Wall clock time and date at job start Mon Mar 30 2020 01:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34715 * 116.99826 * 2 1 4 4 O 1.21471 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99865 * 180.02562 * 3 2 1 6 6 C 1.39623 * 120.14731 * 179.97438 * 5 3 2 7 7 C 1.37945 * 119.84562 * 180.02562 * 6 5 3 8 8 C 1.38369 * 120.15066 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.84758 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47150 * 90.00225 * 9 8 7 11 11 C 1.47488 * 111.00006 * 265.97133 * 10 9 8 12 12 C 1.53513 * 87.93015 * 221.29265 * 11 10 9 13 13 C 1.50707 * 114.16707 * 139.67111 * 12 11 10 14 14 H 1.08002 * 119.99724 * 266.15635 * 13 12 11 15 15 C 1.37871 * 119.99856 * 86.15761 * 13 12 11 16 16 N 1.31511 * 120.00531 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99745 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46698 * 90.00270 * 17 15 13 19 19 H 1.48494 * 109.47319 * 209.99972 * 17 15 13 20 20 H 1.48491 * 109.47150 * 330.00493 * 17 15 13 21 21 C 1.47476 * 111.00149 * 169.99816 * 10 9 8 22 22 C 1.38367 * 120.30163 * 359.97438 * 8 7 6 23 23 C 1.37942 * 120.15012 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.46839 * 60.00506 * 1 2 3 25 25 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47175 * 300.00338 * 1 2 3 27 27 H 1.07998 * 120.07752 * 359.97438 * 6 5 3 28 28 H 1.08007 * 119.92273 * 179.72238 * 7 6 5 29 29 H 1.08997 * 109.47080 * 210.00264 * 9 8 7 30 30 H 1.08998 * 109.47250 * 330.00071 * 9 8 7 31 31 H 1.09001 * 113.47348 * 336.05937 * 11 10 9 32 32 H 1.09000 * 113.47388 * 106.52622 * 11 10 9 33 33 H 1.08995 * 114.34450 * 272.35994 * 12 11 10 34 34 H 0.96997 * 120.00714 * 179.97438 * 16 15 13 35 35 H 1.08997 * 113.47768 * 253.46893 * 21 10 9 36 36 H 1.08997 * 113.47894 * 23.94283 * 21 10 9 37 37 H 1.08003 * 119.91888 * 179.97438 * 22 8 7 38 38 H 1.07998 * 120.07457 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.1759 2.5201 -0.0011 7 6 5.5538 2.5850 -0.0022 8 6 6.3044 1.4226 -0.0022 9 6 7.8093 1.5015 -0.0039 10 7 8.2999 1.5281 1.3805 11 6 8.4955 2.9141 1.8454 12 6 9.7959 2.4471 2.5143 13 6 10.9398 3.4199 2.3856 14 1 11.6476 3.3170 1.5763 15 6 11.0826 4.4410 3.3008 16 7 10.2210 4.5660 4.2865 17 14 12.5009 5.6464 3.1416 18 1 12.0821 6.7949 2.2984 19 1 12.8876 6.1365 4.4889 20 1 13.6602 4.9660 2.5108 21 6 9.7650 1.3655 1.4253 22 6 5.6795 0.1881 -0.0006 23 6 4.3023 0.1087 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.5913 3.4281 -0.0015 28 1 6.0479 3.5454 -0.0071 29 1 8.2182 0.6315 -0.5176 30 1 8.1250 2.4089 -0.5188 31 1 8.6551 3.6254 1.0350 32 1 7.7370 3.2453 2.5546 33 1 9.6681 2.0647 3.5270 34 1 10.3217 5.2842 4.9306 35 1 10.0824 0.3845 1.7786 36 1 10.2634 1.6637 0.5030 37 1 6.2714 -0.7153 -0.0010 38 1 3.8159 -0.8555 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597203864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:18 Heat of formation + Delta-G solvation = -25.907622 kcal Electronic energy + Delta-G solvation = -20130.551582 eV Core-core repulsion = 16939.121280 eV Total energy + Delta-G solvation = -3191.430302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65518 -39.45613 -38.32827 -36.54560 -33.21837 -32.18409 -31.02523 -29.17324 -27.75747 -25.85489 -24.84236 -23.62819 -22.62978 -21.81227 -20.51523 -18.67786 -18.09987 -17.23736 -16.69777 -16.50059 -15.48753 -15.20193 -14.89262 -14.69499 -14.35949 -14.04019 -13.62238 -13.58516 -13.51755 -13.02923 -12.49176 -12.37193 -12.02522 -11.88977 -11.59447 -11.23419 -11.03256 -11.01149 -10.98085 -10.65833 -10.60296 -10.31717 -9.81434 -9.41601 -9.01057 -8.97513 -8.72665 -8.46497 -8.07711 -6.08594 -4.13716 0.67395 1.40323 2.47399 2.52961 3.26360 3.33978 3.36452 3.76997 4.37365 4.57186 4.79022 4.84193 4.86686 4.94064 4.95489 5.12860 5.22466 5.26250 5.32327 5.40434 5.61189 5.73094 5.89375 6.00535 6.06033 6.09290 6.22945 6.27476 6.38746 6.40311 6.61535 6.62140 6.67757 6.86577 7.10010 7.11083 7.60056 7.68618 7.85958 7.99627 8.32759 8.89658 9.51700 11.00863 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035435 B = 0.003156 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.990013 B = 8869.836594 C = 9271.565186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.512 3.488 4 O -0.511 6.511 5 C -0.142 4.142 6 C -0.052 4.052 7 C -0.123 4.123 8 C -0.017 4.017 9 C 0.047 3.953 10 N -0.478 5.478 11 C 0.004 3.996 12 C 0.042 3.958 13 C -0.518 4.518 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.005 4.005 22 C -0.120 4.120 23 C -0.063 4.063 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 -9.006 -9.962 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.400 6.400 5 C -0.144 4.144 6 C -0.070 4.070 7 C -0.141 4.141 8 C -0.018 4.018 9 C -0.081 4.081 10 N -0.200 5.200 11 C -0.124 4.124 12 C 0.023 3.977 13 C -0.556 4.556 14 H 0.076 0.924 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.081 4.081 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.690 -9.082 -9.466 19.695 hybrid contribution 0.862 1.364 -0.568 1.710 sum -13.828 -7.718 -10.034 18.747 Atomic orbital electron populations 1.23266 0.76164 1.03666 1.02605 1.86551 1.23420 1.32852 1.84454 1.21324 0.89285 0.81271 0.72346 1.90820 1.66888 1.36054 1.46275 1.18989 0.88449 0.95254 1.11660 1.21197 0.94537 0.96494 0.94785 1.21082 0.92977 0.98898 1.01157 1.20206 0.96126 0.92926 0.92541 1.21758 0.90506 1.01744 0.94117 1.68945 1.14373 1.21537 1.15172 1.24156 1.01187 0.88006 0.99098 1.20090 0.92220 0.91449 0.93949 1.21024 1.11039 1.11711 1.11832 0.92407 1.25020 0.95995 0.97715 0.94867 1.69961 1.35787 1.31988 1.14487 0.86618 0.82721 0.81368 0.77442 1.20645 1.21126 1.19818 1.24037 0.87581 1.00947 1.00813 1.21022 0.93883 0.97785 1.01126 1.21379 0.93843 0.97583 0.95269 0.91903 0.88024 0.91827 0.84760 0.85035 0.90612 0.92778 0.92727 0.91732 0.91737 0.92804 0.91828 0.92664 0.85152 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.03 9.82 -40.53 -0.40 -4.43 16 3 C 0.51 6.93 7.90 34.61 0.27 7.20 16 4 O -0.51 -7.99 16.14 -19.24 -0.31 -8.30 16 5 C -0.14 -1.91 5.87 -104.99 -0.62 -2.53 16 6 C -0.05 -0.71 9.60 -39.17 -0.38 -1.09 16 7 C -0.12 -1.74 9.68 -39.64 -0.38 -2.12 16 8 C -0.02 -0.25 5.47 -104.53 -0.57 -0.82 16 9 C 0.05 0.73 4.93 -4.98 -0.02 0.71 16 10 N -0.48 -9.16 6.32 -246.06 -1.55 -10.72 16 11 C 0.00 0.10 7.28 -7.53 -0.05 0.04 16 12 C 0.04 1.02 3.77 -91.23 -0.34 0.68 16 13 C -0.52 -13.74 8.82 -34.44 -0.30 -14.05 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -25.21 13.26 55.43 0.74 -24.48 16 17 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 21 C -0.01 -0.11 7.25 -7.54 -0.05 -0.16 16 22 C -0.12 -1.53 9.68 -39.64 -0.38 -1.92 16 23 C -0.06 -0.76 9.62 -39.17 -0.38 -1.13 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.13 1.74 7.65 -52.49 -0.40 1.34 16 28 H 0.13 1.80 8.06 -52.48 -0.42 1.37 16 29 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 30 H 0.05 0.84 7.24 -51.93 -0.38 0.47 16 31 H 0.05 1.19 7.37 -51.93 -0.38 0.81 16 32 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 37 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 38 H 0.13 1.33 7.61 -52.49 -0.40 0.94 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -29.86 329.09 -9.15 -39.01 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.31 Total: 0.37 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.25 Total: -12.11 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.82 Total: -35.19 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.71 Total: -12.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.86 -9.15 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.101 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds