Wall clock time and date at job start Mon Mar 30 2020 02:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00311 * 2 1 4 4 H 1.48500 * 109.47539 * 274.99240 * 3 2 1 5 5 H 1.48499 * 109.47020 * 34.99032 * 3 2 1 6 6 H 1.48501 * 109.47491 * 154.99169 * 3 2 1 7 7 C 1.37886 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 181.44109 * 7 2 1 9 9 C 1.50700 * 119.99527 * 1.44535 * 7 2 1 10 10 C 1.52998 * 115.55216 * 325.08831 * 9 7 2 11 11 N 1.46505 * 109.47047 * 305.37639 * 10 9 7 12 12 C 1.34771 * 120.00086 * 184.73792 * 11 10 9 13 13 O 1.21686 * 119.99815 * 5.38416 * 12 11 10 14 14 C 1.46761 * 120.00248 * 185.38833 * 12 11 10 15 15 C 1.36554 * 126.84323 * 175.06331 * 14 12 11 16 16 N 1.33170 * 107.79622 * 180.02562 * 15 14 12 17 17 C 1.31370 * 109.76760 * 0.03482 * 16 15 14 18 18 N 1.34258 * 108.97936 * 359.89452 * 17 16 15 19 19 C 1.47002 * 111.32915 * 180.21545 * 18 17 16 20 20 C 1.54400 * 105.48523 * 342.91902 * 19 18 17 21 21 C 1.51650 * 141.06296 * 179.81039 * 17 16 15 22 22 C 1.53002 * 117.49620 * 110.76100 * 9 7 2 23 23 C 1.53003 * 117.49105 * 179.41920 * 9 7 2 24 24 H 0.97004 * 119.99563 * 5.00908 * 1 2 3 25 25 H 1.08994 * 109.46827 * 185.38050 * 10 9 7 26 26 H 1.08998 * 109.47174 * 65.37502 * 10 9 7 27 27 H 0.97004 * 119.99954 * 4.73802 * 11 10 9 28 28 H 1.07991 * 126.10070 * 359.75925 * 15 14 12 29 29 H 1.08993 * 110.24645 * 101.92300 * 19 18 17 30 30 H 1.09004 * 110.23928 * 223.92158 * 19 18 17 31 31 H 1.08996 * 110.98205 * 267.53979 * 20 19 18 32 32 H 1.08997 * 111.01110 * 143.75637 * 20 19 18 33 33 H 1.09000 * 110.48110 * 315.31206 * 21 17 16 34 34 H 1.09008 * 110.47265 * 77.79857 * 21 17 16 35 35 H 1.09002 * 117.49599 * 214.99318 * 22 9 7 36 36 H 1.08990 * 117.49976 * 0.02562 * 22 9 7 37 37 H 1.08990 * 117.50373 * 359.97438 * 23 9 7 38 38 H 1.09007 * 117.49237 * 144.97599 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5034 2.6198 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0843 -1.1943 0.0241 9 6 1.2512 -2.4990 -0.0318 10 6 -0.0759 -2.5138 0.7292 11 7 0.1498 -2.0885 2.1129 12 6 -0.8642 -2.1158 3.0002 13 8 -1.9404 -2.5849 2.6800 14 6 -0.6706 -1.5797 4.3526 15 6 -1.6196 -1.4510 5.3261 16 7 -1.0333 -0.9229 6.3988 17 6 0.2393 -0.7110 6.1505 18 7 0.5107 -1.1042 4.8958 19 6 1.9274 -0.8940 4.5643 20 6 2.4574 0.0926 5.6271 21 6 1.4953 -0.1715 6.8071 22 6 1.3424 -3.3358 -1.3095 23 6 2.0736 -3.7891 -0.0433 24 1 -0.4850 0.8369 -0.0734 25 1 -0.4876 -3.5230 0.7220 26 1 -0.7776 -1.8317 0.2493 27 1 1.0291 -1.7871 2.3904 28 1 -2.6608 -1.7243 5.2398 29 1 2.4716 -1.8366 4.6200 30 1 2.0214 -0.4616 3.5682 31 1 2.3751 1.1223 5.2794 32 1 3.4856 -0.1436 5.9014 33 1 1.2798 0.7555 7.3384 34 1 1.9173 -0.9109 7.4879 35 1 0.4569 -3.8970 -1.6077 36 1 1.9475 -2.9428 -2.1263 37 1 3.1593 -3.6942 -0.0279 38 1 1.6692 -4.6485 0.4917 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597609434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:09 Heat of formation + Delta-G solvation = 39.530815 kcal Electronic energy + Delta-G solvation = -21761.498935 eV Core-core repulsion = 18605.199008 eV Total energy + Delta-G solvation = -3156.299927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.56647 -40.34907 -38.51630 -37.33722 -34.96435 -34.19621 -32.87175 -29.99269 -28.67243 -27.82877 -27.20888 -23.48069 -23.10924 -22.95988 -21.51762 -21.09197 -20.76906 -18.82858 -18.00400 -17.55784 -16.82671 -16.70306 -16.24566 -16.01330 -15.48229 -15.24508 -14.89524 -14.74394 -14.62816 -14.19897 -14.06291 -13.69342 -13.39889 -13.18693 -12.99620 -12.62432 -12.49621 -12.32526 -12.09119 -11.98079 -11.64624 -11.38956 -11.03582 -10.90593 -10.73208 -10.70521 -10.22472 -9.91152 -9.42274 -8.00735 -6.26558 0.29763 1.37879 1.43441 1.51345 1.56301 1.77371 2.23691 2.36184 2.46393 2.83500 3.01804 3.44448 3.58615 3.67654 3.83415 3.98467 4.20620 4.33835 4.43705 4.47205 4.49232 4.56108 4.69703 4.73573 4.84716 4.91573 4.96392 5.06873 5.08330 5.12315 5.24538 5.46725 5.52688 5.54460 5.71165 5.89945 5.92547 6.31031 6.63133 6.80547 6.92202 7.28008 7.39019 8.86655 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015720 B = 0.007295 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.788653 B = 3837.131976 C = 4634.496774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.032 3.968 3 Si 0.947 3.053 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.004 3.996 10 C 0.173 3.827 11 N -0.673 5.673 12 C 0.577 3.423 13 O -0.590 6.590 14 C -0.084 4.084 15 C 0.054 3.946 16 N -0.516 5.516 17 C 0.207 3.793 18 N -0.461 5.461 19 C 0.074 3.926 20 C -0.112 4.112 21 C -0.036 4.036 22 C -0.197 4.197 23 C -0.186 4.186 24 H 0.256 0.744 25 H 0.019 0.981 26 H 0.081 0.919 27 H 0.400 0.600 28 H 0.186 0.814 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.265 0.826 11.648 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.169 4.169 3 Si 0.772 3.228 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.175 1.175 7 C -0.539 4.539 8 H 0.084 0.916 9 C 0.003 3.997 10 C 0.050 3.950 11 N -0.320 5.320 12 C 0.364 3.636 13 O -0.473 6.473 14 C -0.200 4.200 15 C -0.101 4.101 16 N -0.236 5.236 17 C -0.056 4.056 18 N -0.145 5.145 19 C -0.046 4.046 20 C -0.150 4.150 21 C -0.074 4.074 22 C -0.235 4.235 23 C -0.224 4.224 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.236 0.764 28 H 0.203 0.797 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.141 0.754 11.912 14.448 hybrid contribution 0.344 0.601 -1.485 1.638 sum 8.484 1.355 10.427 13.511 Atomic orbital electron populations 1.70049 1.07079 1.26859 1.49170 1.25658 0.95315 1.01877 0.94060 0.85705 0.79413 0.79671 0.77972 1.21059 1.21865 1.17530 1.20739 0.92628 0.89123 1.51427 0.91644 1.19298 0.93382 0.90806 0.96165 1.20869 0.98205 0.95669 0.80273 1.45552 1.12015 1.63925 1.10460 1.17219 0.84217 0.78744 0.83401 1.90718 1.27220 1.49612 1.79701 1.20883 0.87355 1.15051 0.96666 1.22670 0.99704 1.00101 0.87607 1.69770 1.05041 1.20657 1.28097 1.25656 0.94669 0.99713 0.85582 1.46715 1.09049 1.44415 1.14315 1.23057 0.75528 1.03582 1.02457 1.22863 1.01679 0.99145 0.91327 1.21077 0.84790 1.03810 0.97773 1.22963 1.01934 1.06004 0.92611 1.22961 0.98510 0.98936 1.01951 0.93375 0.96231 0.90080 0.76420 0.79656 0.86696 0.89873 0.89146 0.83548 0.86335 0.85449 0.90767 0.90030 0.89225 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.69 10.20 21.45 0.22 -47.47 16 2 C 0.03 1.58 5.29 84.66 0.45 2.03 16 3 Si 0.95 38.81 29.54 68.60 2.03 40.84 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.50 -24.02 8.32 25.60 0.21 -23.80 16 8 H 0.07 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.00 0.19 2.06 -52.93 -0.11 0.08 16 10 C 0.17 8.45 4.63 86.38 0.40 8.85 16 11 N -0.67 -30.30 5.17 -467.01 -2.41 -32.71 16 12 C 0.58 26.75 7.78 86.47 0.67 27.42 16 13 O -0.59 -30.94 16.89 -4.30 -0.07 -31.01 16 14 C -0.08 -3.36 7.08 39.93 0.28 -3.08 16 15 C 0.05 2.03 11.65 84.10 0.98 3.01 16 16 N -0.52 -17.95 11.21 -186.47 -2.09 -20.05 16 17 C 0.21 5.89 8.56 138.42 1.19 7.07 16 18 N -0.46 -14.46 3.58 -496.46 -1.78 -16.24 16 19 C 0.07 1.64 6.66 86.76 0.58 2.22 16 20 C -0.11 -1.41 7.18 31.59 0.23 -1.18 16 21 C -0.04 -0.52 6.86 30.67 0.21 -0.31 16 22 C -0.20 -8.22 9.96 30.62 0.30 -7.92 16 23 C -0.19 -7.23 9.93 30.62 0.30 -6.93 16 24 H 0.26 13.56 8.32 -92.71 -0.77 12.79 16 25 H 0.02 0.95 8.05 -2.39 -0.02 0.93 16 26 H 0.08 4.56 5.89 -2.39 -0.01 4.55 16 27 H 0.40 16.67 5.69 -92.71 -0.53 16.14 16 28 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 29 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 2.22 7.26 -2.39 -0.02 2.20 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -67.72 318.23 2.14 -65.58 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.55 Total: 33.59 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.70 Total: 7.47 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -6.06 Total: -116.47 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.07 Total: -31.01 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -67.72 2.14 -65.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597609434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.112 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds