Wall clock time and date at job start Mon Mar 30 2020 01:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34715 * 116.99826 * 2 1 4 4 O 1.21471 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99865 * 180.02562 * 3 2 1 6 6 C 1.39623 * 120.14731 * 179.97438 * 5 3 2 7 7 C 1.37945 * 119.84562 * 180.02562 * 6 5 3 8 8 C 1.38369 * 120.15066 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.84758 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47150 * 90.00225 * 9 8 7 11 11 C 1.47488 * 111.00006 * 265.97133 * 10 9 8 12 12 C 1.53513 * 87.93015 * 221.29265 * 11 10 9 13 13 C 1.50707 * 114.16707 * 139.67111 * 12 11 10 14 14 H 1.08002 * 119.99724 * 266.15635 * 13 12 11 15 15 C 1.37871 * 119.99856 * 86.15761 * 13 12 11 16 16 N 1.31511 * 120.00531 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99745 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46698 * 90.00270 * 17 15 13 19 19 H 1.48494 * 109.47319 * 209.99972 * 17 15 13 20 20 H 1.48491 * 109.47150 * 330.00493 * 17 15 13 21 21 C 1.47476 * 111.00149 * 169.99816 * 10 9 8 22 22 C 1.38367 * 120.30163 * 359.97438 * 8 7 6 23 23 C 1.37942 * 120.15012 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.46839 * 60.00506 * 1 2 3 25 25 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47175 * 300.00338 * 1 2 3 27 27 H 1.07998 * 120.07752 * 359.97438 * 6 5 3 28 28 H 1.08007 * 119.92273 * 179.72238 * 7 6 5 29 29 H 1.08997 * 109.47080 * 210.00264 * 9 8 7 30 30 H 1.08998 * 109.47250 * 330.00071 * 9 8 7 31 31 H 1.09001 * 113.47348 * 336.05937 * 11 10 9 32 32 H 1.09000 * 113.47388 * 106.52622 * 11 10 9 33 33 H 1.08995 * 114.34450 * 272.35994 * 12 11 10 34 34 H 0.96997 * 120.00714 * 179.97438 * 16 15 13 35 35 H 1.08997 * 113.47768 * 253.46893 * 21 10 9 36 36 H 1.08997 * 113.47894 * 23.94283 * 21 10 9 37 37 H 1.08003 * 119.91888 * 179.97438 * 22 8 7 38 38 H 1.07998 * 120.07457 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.1759 2.5201 -0.0011 7 6 5.5538 2.5850 -0.0022 8 6 6.3044 1.4226 -0.0022 9 6 7.8093 1.5015 -0.0039 10 7 8.2999 1.5281 1.3805 11 6 8.4955 2.9141 1.8454 12 6 9.7959 2.4471 2.5143 13 6 10.9398 3.4199 2.3856 14 1 11.6476 3.3170 1.5763 15 6 11.0826 4.4410 3.3008 16 7 10.2210 4.5660 4.2865 17 14 12.5009 5.6464 3.1416 18 1 12.0821 6.7949 2.2984 19 1 12.8876 6.1365 4.4889 20 1 13.6602 4.9660 2.5108 21 6 9.7650 1.3655 1.4253 22 6 5.6795 0.1881 -0.0006 23 6 4.3023 0.1087 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.5913 3.4281 -0.0015 28 1 6.0479 3.5454 -0.0071 29 1 8.2182 0.6315 -0.5176 30 1 8.1250 2.4089 -0.5188 31 1 8.6551 3.6254 1.0350 32 1 7.7370 3.2453 2.5546 33 1 9.6681 2.0647 3.5270 34 1 10.3217 5.2842 4.9306 35 1 10.0824 0.3845 1.7786 36 1 10.2634 1.6637 0.5030 37 1 6.2714 -0.7153 -0.0010 38 1 3.8159 -0.8555 0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597203864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:17 Heat of formation + Delta-G solvation = -43.850361 kcal Electronic energy + Delta-G solvation = -20131.329638 eV Core-core repulsion = 16939.121280 eV Total energy + Delta-G solvation = -3192.208357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66697 -40.86542 -39.57892 -37.53436 -34.92220 -33.69281 -32.04973 -30.56043 -28.73097 -27.40583 -26.52819 -25.06492 -23.66529 -23.10211 -21.59031 -20.45759 -19.09604 -18.67175 -18.17059 -17.42008 -16.82097 -16.66830 -16.29504 -16.00908 -15.68373 -15.58808 -14.82275 -14.55778 -14.50552 -14.22950 -13.96267 -13.52780 -13.40380 -13.20462 -13.02686 -12.91459 -12.65804 -12.39896 -12.21205 -11.85096 -11.84268 -11.76310 -11.50011 -11.21164 -10.86774 -10.49758 -9.99951 -9.91713 -9.65229 -8.14314 -6.25653 -0.38604 0.38218 1.42217 1.43107 1.44520 1.54546 1.64589 2.42961 2.70745 3.15271 3.42431 3.63764 3.74208 3.91545 3.97260 4.14678 4.29370 4.30736 4.32473 4.38177 4.45760 4.54037 4.65170 4.69417 4.75812 4.82096 4.88313 4.99535 5.02863 5.12980 5.24159 5.26104 5.33863 5.42620 5.64186 5.64822 5.83993 5.86654 6.30118 6.37940 6.61035 6.84622 7.43208 8.95317 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035435 B = 0.003156 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.990013 B = 8869.836594 C = 9271.565186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.540 6.540 5 C -0.151 4.151 6 C -0.061 4.061 7 C -0.132 4.132 8 C -0.033 4.033 9 C 0.049 3.951 10 N -0.476 5.476 11 C 0.018 3.982 12 C 0.019 3.981 13 C -0.528 4.528 14 H 0.062 0.938 15 C 0.013 3.987 16 N -0.923 5.923 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.264 1.264 21 C 0.012 3.988 22 C -0.117 4.117 23 C -0.053 4.053 24 H 0.064 0.936 25 H 0.137 0.863 26 H 0.060 0.940 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.153 0.847 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 -10.533 -11.411 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.431 6.431 5 C -0.152 4.152 6 C -0.079 4.079 7 C -0.151 4.151 8 C -0.034 4.034 9 C -0.079 4.079 10 N -0.198 5.198 11 C -0.111 4.111 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.186 4.186 16 N -0.562 5.562 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.071 4.071 24 H 0.083 0.917 25 H 0.155 0.845 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.171 0.829 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.747 -10.638 -10.933 21.218 hybrid contribution 0.771 1.746 -0.134 1.913 sum -13.976 -8.892 -11.067 19.922 Atomic orbital electron populations 1.23616 0.74184 1.06044 1.02612 1.86534 1.25323 1.31400 1.83784 1.21361 0.89323 0.81539 0.71686 1.90805 1.67471 1.37106 1.47758 1.19162 0.88813 0.95635 1.11617 1.21243 0.94445 0.97020 0.95207 1.21124 0.93272 0.99034 1.01669 1.20205 0.95485 0.93721 0.93946 1.21787 0.91356 1.02940 0.91802 1.68843 1.13881 1.18980 1.18080 1.23855 0.99122 0.89696 0.98463 1.20048 0.93032 0.93350 0.93612 1.21394 1.11578 1.11973 1.11704 0.92003 1.25834 0.98479 0.99618 0.94648 1.70095 1.37737 1.32863 1.15489 0.85582 0.79810 0.79123 0.77307 1.20103 1.21190 1.18789 1.23853 0.88283 1.00080 0.99466 1.21274 0.94345 0.97839 1.00026 1.21636 0.93578 0.98148 0.93733 0.91741 0.84466 0.92074 0.84837 0.85391 0.88048 0.92795 0.92740 0.94094 0.95369 0.92932 0.90410 0.91449 0.82943 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.29 9.82 -56.25 -0.55 -7.84 16 3 C 0.51 13.38 7.90 70.33 0.56 13.94 16 4 O -0.54 -16.77 16.14 19.93 0.32 -16.44 16 5 C -0.15 -3.87 5.87 -20.10 -0.12 -3.99 16 6 C -0.06 -1.66 9.60 22.53 0.22 -1.45 16 7 C -0.13 -3.72 9.68 22.23 0.22 -3.51 16 8 C -0.03 -0.90 5.47 -19.80 -0.11 -1.01 16 9 C 0.05 1.42 4.93 85.56 0.42 1.85 16 10 N -0.48 -17.72 6.32 -932.41 -5.89 -23.61 16 11 C 0.02 0.80 7.28 83.58 0.61 1.41 16 12 C 0.02 0.92 3.77 -11.19 -0.04 0.88 16 13 C -0.53 -28.18 8.82 25.60 0.23 -27.95 16 14 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 15 C 0.01 0.74 5.46 84.65 0.46 1.20 16 16 N -0.92 -53.92 13.26 21.44 0.28 -53.64 16 17 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 C 0.01 0.45 7.25 83.58 0.61 1.06 16 22 C -0.12 -2.67 9.68 22.23 0.22 -2.45 16 23 C -0.05 -1.15 9.62 22.53 0.22 -0.93 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.13 3.57 7.65 -2.91 -0.02 3.54 16 28 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.10 2.45 8.02 -2.39 -0.02 2.43 16 30 H 0.05 1.59 7.24 -2.39 -0.02 1.57 16 31 H 0.05 2.40 7.37 -2.39 -0.02 2.38 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.03 1.58 8.11 -2.39 -0.02 1.56 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.07 2.45 7.87 -2.39 -0.02 2.43 16 37 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.16 2.60 7.61 -2.91 -0.02 2.58 16 Total: -1.00 -64.82 329.09 1.91 -62.91 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.05 Total: 13.33 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.67 Total: -19.37 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -5.60 Total: -77.24 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.23 Total: -24.29 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.82 1.91 -62.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597203864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.063 kcal (2) G-P(sol) polarization free energy of solvation -64.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds