Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00492 * 2 1 4 4 H 1.48501 * 109.47061 * 275.11092 * 3 2 1 5 5 H 1.48501 * 109.46957 * 35.10606 * 3 2 1 6 6 H 1.48501 * 109.47348 * 155.10457 * 3 2 1 7 7 C 1.38953 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00012 * 349.08996 * 7 2 1 9 9 N 1.37094 * 120.00154 * 169.08318 * 7 2 1 10 10 C 1.34777 * 120.00078 * 312.15653 * 9 7 2 11 11 O 1.21290 * 120.00147 * 3.59113 * 10 9 7 12 12 C 1.50697 * 120.00223 * 183.59084 * 10 9 7 13 13 H 1.08994 * 109.43212 * 322.04678 * 12 10 9 14 14 C 1.53113 * 109.43639 * 202.13710 * 12 10 9 15 15 C 1.53493 * 109.31117 * 170.02412 * 14 12 10 16 16 C 1.50707 * 108.06322 * 48.70053 * 15 14 12 17 17 C 1.33855 * 128.68171 * 164.24490 * 16 15 14 18 18 N 1.34435 * 107.79873 * 180.02562 * 17 16 15 19 19 C 1.30781 * 109.31589 * 0.02562 * 18 17 16 20 20 N 1.34404 * 108.55983 * 359.94236 * 19 18 17 21 21 C 1.46471 * 128.44734 * 180.17949 * 20 19 18 22 22 C 1.46494 * 119.99967 * 132.15259 * 9 7 2 23 23 C 1.53005 * 117.49857 * 61.32915 * 22 9 7 24 24 C 1.53001 * 117.49997 * 352.70294 * 22 9 7 25 25 H 0.97006 * 119.99458 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.49601 * 50.07209 * 14 12 10 27 27 H 1.09001 * 109.52303 * 289.99005 * 14 12 10 28 28 H 1.09003 * 109.74134 * 289.05621 * 15 14 12 29 29 H 1.09001 * 109.78408 * 168.36625 * 15 14 12 30 30 H 1.08003 * 126.10411 * 0.10217 * 17 16 15 31 31 H 1.08003 * 125.72104 * 179.91487 * 19 18 17 32 32 H 1.08994 * 109.60555 * 42.86855 * 21 20 19 33 33 H 1.09003 * 109.59472 * 282.39210 * 21 20 19 34 34 H 1.09008 * 115.55301 * 207.03391 * 22 9 7 35 35 H 1.08998 * 117.49649 * 359.97438 * 23 22 9 36 36 H 1.09003 * 117.49586 * 145.02417 * 23 22 9 37 37 H 1.08995 * 117.50069 * 214.97633 * 24 22 9 38 38 H 1.09002 * 117.49932 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.3878 2.1086 -1.3945 5 1 1.5039 2.6190 0.8052 6 1 3.5956 1.4113 0.5894 7 6 2.0089 -1.2034 -0.0005 8 1 1.4835 -2.1303 0.1761 9 7 3.3612 -1.2141 -0.2254 10 6 3.8779 -0.5211 -1.2594 11 8 3.1553 0.1642 -1.9517 12 6 5.3536 -0.5976 -1.5554 13 1 5.9102 -0.6276 -0.6188 14 6 5.7764 0.6346 -2.3600 15 6 7.3081 0.6836 -2.4460 16 6 7.7962 -0.6777 -2.8700 17 6 8.9987 -1.0249 -3.3444 18 7 8.9781 -2.3467 -3.5887 19 6 7.8007 -2.8253 -3.2804 20 7 7.0346 -1.8180 -2.8277 21 6 5.6468 -1.8676 -2.3621 22 6 4.2446 -1.9788 0.6583 23 6 4.0314 -3.4921 0.7330 24 6 3.6240 -2.6030 1.9098 25 1 -0.4850 0.8401 0.0004 26 1 5.4106 1.5347 -1.8660 27 1 5.3573 0.5750 -3.3645 28 1 7.7237 0.9365 -1.4705 29 1 7.6127 1.4292 -3.1804 30 1 9.8366 -0.3618 -3.5016 31 1 7.4950 -3.8569 -3.3742 32 1 5.5044 -2.7433 -1.7290 33 1 4.9753 -1.9201 -3.2192 34 1 5.2676 -1.6100 0.7343 35 1 3.2336 -3.9186 0.1250 36 1 4.9143 -4.1191 0.8581 37 1 4.2387 -2.6452 2.8088 38 1 2.5584 -2.4443 2.0758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = 46.767316 kcal Electronic energy + Delta-G solvation = -22086.554984 eV Core-core repulsion = 18930.568855 eV Total energy + Delta-G solvation = -3155.986129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.29136 -41.23451 -38.32647 -37.21676 -34.96513 -33.99044 -33.48311 -31.70747 -28.94127 -27.26382 -25.52668 -23.88943 -23.14284 -22.86576 -22.32187 -21.34825 -19.89490 -19.10410 -18.12690 -17.84757 -17.19339 -16.68012 -16.41307 -15.67284 -15.48835 -15.12381 -15.04346 -14.95532 -14.82039 -14.56801 -14.44124 -14.01846 -13.47069 -13.16393 -13.01838 -12.62267 -12.47019 -12.22596 -12.18403 -12.12613 -11.97646 -11.66709 -11.32189 -10.93100 -10.83849 -10.48547 -10.40128 -9.40164 -9.25327 -8.43883 -6.30584 1.14043 1.17867 1.26614 1.45971 1.63311 1.95800 2.21850 2.37106 2.50652 2.93209 3.10222 3.42446 3.52267 3.55081 3.74911 3.91535 3.96800 4.08535 4.13559 4.18122 4.25855 4.30788 4.35745 4.49540 4.63690 4.80618 4.86846 4.88326 4.96950 5.00945 5.14303 5.22192 5.45323 5.46276 5.65453 5.81517 5.82949 6.28754 6.66847 6.81554 7.13189 7.24719 7.73864 8.63299 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.006741 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.260694 B = 4152.701241 C = 4920.135001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.037 3.963 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.313 1.313 6 H -0.265 1.265 7 C -0.329 4.329 8 H 0.069 0.931 9 N -0.447 5.447 10 C 0.461 3.539 11 O -0.581 6.581 12 C -0.104 4.104 13 H 0.114 0.886 14 C -0.107 4.107 15 C -0.035 4.035 16 C -0.031 4.031 17 C -0.040 4.040 18 N -0.531 5.531 19 C 0.184 3.816 20 N -0.453 5.453 21 C 0.130 3.870 22 C 0.037 3.963 23 C -0.172 4.172 24 C -0.174 4.174 25 H 0.272 0.728 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.185 0.815 31 H 0.233 0.767 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.962 -3.613 -0.210 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.167 4.167 3 Si 0.806 3.194 4 H -0.208 1.208 5 H -0.244 1.244 6 H -0.189 1.189 7 C -0.457 4.457 8 H 0.087 0.913 9 N -0.167 5.167 10 C 0.251 3.749 11 O -0.465 6.465 12 C -0.126 4.126 13 H 0.132 0.868 14 C -0.145 4.145 15 C -0.073 4.073 16 C -0.145 4.145 17 C -0.186 4.186 18 N -0.250 5.250 19 C -0.098 4.098 20 N -0.136 5.136 21 C 0.007 3.993 22 C -0.067 4.067 23 C -0.210 4.210 24 C -0.212 4.212 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.202 0.798 31 H 0.249 0.751 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.928 -3.709 -0.801 17.348 hybrid contribution -1.440 1.194 0.253 1.888 sum 15.487 -2.515 -0.549 15.700 Atomic orbital electron populations 1.69779 1.07944 1.28663 1.49022 1.26053 0.95567 1.02308 0.92743 0.85241 0.78497 0.79140 0.76529 1.20788 1.24368 1.18916 1.18552 0.81837 0.93729 1.51550 0.91318 1.43338 1.05675 1.44187 1.23479 1.20842 0.90434 0.82886 0.80711 1.90480 1.62209 1.42826 1.51034 1.21482 0.92572 0.96958 1.01562 0.86791 1.21489 0.96439 0.96437 1.00173 1.20276 0.92565 0.90772 1.03700 1.21469 0.93350 0.90254 1.09428 1.22141 0.97541 0.92585 1.06357 1.70495 1.20724 1.10513 1.23258 1.25393 0.86728 0.96295 1.01368 1.45486 1.11799 1.08503 1.47846 1.21701 0.79387 0.98833 0.99386 1.22233 0.95061 0.92728 0.96681 1.23336 1.03915 0.92374 1.01370 1.23192 1.01875 1.03242 0.92863 0.91837 0.91637 0.92176 0.88154 0.87393 0.79785 0.75068 0.86277 0.90233 0.83934 0.90700 0.84960 0.85751 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.40 13.96 21.66 0.30 -56.10 16 2 C 0.04 2.13 5.07 84.93 0.43 2.56 16 3 Si 0.97 50.18 24.45 68.60 1.68 51.86 16 4 H -0.28 -15.35 6.40 99.48 0.64 -14.72 16 5 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 6 H -0.26 -12.45 6.99 99.48 0.70 -11.75 16 7 C -0.33 -17.74 8.18 84.04 0.69 -17.06 16 8 H 0.07 4.00 7.78 -2.91 -0.02 3.97 16 9 N -0.45 -19.25 2.46 -613.13 -1.51 -20.76 16 10 C 0.46 19.40 4.97 87.66 0.44 19.84 16 11 O -0.58 -30.09 11.54 -3.06 -0.04 -30.13 16 12 C -0.10 -3.07 1.83 -11.41 -0.02 -3.09 16 13 H 0.11 2.88 6.23 -2.39 -0.01 2.87 16 14 C -0.11 -3.04 4.62 30.80 0.14 -2.90 16 15 C -0.04 -0.72 6.31 30.02 0.19 -0.53 16 16 C -0.03 -0.72 6.57 40.73 0.27 -0.45 16 17 C -0.04 -0.96 11.84 83.30 0.99 0.03 16 18 N -0.53 -14.26 11.27 -200.97 -2.26 -16.52 16 19 C 0.18 4.17 12.66 180.38 2.28 6.45 16 20 N -0.45 -10.75 3.13 -514.87 -1.61 -12.37 16 21 C 0.13 3.23 6.23 86.48 0.54 3.76 16 22 C 0.04 1.15 5.52 44.99 0.25 1.40 16 23 C -0.17 -4.47 10.29 30.60 0.32 -4.15 16 24 C -0.17 -5.18 9.83 30.60 0.30 -4.88 16 25 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 26 H 0.06 2.03 8.11 -2.39 -0.02 2.01 16 27 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.12 2.49 7.75 -2.39 -0.02 2.47 16 33 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 34 H 0.14 3.47 6.28 -2.38 -0.01 3.46 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.08 2.90 6.93 -2.39 -0.02 2.88 16 Total: -1.00 -74.37 305.66 4.34 -70.02 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.98 Total: 13.03 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 6.80 Total: 0.97 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.08 Total: -105.75 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.04 Total: -30.13 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 1.68 Total: 51.86 kcal Total: -74.37 4.34 -70.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.792 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds