Wall clock time and date at job start Mon Mar 30 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47286 * 36.36145 * 3 2 1 5 5 C 1.37101 * 119.99520 * 264.22915 * 4 3 2 6 6 H 1.08002 * 120.00032 * 197.71495 * 5 4 3 7 7 C 1.38946 * 120.00139 * 17.72457 * 5 4 3 8 8 N 1.31411 * 120.00004 * 21.39529 * 7 5 4 9 9 Si 1.86805 * 120.00119 * 201.39615 * 7 5 4 10 10 H 1.48492 * 109.47261 * 59.99759 * 9 7 5 11 11 H 1.48505 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46623 * 299.99739 * 9 7 5 13 13 C 1.34769 * 120.00259 * 84.22764 * 4 3 2 14 14 O 1.21290 * 120.00023 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00392 * 0.02562 * 13 4 3 16 16 C 1.52993 * 109.47693 * 179.97438 * 15 13 4 17 17 C 1.47205 * 109.46887 * 299.99996 * 16 15 13 18 18 N 6.53371 * 132.70255 * 86.63813 * 2 1 3 19 19 C 1.53001 * 109.47308 * 179.97438 * 16 15 13 20 20 C 1.53005 * 109.46866 * 179.97438 * 19 16 15 21 21 C 1.53002 * 109.47101 * 60.00354 * 20 19 16 22 22 C 1.53001 * 109.46971 * 299.99581 * 21 20 19 23 23 C 1.52997 * 109.47132 * 59.99749 * 16 15 13 24 24 H 1.08995 * 109.47550 * 276.35592 * 3 2 1 25 25 H 1.09000 * 109.47265 * 156.35777 * 3 2 1 26 26 H 0.97011 * 119.99746 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47031 * 59.99308 * 15 13 4 28 28 H 1.09005 * 109.46705 * 300.00007 * 15 13 4 29 29 H 1.08997 * 109.46879 * 60.00438 * 19 16 15 30 30 H 1.08995 * 109.47031 * 300.00141 * 19 16 15 31 31 H 1.08995 * 109.47494 * 299.99960 * 20 19 16 32 32 H 1.09005 * 109.46857 * 179.97438 * 20 19 16 33 33 H 1.08995 * 109.47269 * 59.99467 * 21 20 19 34 34 H 1.09003 * 109.46989 * 179.97438 * 21 20 19 35 35 H 1.08999 * 109.47453 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.47240 * 300.00587 * 22 21 20 37 37 H 1.09002 * 109.47246 * 300.00542 * 23 16 15 38 38 H 1.09005 * 109.47011 * 60.00021 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1114 -0.8189 5 6 3.4384 -2.3000 -0.2271 6 1 4.0551 -3.0101 -0.7581 7 6 2.9912 -2.5912 1.0558 8 7 1.9375 -1.9732 1.5404 9 14 3.8876 -3.8611 2.0918 10 1 5.2954 -3.4327 2.2913 11 1 3.2165 -3.9872 3.4105 12 1 3.8632 -5.1733 1.3969 13 6 3.2108 -0.9661 -2.1539 14 8 3.6151 -1.8870 -2.8319 15 6 2.8358 0.3405 -2.8044 16 6 3.0575 0.2405 -4.3149 17 6 4.4746 -0.0529 -4.5844 18 7 5.5671 -0.2816 -4.7933 19 6 2.6763 1.5669 -4.9753 20 6 2.8986 1.4670 -6.4858 21 6 2.0290 0.3448 -7.0562 22 6 2.4103 -0.9816 -6.3957 23 6 2.1871 -0.8812 -4.8849 24 1 2.9714 -0.1129 1.0213 25 1 2.9709 0.9422 -0.4121 26 1 1.6251 -2.1767 2.4359 27 1 3.4562 1.1397 -2.3985 28 1 1.7866 0.5580 -2.6044 29 1 3.2961 2.3663 -4.5693 30 1 1.6269 1.7837 -4.7756 31 1 3.9481 1.2504 -6.6850 32 1 2.6265 2.4118 -6.9563 33 1 0.9795 0.5614 -6.8569 34 1 2.1871 0.2739 -8.1323 35 1 1.7911 -1.7812 -6.8023 36 1 3.4598 -1.1982 -6.5949 37 1 2.4583 -1.8263 -4.4144 38 1 1.1378 -0.6640 -4.6853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597029411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:34 Heat of formation + Delta-G solvation = 11.926200 kcal Electronic energy + Delta-G solvation = -21713.658977 eV Core-core repulsion = 18556.162024 eV Total energy + Delta-G solvation = -3157.496953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06130 -38.24871 -35.85151 -35.27319 -34.41334 -32.66319 -31.81570 -30.71316 -27.75518 -27.18958 -24.55819 -22.66250 -22.60060 -20.69309 -19.21362 -17.98419 -16.69190 -16.33354 -16.16071 -15.17267 -14.88617 -14.48082 -14.34874 -13.96482 -13.90136 -13.22239 -13.04590 -13.03633 -12.85411 -12.51047 -12.14383 -11.94034 -11.77513 -11.63519 -11.54121 -11.47519 -11.36439 -11.19869 -11.10394 -10.99039 -10.62084 -10.49197 -10.44278 -10.35356 -10.09689 -9.95774 -9.27879 -8.50959 -8.08666 -6.55185 -4.04038 3.09144 3.20016 3.22146 3.29243 3.34668 3.49990 3.72316 3.91707 4.07219 4.23719 4.56262 4.77647 4.83485 4.89074 4.95418 5.13845 5.16578 5.25860 5.35470 5.49929 5.53920 5.63979 5.69735 5.80665 5.84424 5.88391 5.99723 6.05853 6.11254 6.17777 6.22799 6.33165 6.45454 6.47628 6.78883 7.43363 7.84056 8.12832 8.23254 8.67926 8.95777 9.14525 9.67334 10.50732 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.005581 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.504302 B = 5016.202700 C = 5561.204587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.246 3.754 3 C 0.219 3.781 4 N -0.439 5.439 5 C -0.314 4.314 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.877 5.877 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.451 3.549 14 O -0.562 6.562 15 C -0.132 4.132 16 C 0.061 3.939 17 C 0.242 3.758 18 N -0.450 5.450 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.121 4.121 24 H 0.128 0.872 25 H 0.084 0.916 26 H 0.274 0.726 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 9.059 -8.440 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.073 4.073 3 C 0.091 3.909 4 N -0.159 5.159 5 C -0.441 4.441 6 H 0.126 0.874 7 C -0.170 4.170 8 N -0.515 5.515 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.240 3.760 14 O -0.445 6.445 15 C -0.173 4.173 16 C 0.057 3.943 17 C -0.076 4.076 18 N -0.125 5.125 19 C -0.147 4.147 20 C -0.160 4.160 21 C -0.157 4.157 22 C -0.159 4.159 23 C -0.159 4.159 24 H 0.145 0.855 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.365 8.225 -8.892 12.118 hybrid contribution 0.226 -0.627 0.997 1.199 sum -0.139 7.598 -7.895 10.958 Atomic orbital electron populations 1.80909 1.13530 1.10423 1.10224 1.29277 0.95309 0.91103 0.91579 1.18758 0.81688 0.89921 1.00514 1.43614 1.56278 1.11944 1.04100 1.19666 1.30036 0.96205 0.98152 0.87425 1.25256 0.94942 0.98640 0.98185 1.69845 1.19756 1.43615 1.18312 0.85984 0.79528 0.80648 0.78580 1.19714 1.20976 1.19810 1.19986 0.84302 0.89455 0.82281 1.90507 1.50027 1.42677 1.61318 1.21806 1.03868 0.98673 0.92998 1.17997 0.83873 0.97187 0.95194 1.28528 0.94235 0.92339 0.92452 1.81043 1.12885 1.09071 1.09546 1.21667 1.02794 0.94875 0.95396 1.21573 1.00354 0.98858 0.95185 1.21572 0.99796 0.95045 0.99330 1.21582 1.01568 0.97083 0.95653 1.21934 0.98533 1.00306 0.95125 0.85480 0.89773 0.91531 0.89175 0.88358 0.91060 0.89786 0.92169 0.91560 0.91657 0.92312 0.91676 0.92309 0.87373 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.44 18.54 42.15 0.78 -9.66 16 2 C 0.25 5.03 12.95 -20.76 -0.27 4.76 16 3 C 0.22 4.03 4.91 -6.83 -0.03 4.00 16 4 N -0.44 -9.66 2.60 -117.94 -0.31 -9.97 16 5 C -0.31 -7.81 9.32 -14.93 -0.14 -7.95 16 6 H 0.11 2.87 7.39 -52.49 -0.39 2.49 16 7 C 0.03 0.81 4.87 -17.47 -0.09 0.72 16 8 N -0.88 -21.38 9.48 55.50 0.53 -20.85 16 9 Si 0.93 19.39 29.60 -169.99 -5.03 14.36 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.45 9.36 6.99 -10.99 -0.08 9.29 16 14 O -0.56 -13.48 12.14 5.55 0.07 -13.41 16 15 C -0.13 -1.99 3.35 -27.89 -0.09 -2.08 16 16 C 0.06 0.87 0.49 -157.30 -0.08 0.80 16 17 C 0.24 4.21 9.56 -20.77 -0.20 4.01 16 18 N -0.45 -8.88 18.53 42.13 0.78 -8.10 16 19 C -0.11 -1.13 4.71 -26.73 -0.13 -1.26 16 20 C -0.12 -1.23 5.70 -26.73 -0.15 -1.39 16 21 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 22 C -0.12 -1.54 5.70 -26.70 -0.15 -1.69 16 23 C -0.12 -1.77 4.42 -26.71 -0.12 -1.89 16 24 H 0.13 2.45 6.46 -51.93 -0.34 2.11 16 25 H 0.08 1.14 6.68 -51.93 -0.35 0.79 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.20 16 27 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 28 H 0.10 1.36 7.51 -51.93 -0.39 0.97 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.70 7.23 -51.93 -0.38 0.33 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.85 7.22 -51.93 -0.38 0.47 16 37 H 0.11 2.01 5.51 -51.93 -0.29 1.72 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -30.40 311.82 -5.14 -35.53 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.98 Total: 1.47 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.68 Total: 5.93 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 1.78 Total: -48.57 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.40 -5.14 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597029411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.460 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds