Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00311 * 2 1 4 4 H 1.48500 * 109.47539 * 274.99240 * 3 2 1 5 5 H 1.48499 * 109.47020 * 34.99032 * 3 2 1 6 6 H 1.48501 * 109.47491 * 154.99169 * 3 2 1 7 7 C 1.37886 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 181.44109 * 7 2 1 9 9 C 1.50700 * 119.99527 * 1.44535 * 7 2 1 10 10 C 1.52998 * 115.55216 * 325.08831 * 9 7 2 11 11 N 1.46505 * 109.47047 * 305.37639 * 10 9 7 12 12 C 1.34771 * 120.00086 * 184.73792 * 11 10 9 13 13 O 1.21686 * 119.99815 * 5.38416 * 12 11 10 14 14 C 1.46761 * 120.00248 * 185.38833 * 12 11 10 15 15 C 1.36554 * 126.84323 * 175.06331 * 14 12 11 16 16 N 1.33170 * 107.79622 * 180.02562 * 15 14 12 17 17 C 1.31370 * 109.76760 * 0.03482 * 16 15 14 18 18 N 1.34258 * 108.97936 * 359.89452 * 17 16 15 19 19 C 1.47002 * 111.32915 * 180.21545 * 18 17 16 20 20 C 1.54400 * 105.48523 * 342.91902 * 19 18 17 21 21 C 1.51650 * 141.06296 * 179.81039 * 17 16 15 22 22 C 1.53002 * 117.49620 * 110.76100 * 9 7 2 23 23 C 1.53003 * 117.49105 * 179.41920 * 9 7 2 24 24 H 0.97004 * 119.99563 * 5.00908 * 1 2 3 25 25 H 1.08994 * 109.46827 * 185.38050 * 10 9 7 26 26 H 1.08998 * 109.47174 * 65.37502 * 10 9 7 27 27 H 0.97004 * 119.99954 * 4.73802 * 11 10 9 28 28 H 1.07991 * 126.10070 * 359.75925 * 15 14 12 29 29 H 1.08993 * 110.24645 * 101.92300 * 19 18 17 30 30 H 1.09004 * 110.23928 * 223.92158 * 19 18 17 31 31 H 1.08996 * 110.98205 * 267.53979 * 20 19 18 32 32 H 1.08997 * 111.01110 * 143.75637 * 20 19 18 33 33 H 1.09000 * 110.48110 * 315.31206 * 21 17 16 34 34 H 1.09008 * 110.47265 * 77.79857 * 21 17 16 35 35 H 1.09002 * 117.49599 * 214.99318 * 22 9 7 36 36 H 1.08990 * 117.49976 * 0.02562 * 22 9 7 37 37 H 1.08990 * 117.50373 * 359.97438 * 23 9 7 38 38 H 1.09007 * 117.49237 * 144.97599 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5034 2.6198 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1943 0.0241 9 6 1.2512 -2.4990 -0.0318 10 6 -0.0759 -2.5138 0.7292 11 7 0.1498 -2.0885 2.1129 12 6 -0.8642 -2.1158 3.0002 13 8 -1.9404 -2.5849 2.6800 14 6 -0.6706 -1.5797 4.3526 15 6 -1.6196 -1.4510 5.3261 16 7 -1.0333 -0.9229 6.3988 17 6 0.2393 -0.7110 6.1505 18 7 0.5107 -1.1042 4.8958 19 6 1.9274 -0.8940 4.5643 20 6 2.4574 0.0926 5.6271 21 6 1.4953 -0.1715 6.8071 22 6 1.3424 -3.3358 -1.3095 23 6 2.0736 -3.7891 -0.0433 24 1 -0.4850 0.8369 -0.0734 25 1 -0.4876 -3.5230 0.7220 26 1 -0.7776 -1.8317 0.2493 27 1 1.0291 -1.7871 2.3904 28 1 -2.6608 -1.7243 5.2398 29 1 2.4716 -1.8366 4.6200 30 1 2.0214 -0.4616 3.5682 31 1 2.3751 1.1223 5.2794 32 1 3.4856 -0.1436 5.9014 33 1 1.2798 0.7555 7.3384 34 1 1.9173 -0.9109 7.4879 35 1 0.4569 -3.8970 -1.6077 36 1 1.9475 -2.9428 -2.1263 37 1 3.1593 -3.6942 -0.0279 38 1 1.6692 -4.6485 0.4917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597609434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 57.789072 kcal Electronic energy + Delta-G solvation = -21760.707198 eV Core-core repulsion = 18605.199008 eV Total energy + Delta-G solvation = -3155.508190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.31194 -38.59656 -36.80601 -36.23174 -33.22090 -32.33435 -31.64406 -28.74334 -27.54488 -26.09245 -25.41155 -22.19933 -21.93521 -21.29677 -20.17396 -19.47462 -19.20280 -17.30107 -16.61494 -16.14391 -15.05028 -14.94954 -14.81170 -14.43757 -14.09897 -13.84024 -13.61732 -13.41639 -13.31775 -13.02205 -12.50792 -12.28221 -11.89064 -11.70065 -11.50405 -11.25589 -11.19928 -10.86167 -10.62457 -10.37306 -9.97062 -9.83975 -9.46866 -9.30292 -9.08072 -8.98213 -8.41524 -8.25857 -7.87257 -6.13591 -4.34057 1.71635 2.73734 3.08555 3.10541 3.18333 3.19828 3.80758 3.90443 4.09803 4.16925 4.34107 4.58586 4.66913 4.83664 5.17668 5.27874 5.36151 5.41894 5.48047 5.52904 5.72476 5.77353 5.88267 5.94207 6.21532 6.32425 6.43886 6.53084 6.63270 6.80901 6.88552 6.98934 7.10786 7.16983 7.44193 7.51149 7.84843 8.14736 8.18485 8.44704 8.69344 9.01033 9.29306 10.75907 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.007295 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.788653 B = 3837.131976 C = 4634.496774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.499 4.499 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.163 3.837 11 N -0.679 5.679 12 C 0.580 3.420 13 O -0.551 6.551 14 C -0.048 4.048 15 C 0.054 3.946 16 N -0.489 5.489 17 C 0.194 3.806 18 N -0.457 5.457 19 C 0.088 3.912 20 C -0.128 4.128 21 C -0.040 4.040 22 C -0.196 4.196 23 C -0.213 4.213 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.116 0.884 27 H 0.394 0.606 28 H 0.185 0.815 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.198 0.255 9.931 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.032 3.968 10 C 0.040 3.960 11 N -0.325 5.325 12 C 0.365 3.635 13 O -0.431 6.431 14 C -0.163 4.163 15 C -0.100 4.100 16 N -0.208 5.208 17 C -0.068 4.068 18 N -0.142 5.142 19 C -0.033 4.033 20 C -0.166 4.166 21 C -0.079 4.079 22 C -0.234 4.234 23 C -0.250 4.250 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.134 0.866 27 H 0.228 0.772 28 H 0.202 0.798 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.009 0.185 10.197 11.362 hybrid contribution 1.274 0.801 -0.979 1.795 sum 6.283 0.986 9.218 11.199 Atomic orbital electron populations 1.69851 1.05707 1.26910 1.47708 1.25032 0.94871 0.99098 0.94212 0.86615 0.79745 0.83405 0.78617 1.20347 1.21042 1.19652 1.20541 0.92499 0.88538 1.52093 0.91994 1.19246 0.93117 0.89757 0.94648 1.21172 0.98255 0.97116 0.79426 1.45660 1.11700 1.64028 1.11123 1.16832 0.84857 0.79472 0.82335 1.90765 1.25900 1.47828 1.78600 1.21309 0.85148 1.12170 0.97630 1.22491 0.99406 1.00716 0.87340 1.69740 1.03447 1.19319 1.28332 1.24397 0.94189 1.02614 0.85631 1.46469 1.08480 1.45086 1.14126 1.22629 0.77270 1.01445 1.01940 1.22751 0.99999 1.00279 0.93616 1.20694 0.87654 1.02284 0.97242 1.22934 1.01393 1.06440 0.92647 1.22967 0.98085 1.00463 1.03476 0.92508 0.95546 0.86642 0.77174 0.79815 0.88596 0.87797 0.89222 0.87817 0.88422 0.88514 0.91332 0.90123 0.90607 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.45 10.20 55.43 0.57 -21.89 16 2 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 3 Si 0.89 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.50 -12.11 8.32 -34.44 -0.29 -12.39 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.03 0.76 2.06 -155.66 -0.32 0.44 16 10 C 0.16 3.85 4.63 -4.04 -0.02 3.83 16 11 N -0.68 -14.87 5.17 -61.59 -0.32 -15.19 16 12 C 0.58 12.91 7.78 -12.82 -0.10 12.81 16 13 O -0.55 -13.71 16.89 5.20 0.09 -13.62 16 14 C -0.05 -0.93 7.08 -82.04 -0.58 -1.51 16 15 C 0.05 1.00 11.65 -17.58 -0.20 0.79 16 16 N -0.49 -8.67 11.21 -10.29 -0.12 -8.79 16 17 C 0.19 2.96 8.56 -154.93 -1.33 1.63 16 18 N -0.46 -7.40 3.58 -108.27 -0.39 -7.79 16 19 C 0.09 1.09 6.66 -3.03 -0.02 1.07 16 20 C -0.13 -1.10 7.18 -25.20 -0.18 -1.28 16 21 C -0.04 -0.38 6.86 -26.61 -0.18 -0.56 16 22 C -0.20 -4.17 9.96 -26.69 -0.27 -4.43 16 23 C -0.21 -4.31 9.93 -26.69 -0.26 -4.58 16 24 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 25 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 26 H 0.12 3.09 5.89 -51.93 -0.31 2.78 16 27 H 0.39 8.11 5.69 -40.82 -0.23 7.88 16 28 H 0.18 3.12 8.06 -52.49 -0.42 2.69 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.45 7.26 -51.93 -0.38 1.07 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -30.17 318.23 -9.35 -39.52 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.11 Total: 11.40 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -3.85 Total: -2.49 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.26 Total: -53.66 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.17 -9.35 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597609434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.307 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds