Wall clock time and date at job start Mon Mar 30 2020 01:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47286 * 36.36145 * 3 2 1 5 5 C 1.37101 * 119.99520 * 264.22915 * 4 3 2 6 6 H 1.08002 * 120.00032 * 197.71495 * 5 4 3 7 7 C 1.38946 * 120.00139 * 17.72457 * 5 4 3 8 8 N 1.31411 * 120.00004 * 21.39529 * 7 5 4 9 9 Si 1.86805 * 120.00119 * 201.39615 * 7 5 4 10 10 H 1.48492 * 109.47261 * 59.99759 * 9 7 5 11 11 H 1.48505 * 109.47190 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46623 * 299.99739 * 9 7 5 13 13 C 1.34769 * 120.00259 * 84.22764 * 4 3 2 14 14 O 1.21290 * 120.00023 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00392 * 0.02562 * 13 4 3 16 16 C 1.52993 * 109.47693 * 179.97438 * 15 13 4 17 17 C 1.47205 * 109.46887 * 299.99996 * 16 15 13 18 18 N 6.53371 * 132.70255 * 86.63813 * 2 1 3 19 19 C 1.53001 * 109.47308 * 179.97438 * 16 15 13 20 20 C 1.53005 * 109.46866 * 179.97438 * 19 16 15 21 21 C 1.53002 * 109.47101 * 60.00354 * 20 19 16 22 22 C 1.53001 * 109.46971 * 299.99581 * 21 20 19 23 23 C 1.52997 * 109.47132 * 59.99749 * 16 15 13 24 24 H 1.08995 * 109.47550 * 276.35592 * 3 2 1 25 25 H 1.09000 * 109.47265 * 156.35777 * 3 2 1 26 26 H 0.97011 * 119.99746 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47031 * 59.99308 * 15 13 4 28 28 H 1.09005 * 109.46705 * 300.00007 * 15 13 4 29 29 H 1.08997 * 109.46879 * 60.00438 * 19 16 15 30 30 H 1.08995 * 109.47031 * 300.00141 * 19 16 15 31 31 H 1.08995 * 109.47494 * 299.99960 * 20 19 16 32 32 H 1.09005 * 109.46857 * 179.97438 * 20 19 16 33 33 H 1.08995 * 109.47269 * 59.99467 * 21 20 19 34 34 H 1.09003 * 109.46989 * 179.97438 * 21 20 19 35 35 H 1.08999 * 109.47453 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.47240 * 300.00587 * 22 21 20 37 37 H 1.09002 * 109.47246 * 300.00542 * 23 16 15 38 38 H 1.09005 * 109.47011 * 60.00021 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.1114 -0.8189 5 6 3.4384 -2.3000 -0.2271 6 1 4.0551 -3.0101 -0.7581 7 6 2.9912 -2.5912 1.0558 8 7 1.9375 -1.9732 1.5404 9 14 3.8876 -3.8611 2.0918 10 1 5.2954 -3.4327 2.2913 11 1 3.2165 -3.9872 3.4105 12 1 3.8632 -5.1733 1.3969 13 6 3.2108 -0.9661 -2.1539 14 8 3.6151 -1.8870 -2.8319 15 6 2.8358 0.3405 -2.8044 16 6 3.0575 0.2405 -4.3149 17 6 4.4746 -0.0529 -4.5844 18 7 5.5671 -0.2816 -4.7933 19 6 2.6763 1.5669 -4.9753 20 6 2.8986 1.4670 -6.4858 21 6 2.0290 0.3448 -7.0562 22 6 2.4103 -0.9816 -6.3957 23 6 2.1871 -0.8812 -4.8849 24 1 2.9714 -0.1129 1.0213 25 1 2.9709 0.9422 -0.4121 26 1 1.6251 -2.1767 2.4359 27 1 3.4562 1.1397 -2.3985 28 1 1.7866 0.5580 -2.6044 29 1 3.2961 2.3663 -4.5693 30 1 1.6269 1.7837 -4.7756 31 1 3.9481 1.2504 -6.6850 32 1 2.6265 2.4118 -6.9563 33 1 0.9795 0.5614 -6.8569 34 1 2.1871 0.2739 -8.1323 35 1 1.7911 -1.7812 -6.8023 36 1 3.4598 -1.1982 -6.5949 37 1 2.4583 -1.8263 -4.4144 38 1 1.1378 -0.6640 -4.6853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597029411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:33 Heat of formation + Delta-G solvation = -5.824102 kcal Electronic energy + Delta-G solvation = -21714.428688 eV Core-core repulsion = 18556.162024 eV Total energy + Delta-G solvation = -3158.266664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37290 -39.63917 -37.48567 -36.62152 -36.10877 -34.00162 -33.42057 -31.64976 -29.28291 -28.53361 -26.16671 -23.85397 -23.54284 -21.76509 -20.68112 -19.70316 -18.16083 -17.88172 -17.42763 -16.51597 -16.31695 -15.86135 -15.51061 -15.50731 -15.08129 -14.65072 -14.49135 -14.28981 -14.09369 -13.87409 -13.69085 -13.35525 -13.17589 -13.01180 -12.91294 -12.71021 -12.66979 -12.61380 -12.38454 -12.30003 -12.12213 -12.02604 -11.92659 -11.38670 -11.21224 -11.00853 -10.93123 -10.12299 -9.86074 -8.38910 -5.92724 1.39838 1.47384 1.54953 1.85647 1.96748 2.02091 2.12215 2.31979 2.38135 2.98859 3.05337 3.17275 3.65029 3.72697 3.85379 3.91837 4.10574 4.21880 4.32331 4.45911 4.52055 4.63654 4.67294 4.74418 4.84014 4.87718 4.97091 4.98016 5.15305 5.25439 5.27953 5.31277 5.43453 5.49796 5.56973 5.60615 6.06927 6.43669 6.79758 7.08725 7.17327 7.40846 7.98596 8.64243 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.005581 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.504302 B = 5016.202700 C = 5561.204587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.259 3.741 3 C 0.219 3.781 4 N -0.456 5.456 5 C -0.338 4.338 6 H 0.075 0.925 7 C 0.010 3.990 8 N -0.889 5.889 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.286 1.286 13 C 0.445 3.555 14 O -0.603 6.603 15 C -0.125 4.125 16 C 0.060 3.940 17 C 0.258 3.742 18 N -0.504 5.504 19 C -0.104 4.104 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.119 0.881 25 H 0.143 0.857 26 H 0.274 0.726 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 11.706 -8.728 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.059 4.059 3 C 0.092 3.908 4 N -0.176 5.176 5 C -0.465 4.465 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.802 3.198 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.212 1.212 13 C 0.235 3.765 14 O -0.488 6.488 15 C -0.166 4.166 16 C 0.056 3.944 17 C -0.059 4.059 18 N -0.180 5.180 19 C -0.142 4.142 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.159 4.159 24 H 0.137 0.863 25 H 0.160 0.840 26 H 0.084 0.916 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.435 10.895 -9.175 14.316 hybrid contribution 0.559 -1.534 1.024 1.927 sum -0.876 9.361 -8.151 12.443 Atomic orbital electron populations 1.80917 1.14565 1.11568 1.11370 1.29651 0.95637 0.90042 0.90542 1.19084 0.80392 0.91095 1.00232 1.43783 1.56839 1.11990 1.05025 1.19457 1.30702 0.97509 0.98861 0.90661 1.25723 0.95203 0.99955 0.98389 1.69912 1.20087 1.44390 1.18334 0.85230 0.78993 0.78203 0.77327 1.19062 1.20209 1.21222 1.21059 0.82470 0.91110 0.81847 1.90511 1.51200 1.44814 1.62245 1.21887 1.05802 0.95969 0.92950 1.18333 0.81613 0.99360 0.95128 1.29278 0.94836 0.90798 0.90959 1.81036 1.14802 1.10872 1.11310 1.21756 1.04913 0.92432 0.95061 1.21603 0.98975 1.00082 0.95328 1.21565 1.00931 0.93133 0.99602 1.21561 1.00002 0.99370 0.94806 1.21857 0.99612 0.98378 0.96021 0.86291 0.83960 0.91605 0.85580 0.85996 0.89128 0.86827 0.94467 0.88629 0.89594 0.91354 0.91242 0.95073 0.92047 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.50 18.54 20.01 0.37 -21.13 16 2 C 0.26 10.08 12.95 89.44 1.16 11.23 16 3 C 0.22 7.56 4.91 84.57 0.42 7.98 16 4 N -0.46 -19.81 2.60 -645.43 -1.68 -21.49 16 5 C -0.34 -17.16 9.32 84.04 0.78 -16.38 16 6 H 0.08 4.24 7.39 -2.91 -0.02 4.22 16 7 C 0.01 0.47 4.87 84.93 0.41 0.88 16 8 N -0.89 -42.94 9.48 21.66 0.21 -42.74 16 9 Si 0.98 40.10 29.60 68.60 2.03 42.13 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 12 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.44 18.23 6.99 87.66 0.61 18.84 16 14 O -0.60 -29.85 12.14 -3.06 -0.04 -29.89 16 15 C -0.13 -3.39 3.35 29.85 0.10 -3.29 16 16 C 0.06 1.56 0.49 -53.99 -0.03 1.53 16 17 C 0.26 8.87 9.56 89.45 0.85 9.72 16 18 N -0.50 -20.29 18.53 20.00 0.37 -19.92 16 19 C -0.10 -1.69 4.71 30.60 0.14 -1.54 16 20 C -0.12 -2.03 5.70 30.60 0.17 -1.86 16 21 C -0.11 -1.98 5.92 30.60 0.18 -1.80 16 22 C -0.12 -2.95 5.70 30.61 0.17 -2.78 16 23 C -0.12 -3.41 4.42 30.61 0.14 -3.28 16 24 H 0.12 4.38 6.46 -2.39 -0.02 4.37 16 25 H 0.14 3.21 6.68 -2.39 -0.02 3.19 16 26 H 0.27 12.89 8.31 -92.70 -0.77 12.12 16 27 H 0.13 2.54 7.42 -2.38 -0.02 2.52 16 28 H 0.12 2.82 7.51 -2.38 -0.02 2.80 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 0.80 7.23 -2.39 -0.02 0.78 16 32 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.03 0.92 7.22 -2.38 -0.02 0.90 16 37 H 0.06 2.36 5.51 -2.39 -0.01 2.34 16 38 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -70.18 311.82 7.46 -62.72 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.08 Total: 11.05 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.12 Total: 19.27 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -0.73 Total: -105.28 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.04 Total: -29.89 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -70.18 7.46 -62.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597029411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.898 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds