Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 120.00068 * 2 1 4 4 H 1.48492 * 109.47316 * 239.99944 * 3 2 1 5 5 H 1.48497 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47030 * 119.99992 * 3 2 1 7 7 C 1.38952 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00337 * 192.60833 * 7 2 1 9 9 N 1.37106 * 119.99790 * 12.60927 * 7 2 1 10 10 C 1.34769 * 119.99719 * 207.85347 * 9 7 2 11 11 O 1.21290 * 120.00387 * 4.34248 * 10 9 7 12 12 C 1.50703 * 120.00029 * 184.34239 * 10 9 7 13 13 H 1.09007 * 109.42748 * 44.08450 * 12 10 9 14 14 C 1.53109 * 109.43541 * 163.98206 * 12 10 9 15 15 C 1.53493 * 109.31254 * 189.97868 * 14 12 10 16 16 C 1.50703 * 108.06127 * 311.30850 * 15 14 12 17 17 C 1.33862 * 128.68266 * 195.71181 * 16 15 14 18 18 N 1.34424 * 107.79980 * 179.97438 * 17 16 15 19 19 C 1.30780 * 109.32262 * 0.02562 * 18 17 16 20 20 N 1.34413 * 108.55026 * 0.05312 * 19 18 17 21 21 C 1.46452 * 128.45700 * 179.85365 * 20 19 18 22 22 C 1.46503 * 119.99666 * 27.84958 * 9 7 2 23 23 C 1.52992 * 117.50087 * 44.53998 * 22 9 7 24 24 C 1.52995 * 117.49774 * 113.19925 * 22 9 7 25 25 H 0.96996 * 119.99953 * 4.94066 * 1 2 3 26 26 H 1.08997 * 109.50492 * 309.94137 * 14 12 10 27 27 H 1.09011 * 109.49363 * 69.99758 * 14 12 10 28 28 H 1.08998 * 109.74190 * 70.95537 * 15 14 12 29 29 H 1.09004 * 109.74402 * 191.66740 * 15 14 12 30 30 H 1.07999 * 126.10081 * 359.93534 * 17 16 15 31 31 H 1.07998 * 125.72722 * 180.02562 * 19 18 17 32 32 H 1.08995 * 109.63769 * 77.62252 * 21 20 19 33 33 H 1.09006 * 109.55680 * 317.15207 * 21 20 19 34 34 H 1.09001 * 115.54846 * 258.86243 * 22 9 7 35 35 H 1.09003 * 117.49912 * 214.99780 * 23 22 9 36 36 H 1.09002 * 117.50229 * 0.02562 * 23 22 9 37 37 H 1.09007 * 117.49735 * 359.97058 * 24 22 9 38 38 H 1.09000 * 117.50371 * 144.96831 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0694 -1.2147 0.2036 9 7 1.3482 -2.3763 -0.2603 10 6 1.8033 -3.5347 0.2566 11 8 2.7500 -3.5301 1.0148 12 6 1.1360 -4.8360 -0.1074 13 1 0.9436 -4.8571 -1.1802 14 6 2.0543 -6.0020 0.2684 15 6 1.4923 -7.3019 -0.3236 16 6 0.0267 -7.3763 0.0196 17 6 -0.7922 -8.4339 -0.0329 18 7 -2.0110 -8.0300 0.3651 19 6 -1.9698 -6.7568 0.6609 20 7 -0.7181 -6.3109 0.4577 21 6 -0.1909 -4.9580 0.6490 22 6 0.1475 -2.3702 -1.0996 23 6 0.1885 -1.5423 -2.3855 24 6 0.2310 -3.0707 -2.4572 25 1 -0.4850 0.8369 -0.0723 26 1 3.0526 -5.8223 -0.1305 27 1 2.1065 -6.0887 1.3538 28 1 1.6172 -7.2976 -1.4064 29 1 2.0146 -8.1575 0.1045 30 1 -0.5221 -9.4332 -0.3408 31 1 -2.8019 -6.1630 1.0094 32 1 -0.0235 -4.7769 1.7107 33 1 -0.9029 -4.2304 0.2593 34 1 -0.8006 -2.4217 -0.5642 35 1 -0.7325 -1.0490 -2.6962 36 1 1.1091 -1.0024 -2.6073 37 1 1.1796 -3.5356 -2.7261 38 1 -0.6619 -3.5834 -2.8149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = 42.699361 kcal Electronic energy + Delta-G solvation = -22006.862764 eV Core-core repulsion = 18850.700235 eV Total energy + Delta-G solvation = -3156.162529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.26047 -40.91443 -38.17271 -37.04604 -34.87605 -33.95198 -33.11776 -31.57531 -28.86802 -27.15941 -25.60155 -23.91062 -23.09595 -22.91921 -22.31358 -20.76582 -19.84367 -18.81882 -18.01253 -17.83636 -17.02374 -16.61380 -16.01044 -15.94274 -15.68439 -15.07737 -14.97669 -14.82273 -14.77125 -14.18434 -14.00884 -13.76785 -13.28395 -12.96316 -12.93724 -12.63997 -12.43745 -12.31394 -12.18076 -12.10134 -11.89457 -11.54422 -11.13477 -10.90904 -10.69342 -10.45779 -10.29525 -9.66438 -9.22718 -8.30691 -6.00394 1.17073 1.36177 1.41445 1.48775 1.70753 2.04477 2.22778 2.25713 2.85370 2.98578 3.17700 3.51409 3.62147 3.67720 3.81722 3.95861 4.13422 4.15450 4.21101 4.26634 4.37214 4.42545 4.52447 4.59066 4.72039 4.78260 4.84772 4.95784 5.09727 5.11212 5.23244 5.31367 5.40598 5.46521 5.50864 5.85730 6.10353 6.29325 6.49267 7.14303 7.16870 7.43853 7.99849 8.71338 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029079 B = 0.005458 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.650694 B = 5129.134149 C = 5458.854523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.347 4.347 8 H 0.065 0.935 9 N -0.425 5.425 10 C 0.451 3.549 11 O -0.624 6.624 12 C -0.098 4.098 13 H 0.111 0.889 14 C -0.099 4.099 15 C -0.036 4.036 16 C -0.029 4.029 17 C -0.041 4.041 18 N -0.528 5.528 19 C 0.177 3.823 20 N -0.451 5.451 21 C 0.127 3.873 22 C 0.102 3.898 23 C -0.144 4.144 24 C -0.185 4.185 25 H 0.273 0.727 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.188 0.812 31 H 0.228 0.772 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 -9.110 -5.060 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.185 4.185 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.474 4.474 8 H 0.083 0.917 9 N -0.142 5.142 10 C 0.241 3.759 11 O -0.511 6.511 12 C -0.119 4.119 13 H 0.129 0.871 14 C -0.137 4.137 15 C -0.073 4.073 16 C -0.144 4.144 17 C -0.187 4.187 18 N -0.247 5.247 19 C -0.104 4.104 20 N -0.134 5.134 21 C 0.004 3.996 22 C -0.002 4.002 23 C -0.182 4.182 24 C -0.223 4.223 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.205 0.795 31 H 0.244 0.756 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.725 -9.268 -4.553 10.977 hybrid contribution 1.125 1.915 0.314 2.243 sum -2.600 -7.353 -4.239 8.877 Atomic orbital electron populations 1.69949 1.06343 1.28786 1.45947 1.25782 0.96090 1.01360 0.95305 0.85351 0.78304 0.78143 0.78741 1.19367 1.19611 1.20746 1.19389 0.92926 0.84686 1.50445 0.91706 1.43276 1.24065 1.05538 1.41317 1.20506 0.86703 0.85847 0.82894 1.90506 1.32960 1.87499 1.40139 1.21399 0.94657 0.93283 1.02600 0.87114 1.21412 0.98648 0.92681 1.01002 1.20308 0.86859 0.97812 1.02366 1.21571 0.96552 0.88163 1.08123 1.22171 0.88981 0.99781 1.07809 1.70479 1.24489 1.10441 1.19318 1.25326 0.87950 0.92291 1.04867 1.45491 1.09908 1.09216 1.48813 1.21700 0.95623 0.81212 1.01065 1.21165 0.88568 1.05332 0.85171 1.22691 1.02059 0.92964 1.00457 1.23589 1.03543 0.95465 0.99725 0.91752 0.90818 0.92793 0.88197 0.87197 0.79488 0.75577 0.90833 0.87677 0.88204 0.88410 0.91137 0.89409 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.93 10.90 21.66 0.24 -42.69 16 2 C 0.02 0.96 4.55 84.93 0.39 1.35 16 3 Si 0.97 40.67 29.58 68.60 2.03 42.70 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.35 -18.58 8.69 84.04 0.73 -17.85 16 8 H 0.07 3.78 7.56 -2.91 -0.02 3.75 16 9 N -0.42 -20.12 2.91 -613.15 -1.79 -21.90 16 10 C 0.45 20.55 6.77 87.66 0.59 21.15 16 11 O -0.62 -33.76 15.87 -3.06 -0.05 -33.80 16 12 C -0.10 -3.24 1.79 -11.43 -0.02 -3.26 16 13 H 0.11 3.35 5.46 -2.38 -0.01 3.34 16 14 C -0.10 -2.95 4.60 30.80 0.14 -2.81 16 15 C -0.04 -0.78 6.31 30.01 0.19 -0.59 16 16 C -0.03 -0.77 6.57 40.73 0.27 -0.50 16 17 C -0.04 -1.07 11.84 83.30 0.99 -0.09 16 18 N -0.53 -15.60 11.27 -200.97 -2.26 -17.86 16 19 C 0.18 4.71 12.66 180.38 2.28 6.99 16 20 N -0.45 -12.49 3.13 -515.03 -1.61 -14.10 16 21 C 0.13 3.83 6.10 86.46 0.53 4.36 16 22 C 0.10 4.00 2.74 44.99 0.12 4.12 16 23 C -0.14 -5.28 8.51 30.61 0.26 -5.02 16 24 C -0.19 -5.66 8.51 30.61 0.26 -5.40 16 25 H 0.27 12.70 8.32 -92.71 -0.77 11.93 16 26 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 27 H 0.05 1.78 8.12 -2.38 -0.02 1.76 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.19 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.23 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 33 H 0.11 3.04 6.17 -2.38 -0.01 3.03 16 34 H 0.10 3.96 7.05 -2.39 -0.02 3.94 16 35 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.07 2.91 7.75 -2.39 -0.02 2.89 16 37 H 0.09 2.70 7.65 -2.38 -0.02 2.68 16 38 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -65.23 307.53 4.35 -60.88 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.06 Total: 24.34 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.73 Total: 2.45 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -5.43 Total: -96.56 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -65.23 4.35 -60.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.580 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds