Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48496 * 109.46928 * 273.60464 * 3 2 1 5 5 H 1.48499 * 109.47010 * 33.60514 * 3 2 1 6 6 H 1.48505 * 109.46871 * 153.60845 * 3 2 1 7 7 C 1.38944 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00514 * 341.32280 * 7 2 1 9 9 N 1.37100 * 119.99988 * 161.32978 * 7 2 1 10 10 C 1.34784 * 119.99553 * 320.25539 * 9 7 2 11 11 O 1.21291 * 119.99729 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99693 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46981 * 180.02562 * 12 10 9 14 14 C 1.34947 * 126.03883 * 124.71583 * 13 12 10 15 15 C 1.35319 * 107.74537 * 179.83939 * 14 13 12 16 16 C 1.50700 * 126.03998 * 180.15696 * 15 14 13 17 17 C 1.53002 * 117.50194 * 188.90485 * 16 15 14 18 18 C 1.53001 * 117.49777 * 120.28212 * 16 15 14 19 19 C 1.39872 * 107.92101 * 0.42043 * 15 14 13 20 20 N 1.30841 * 108.20232 * 359.74129 * 19 15 14 21 21 C 1.46493 * 120.00578 * 140.25881 * 9 7 2 22 22 C 1.53002 * 117.49617 * 2.39254 * 21 9 7 23 23 C 1.53006 * 117.49689 * 293.73715 * 21 9 7 24 24 H 0.96998 * 120.00065 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46897 * 300.00074 * 12 10 9 26 26 H 1.08998 * 109.47253 * 59.99992 * 12 10 9 27 27 H 1.07992 * 126.12620 * 359.97438 * 14 13 12 28 28 H 1.09004 * 115.55339 * 334.61811 * 16 15 14 29 29 H 1.09000 * 117.49447 * 0.02562 * 17 16 15 30 30 H 1.08995 * 117.49829 * 145.02020 * 17 16 15 31 31 H 1.09001 * 117.50152 * 214.98265 * 18 16 15 32 32 H 1.08994 * 117.49791 * 359.97438 * 18 16 15 33 33 H 1.07995 * 125.89669 * 179.75325 * 19 15 14 34 34 H 1.08999 * 115.55656 * 148.05867 * 21 9 7 35 35 H 1.08999 * 117.49894 * 0.02562 * 22 21 9 36 36 H 1.09004 * 117.49817 * 145.01935 * 22 21 9 37 37 H 1.09007 * 117.49554 * 214.97532 * 23 21 9 38 38 H 1.08996 * 117.49551 * 359.96928 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4193 2.0905 -1.3973 5 1 1.4857 2.6295 0.7749 6 1 3.5818 1.4194 0.6224 7 6 2.0088 -1.2033 -0.0005 8 1 1.5116 -2.1141 0.2986 9 7 3.3257 -1.2344 -0.3806 10 6 3.7456 -0.4830 -1.4178 11 8 2.9585 0.2210 -2.0145 12 6 5.1930 -0.5176 -1.8360 13 7 5.3931 0.3791 -2.9772 14 6 6.2832 1.3911 -3.0451 15 6 6.1570 1.9704 -4.2615 16 6 6.9568 3.1404 -4.7737 17 6 6.5158 3.7736 -6.0948 18 6 7.7891 2.9272 -6.0396 19 6 5.1487 1.2952 -4.9572 20 7 4.6901 0.3411 -4.1883 21 6 4.2765 -2.0842 0.3404 22 6 3.7278 -2.9555 1.4721 23 6 4.5805 -1.7264 1.7966 24 1 -0.4850 0.8400 0.0004 25 1 5.8191 -0.1928 -1.0050 26 1 5.4649 -1.5341 -2.1202 27 1 6.9742 1.6845 -2.2688 28 1 7.3640 3.8022 -4.0092 29 1 5.6468 3.3441 -6.5934 30 1 6.6326 4.8522 -6.1997 31 1 8.7437 3.4489 -6.1083 32 1 7.7585 1.9405 -6.5018 33 1 4.8078 1.5221 -5.9565 34 1 5.0911 -2.4914 -0.2584 35 1 2.6594 -2.8967 1.6798 36 1 4.1818 -3.9357 1.6180 37 1 5.5951 -1.8985 2.1558 38 1 4.0734 -0.8584 2.2179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = 100.182948 kcal Electronic energy + Delta-G solvation = -21304.520110 eV Core-core repulsion = 18150.850257 eV Total energy + Delta-G solvation = -3153.669853 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25310 -40.85413 -38.16014 -37.75527 -35.03256 -34.09126 -33.34555 -31.05947 -29.09220 -26.44076 -23.77402 -23.60630 -23.13876 -22.99936 -22.19535 -21.17792 -20.51179 -18.97345 -18.05144 -17.90025 -17.36667 -16.49176 -16.15317 -15.95983 -15.56187 -15.21711 -15.04040 -14.83786 -14.63800 -14.57102 -13.77527 -13.53759 -13.46759 -12.93278 -12.85529 -12.44221 -12.26791 -12.23678 -12.04686 -11.72947 -11.62488 -11.36310 -11.23237 -11.09654 -10.80331 -10.73917 -10.20483 -9.46232 -9.08530 -8.46818 -6.20789 0.96093 1.11962 1.22086 1.46315 1.57346 1.81217 1.83503 2.37384 2.54465 2.92505 3.20188 3.21935 3.53876 3.74990 3.95961 4.02158 4.04597 4.11040 4.12857 4.19939 4.28460 4.30753 4.34671 4.55903 4.78360 4.88863 4.90783 4.97118 5.08243 5.16591 5.23859 5.37540 5.42168 5.46935 5.62899 5.71265 5.79804 6.11999 6.68694 6.82131 6.83074 7.27297 7.77851 8.59997 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.005520 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.591586 B = 5071.141060 C = 5698.448531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.040 3.960 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.316 1.316 6 H -0.259 1.259 7 C -0.335 4.335 8 H 0.074 0.926 9 N -0.447 5.447 10 C 0.423 3.577 11 O -0.565 6.565 12 C 0.127 3.873 13 N -0.366 5.366 14 C 0.053 3.947 15 C -0.217 4.217 16 C -0.082 4.082 17 C -0.181 4.181 18 C -0.162 4.162 19 C 0.029 3.971 20 N -0.316 5.316 21 C 0.036 3.964 22 C -0.171 4.171 23 C -0.179 4.179 24 H 0.270 0.730 25 H 0.155 0.845 26 H 0.134 0.866 27 H 0.210 0.790 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.189 0.811 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.456 1.940 -3.488 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.164 4.164 3 Si 0.808 3.192 4 H -0.217 1.217 5 H -0.247 1.247 6 H -0.184 1.184 7 C -0.462 4.462 8 H 0.092 0.908 9 N -0.169 5.169 10 C 0.213 3.787 11 O -0.449 6.449 12 C 0.003 3.997 13 N -0.148 5.148 14 C -0.092 4.092 15 C -0.228 4.228 16 C -0.101 4.101 17 C -0.218 4.218 18 C -0.199 4.199 19 C -0.158 4.158 20 N -0.136 5.136 21 C -0.067 4.067 22 C -0.208 4.208 23 C -0.217 4.217 24 H 0.080 0.920 25 H 0.173 0.827 26 H 0.152 0.848 27 H 0.227 0.773 28 H 0.139 0.861 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.205 0.795 34 H 0.177 0.823 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.035 1.254 -3.529 20.382 hybrid contribution -0.464 1.333 -0.021 1.412 sum 19.571 2.588 -3.551 20.058 Atomic orbital electron populations 1.69826 1.08103 1.28502 1.48618 1.25947 0.95432 1.02173 0.92845 0.85333 0.78752 0.79327 0.75779 1.21654 1.24668 1.18377 1.18677 0.85602 0.94582 1.47350 0.90845 1.43293 1.07440 1.39960 1.26203 1.21262 0.91742 0.84363 0.81316 1.90584 1.56629 1.42585 1.55111 1.21710 0.94302 0.96501 0.87231 1.48179 1.28119 1.26471 1.12008 1.22876 0.95991 0.90229 1.00126 1.19580 1.04107 1.03624 0.95490 1.20226 1.01879 0.96269 0.91763 1.23035 0.98934 0.99956 0.99872 1.23026 0.95616 1.01269 0.99955 1.24075 0.96405 0.94774 1.00498 1.77472 1.18213 1.24820 0.93133 1.22367 0.95981 0.99244 0.89140 1.23165 1.00078 0.96298 1.01305 1.23365 1.02042 0.98726 0.97579 0.92046 0.82708 0.84805 0.77303 0.86084 0.89553 0.87332 0.86882 0.89527 0.79459 0.82300 0.90981 0.85165 0.84337 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.20 13.96 21.66 0.30 -58.90 16 2 C 0.04 2.43 4.89 84.92 0.41 2.85 16 3 Si 0.98 53.47 24.58 68.60 1.69 55.16 16 4 H -0.29 -17.50 6.09 99.48 0.61 -16.89 16 5 H -0.32 -17.06 7.11 99.48 0.71 -16.36 16 6 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.34 -19.07 8.77 84.04 0.74 -18.33 16 8 H 0.07 4.45 6.95 -2.91 -0.02 4.43 16 9 N -0.45 -20.42 2.56 -613.13 -1.57 -21.99 16 10 C 0.42 19.51 5.91 87.66 0.52 20.03 16 11 O -0.57 -32.72 10.58 -3.07 -0.03 -32.75 16 12 C 0.13 4.00 5.62 85.63 0.48 4.48 16 13 N -0.37 -12.86 3.40 -351.81 -1.20 -14.05 16 14 C 0.05 1.47 11.36 83.54 0.95 2.42 16 15 C -0.22 -6.13 5.76 -20.14 -0.12 -6.24 16 16 C -0.08 -1.70 6.25 -11.54 -0.07 -1.78 16 17 C -0.18 -3.34 10.02 30.60 0.31 -3.03 16 18 C -0.16 -2.69 10.23 30.60 0.31 -2.38 16 19 C 0.03 0.97 11.35 85.24 0.97 1.94 16 20 N -0.32 -13.03 11.64 -57.02 -0.66 -13.70 16 21 C 0.04 1.14 5.85 45.00 0.26 1.40 16 22 C -0.17 -5.08 9.80 30.62 0.30 -4.78 16 23 C -0.18 -4.90 10.37 30.62 0.32 -4.58 16 24 H 0.27 16.75 8.31 -92.71 -0.77 15.98 16 25 H 0.16 3.43 8.03 -2.39 -0.02 3.41 16 26 H 0.13 3.35 7.57 -2.39 -0.02 3.33 16 27 H 0.21 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 1.73 6.97 -2.39 -0.02 1.71 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.19 5.35 7.19 -2.91 -0.02 5.33 16 34 H 0.16 3.41 6.99 -2.39 -0.02 3.39 16 35 H 0.07 2.75 6.48 -2.39 -0.02 2.73 16 36 H 0.13 2.78 8.14 -2.38 -0.02 2.76 16 37 H 0.14 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -86.17 316.76 4.87 -81.30 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.96 Total: 12.92 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 5.38 Total: -7.99 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.13 Total: -108.64 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.03 Total: -32.75 kcal Atomic # 14 Polarization: 53.47 SS G_CDS: 1.69 Total: 55.16 kcal Total: -86.17 4.87 -81.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.484 kcal (2) G-P(sol) polarization free energy of solvation -86.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds