Wall clock time and date at job start Mon Mar 30 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00492 * 2 1 4 4 H 1.48501 * 109.47061 * 275.11092 * 3 2 1 5 5 H 1.48501 * 109.46957 * 35.10606 * 3 2 1 6 6 H 1.48501 * 109.47348 * 155.10457 * 3 2 1 7 7 C 1.38953 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00012 * 349.08996 * 7 2 1 9 9 N 1.37094 * 120.00154 * 169.08318 * 7 2 1 10 10 C 1.34777 * 120.00078 * 312.15653 * 9 7 2 11 11 O 1.21290 * 120.00147 * 3.59113 * 10 9 7 12 12 C 1.50697 * 120.00223 * 183.59084 * 10 9 7 13 13 H 1.08994 * 109.43212 * 322.04678 * 12 10 9 14 14 C 1.53113 * 109.43639 * 202.13710 * 12 10 9 15 15 C 1.53493 * 109.31117 * 170.02412 * 14 12 10 16 16 C 1.50707 * 108.06322 * 48.70053 * 15 14 12 17 17 C 1.33855 * 128.68171 * 164.24490 * 16 15 14 18 18 N 1.34435 * 107.79873 * 180.02562 * 17 16 15 19 19 C 1.30781 * 109.31589 * 0.02562 * 18 17 16 20 20 N 1.34404 * 108.55983 * 359.94236 * 19 18 17 21 21 C 1.46471 * 128.44734 * 180.17949 * 20 19 18 22 22 C 1.46494 * 119.99967 * 132.15259 * 9 7 2 23 23 C 1.53005 * 117.49857 * 61.32915 * 22 9 7 24 24 C 1.53001 * 117.49997 * 352.70294 * 22 9 7 25 25 H 0.97006 * 119.99458 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.49601 * 50.07209 * 14 12 10 27 27 H 1.09001 * 109.52303 * 289.99005 * 14 12 10 28 28 H 1.09003 * 109.74134 * 289.05621 * 15 14 12 29 29 H 1.09001 * 109.78408 * 168.36625 * 15 14 12 30 30 H 1.08003 * 126.10411 * 0.10217 * 17 16 15 31 31 H 1.08003 * 125.72104 * 179.91487 * 19 18 17 32 32 H 1.08994 * 109.60555 * 42.86855 * 21 20 19 33 33 H 1.09003 * 109.59472 * 282.39210 * 21 20 19 34 34 H 1.09008 * 115.55301 * 207.03391 * 22 9 7 35 35 H 1.08998 * 117.49649 * 359.97438 * 23 22 9 36 36 H 1.09003 * 117.49586 * 145.02417 * 23 22 9 37 37 H 1.08995 * 117.50069 * 214.97633 * 24 22 9 38 38 H 1.09002 * 117.49932 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.3878 2.1086 -1.3945 5 1 1.5039 2.6190 0.8052 6 1 3.5956 1.4113 0.5894 7 6 2.0089 -1.2034 -0.0005 8 1 1.4835 -2.1303 0.1761 9 7 3.3612 -1.2141 -0.2254 10 6 3.8779 -0.5211 -1.2594 11 8 3.1553 0.1642 -1.9517 12 6 5.3536 -0.5976 -1.5554 13 1 5.9102 -0.6276 -0.6188 14 6 5.7764 0.6346 -2.3600 15 6 7.3081 0.6836 -2.4460 16 6 7.7962 -0.6777 -2.8700 17 6 8.9987 -1.0249 -3.3444 18 7 8.9781 -2.3467 -3.5887 19 6 7.8007 -2.8253 -3.2804 20 7 7.0346 -1.8180 -2.8277 21 6 5.6468 -1.8676 -2.3621 22 6 4.2446 -1.9788 0.6583 23 6 4.0314 -3.4921 0.7330 24 6 3.6240 -2.6030 1.9098 25 1 -0.4850 0.8401 0.0004 26 1 5.4106 1.5347 -1.8660 27 1 5.3573 0.5750 -3.3645 28 1 7.7237 0.9365 -1.4705 29 1 7.6127 1.4292 -3.1804 30 1 9.8366 -0.3618 -3.5016 31 1 7.4950 -3.8569 -3.3742 32 1 5.5044 -2.7433 -1.7290 33 1 4.9753 -1.9201 -3.2192 34 1 5.2676 -1.6100 0.7343 35 1 3.2336 -3.9186 0.1250 36 1 4.9143 -4.1191 0.8581 37 1 4.2387 -2.6452 2.8088 38 1 2.5584 -2.4443 2.0758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:59 Heat of formation + Delta-G solvation = 66.545278 kcal Electronic energy + Delta-G solvation = -22085.697347 eV Core-core repulsion = 18930.568855 eV Total energy + Delta-G solvation = -3155.128492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26516 -39.61441 -36.90889 -35.87477 -33.12714 -32.91773 -31.68140 -30.46139 -27.84194 -25.55934 -24.27834 -22.54866 -21.92322 -21.46786 -21.28447 -19.79495 -18.63124 -17.54884 -16.90782 -16.33406 -15.55022 -15.32878 -14.93257 -14.33426 -14.09624 -13.92566 -13.85163 -13.58440 -13.30003 -13.22212 -13.01989 -12.54902 -12.00191 -11.88447 -11.35192 -11.25182 -11.06547 -10.94376 -10.88060 -10.41208 -10.19488 -10.08566 -9.92239 -9.85498 -9.43596 -8.76525 -8.60422 -8.27711 -7.63034 -6.30126 -4.19379 2.13531 2.78225 3.11007 3.21323 3.34706 3.53637 3.63714 4.05697 4.33410 4.41196 4.62000 4.70110 4.73776 4.76159 4.91750 5.06395 5.20014 5.26652 5.32243 5.38394 5.41740 5.44846 5.52101 5.57267 5.75954 5.77954 5.86434 5.99639 6.12644 6.18551 6.30863 6.45651 6.48263 6.75481 6.79452 7.27179 7.69678 7.82741 8.11804 8.57503 8.69097 9.25521 9.57637 10.73686 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.006741 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.260694 B = 4152.701241 C = 4920.135001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.087 3.913 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.312 1.312 6 H -0.285 1.285 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.432 5.432 10 C 0.463 3.537 11 O -0.534 6.534 12 C -0.116 4.116 13 H 0.091 0.909 14 C -0.107 4.107 15 C -0.047 4.047 16 C -0.019 4.019 17 C -0.032 4.032 18 N -0.501 5.501 19 C 0.181 3.819 20 N -0.450 5.450 21 C 0.119 3.881 22 C 0.056 3.944 23 C -0.198 4.198 24 C -0.169 4.169 25 H 0.274 0.726 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.379 -2.728 -0.838 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.122 4.122 3 Si 0.759 3.241 4 H -0.184 1.184 5 H -0.242 1.242 6 H -0.211 1.211 7 C -0.472 4.472 8 H 0.114 0.886 9 N -0.152 5.152 10 C 0.251 3.749 11 O -0.416 6.416 12 C -0.138 4.138 13 H 0.109 0.891 14 C -0.145 4.145 15 C -0.085 4.085 16 C -0.134 4.134 17 C -0.179 4.179 18 N -0.220 5.220 19 C -0.101 4.101 20 N -0.132 5.132 21 C -0.003 4.003 22 C -0.049 4.049 23 C -0.237 4.237 24 C -0.206 4.206 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.220 0.780 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.299 -2.802 -1.456 13.668 hybrid contribution -0.363 1.050 0.513 1.223 sum 12.936 -1.752 -0.944 13.088 Atomic orbital electron populations 1.69689 1.06718 1.28349 1.45601 1.25416 0.95085 0.99713 0.91972 0.86025 0.78475 0.81680 0.77963 1.18360 1.24187 1.21068 1.18718 0.79431 0.95243 1.53775 0.88650 1.43168 1.06594 1.43348 1.22081 1.19922 0.88205 0.84813 0.81914 1.90511 1.60337 1.40982 1.49730 1.21570 0.96997 0.95265 0.99940 0.89066 1.21503 0.93976 0.97471 1.01545 1.20280 0.95487 0.90817 1.01942 1.21224 0.93233 0.89838 1.09124 1.21766 0.96798 0.92604 1.06754 1.70471 1.19684 1.09702 1.22105 1.24747 0.87379 0.95238 1.02758 1.45497 1.12189 1.08130 1.47431 1.21874 0.79137 0.99440 0.99855 1.21884 0.94616 0.91635 0.96778 1.23305 1.03200 0.93690 1.03476 1.23161 1.03439 1.02735 0.91307 0.91638 0.90311 0.90429 0.90111 0.89336 0.81640 0.78040 0.88262 0.88949 0.87437 0.88526 0.89426 0.89371 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.96 55.50 0.77 -24.83 16 2 C 0.09 2.46 5.07 -17.47 -0.09 2.37 16 3 Si 0.93 23.80 24.45 -169.99 -4.16 19.65 16 4 H -0.26 -6.91 6.40 56.52 0.36 -6.55 16 5 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.28 -6.99 6.99 56.52 0.40 -6.60 16 7 C -0.35 -9.11 8.18 -14.93 -0.12 -9.23 16 8 H 0.10 2.65 7.78 -52.48 -0.41 2.24 16 9 N -0.43 -9.51 2.46 -107.73 -0.26 -9.77 16 10 C 0.46 9.97 4.97 -10.99 -0.05 9.91 16 11 O -0.53 -13.65 11.54 5.55 0.06 -13.59 16 12 C -0.12 -1.86 1.83 -91.57 -0.17 -2.03 16 13 H 0.09 1.36 6.23 -51.93 -0.32 1.04 16 14 C -0.11 -1.62 4.62 -26.42 -0.12 -1.74 16 15 C -0.05 -0.57 6.31 -27.62 -0.17 -0.74 16 16 C -0.02 -0.26 6.57 -81.73 -0.54 -0.80 16 17 C -0.03 -0.44 11.84 -17.95 -0.21 -0.65 16 18 N -0.50 -7.49 11.27 -14.87 -0.17 -7.65 16 19 C 0.18 2.37 12.66 -90.72 -1.15 1.22 16 20 N -0.45 -6.11 3.13 -114.09 -0.36 -6.46 16 21 C 0.12 1.66 6.23 -3.91 -0.02 1.64 16 22 C 0.06 0.97 5.52 -67.93 -0.37 0.59 16 23 C -0.20 -2.92 10.29 -26.72 -0.28 -3.20 16 24 C -0.17 -2.72 9.83 -26.73 -0.26 -2.98 16 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 27 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.17 1.85 8.06 -52.48 -0.42 1.42 16 31 H 0.20 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.10 1.25 7.75 -51.93 -0.40 0.84 16 33 H 0.09 1.35 8.12 -51.93 -0.42 0.93 16 34 H 0.11 1.60 6.28 -51.92 -0.33 1.28 16 35 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.11 2.16 6.93 -51.93 -0.36 1.80 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -32.61 305.66 -8.29 -40.90 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.22 Total: 2.80 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.56 Total: -5.64 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.02 Total: -48.72 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.06 Total: -13.59 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.16 Total: 19.65 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.61 -8.29 -40.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.449 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds