 1.21873 0.95780 0.99282 0.88062 1.23129 1.01752 0.93881 1.01845 1.23311 1.00065 1.00483 0.99868 0.91711 0.87252 0.87869 0.81417 0.87677 0.88699 0.88920 0.89101 0.88881 0.80808 0.87166 0.86985 0.89283 0.89364 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.58 13.96 55.50 0.77 -25.81 16 2 C 0.09 2.69 4.89 -17.47 -0.09 2.60 16 3 Si 0.92 24.99 24.58 -169.99 -4.18 20.81 16 4 H -0.25 -7.36 6.09 56.52 0.34 -7.02 16 5 H -0.31 -8.40 7.11 56.52 0.40 -8.00 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.35 -9.65 8.77 -14.93 -0.13 -9.78 16 8 H 0.10 2.83 6.95 -52.49 -0.36 2.47 16 9 N -0.43 -10.08 2.56 -107.73 -0.28 -10.35 16 10 C 0.43 10.17 5.91 -10.98 -0.06 10.11 16 11 O -0.51 -14.47 10.58 5.55 0.06 -14.41 16 12 C 0.12 2.08 5.62 -5.19 -0.03 2.05 16 13 N -0.35 -6.51 3.40 -62.55 -0.21 -6.73 16 14 C 0.05 0.85 11.36 -17.22 -0.20 0.65 16 15 C -0.21 -3.24 5.76 -105.05 -0.61 -3.85 16 16 C -0.07 -0.79 6.25 -91.77 -0.57 -1.36 16 17 C -0.18 -1.84 10.02 -26.73 -0.27 -2.11 16 18 C -0.18 -1.76 10.23 -26.73 -0.27 -2.03 16 19 C 0.04 0.61 11.35 -17.36 -0.20 0.41 16 20 N -0.25 -5.19 11.64 30.62 0.36 -4.83 16 21 C 0.06 0.98 5.85 -67.93 -0.40 0.58 16 22 C -0.17 -2.73 9.80 -26.69 -0.26 -2.99 16 23 C -0.20 -3.13 10.37 -26.69 -0.28 -3.41 16 24 H 0.27 7.98 8.31 -40.82 -0.34 7.64 16 25 H 0.11 1.54 8.03 -51.93 -0.42 1.12 16 26 H 0.10 1.53 7.57 -51.93 -0.39 1.14 16 27 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.00 6.97 -51.93 -0.36 0.64 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.17 2.45 7.19 -52.49 -0.38 2.08 16 34 H 0.11 1.52 6.99 -51.93 -0.36 1.16 16 35 H 0.11 2.12 6.48 -51.93 -0.34 1.78 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -36.12 316.76 -7.25 -43.37 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.19 Total: 2.29 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.36 Total: -9.12 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.64 Total: -47.72 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.06 Total: -14.41 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.18 Total: 20.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.12 -7.25 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.102 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds