Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48504 * 109.46919 * 264.99024 * 3 2 1 5 5 H 1.48496 * 109.47159 * 24.98901 * 3 2 1 6 6 H 1.48507 * 109.47214 * 144.98947 * 3 2 1 7 7 C 1.40051 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 186.88481 * 7 2 1 9 9 C 1.46374 * 120.00080 * 6.88242 * 7 2 1 10 10 O 1.21685 * 119.99949 * 6.82321 * 9 7 2 11 11 N 1.34775 * 120.00081 * 186.81852 * 9 7 2 12 12 C 1.46499 * 119.99866 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47173 * 180.02562 * 12 11 9 14 14 C 1.38337 * 120.45088 * 255.81168 * 13 12 11 15 15 C 1.38835 * 118.50645 * 180.02562 * 14 13 12 16 16 C 1.38068 * 119.32703 * 0.27934 * 15 14 13 17 17 N 1.31945 * 120.85369 * 359.42650 * 16 15 14 18 18 C 1.32423 * 121.61947 * 0.58258 * 17 16 15 19 19 N 1.39009 * 119.70204 * 179.68502 * 18 17 16 20 20 C 1.48535 * 111.00000 * 279.67440 * 19 18 17 21 21 C 1.54938 * 103.22865 * 159.72257 * 20 19 18 22 22 C 1.54596 * 102.91836 * 322.58300 * 21 20 19 23 23 C 1.47901 * 110.99976 * 37.06838 * 19 18 17 24 24 H 0.96993 * 120.00081 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99809 * 0.02562 * 11 9 7 26 26 H 1.08998 * 109.47294 * 59.99914 * 12 11 9 27 27 H 1.09005 * 109.47334 * 299.99462 * 12 11 9 28 28 H 1.08004 * 120.74686 * 0.04227 * 14 13 12 29 29 H 1.08002 * 120.34078 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.57225 * 179.71782 * 16 15 14 31 31 H 1.08999 * 110.66645 * 278.15489 * 20 19 18 32 32 H 1.09005 * 110.66513 * 41.28647 * 20 19 18 33 33 H 1.08994 * 110.72263 * 204.23146 * 21 20 19 34 34 H 1.08991 * 110.87863 * 81.01418 * 21 20 19 35 35 H 1.08994 * 110.31501 * 263.03927 * 22 21 20 36 36 H 1.09006 * 110.30970 * 140.87277 * 22 21 20 37 37 H 1.08999 * 109.91852 * 333.50799 * 23 19 18 38 38 H 1.09002 * 109.91646 * 94.80647 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5941 1.9852 -1.3948 5 1 1.3892 2.6809 0.5914 6 1 3.4814 1.4731 0.8033 7 6 2.0070 -1.2129 0.0005 8 1 3.0811 -1.2162 0.1127 9 6 1.2830 -2.4760 -0.1508 10 8 0.0922 -2.4686 -0.4009 11 7 1.9354 -3.6473 -0.0132 12 6 1.2109 -4.9115 -0.1652 13 6 2.1621 -6.0630 0.0359 14 6 2.6246 -6.7878 -1.0478 15 6 3.4992 -7.8409 -0.8161 16 6 3.8746 -8.1356 0.4795 17 7 3.4219 -7.4233 1.4938 18 6 2.5866 -6.4117 1.3138 19 7 2.1295 -5.6922 2.4118 20 6 1.0196 -6.4073 3.0922 21 6 1.0078 -5.7782 4.5081 22 6 2.5104 -5.5707 4.8066 23 6 3.1943 -5.5412 3.4271 24 1 -0.4850 0.8400 -0.0004 25 1 2.8846 -3.6532 0.1865 26 1 0.7805 -4.9657 -1.1652 27 1 0.4141 -4.9652 0.5767 28 1 2.3125 -6.5400 -2.0516 29 1 3.8788 -8.4262 -1.6405 30 1 4.5512 -8.9568 0.6647 31 1 0.0740 -6.2240 2.5820 32 1 1.2273 -7.4759 3.1477 33 1 0.5620 -6.4621 5.2303 34 1 0.4799 -4.8247 4.5051 35 1 2.8957 -6.3983 5.4022 36 1 2.6659 -4.6252 5.3262 37 1 3.9036 -6.3649 3.3467 38 1 3.7081 -4.5901 3.2877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597941408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = 10.731522 kcal Electronic energy + Delta-G solvation = -21275.096546 eV Core-core repulsion = 18117.547787 eV Total energy + Delta-G solvation = -3157.548758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70199 -38.09880 -37.10660 -34.04700 -32.79510 -32.38698 -31.28276 -29.11730 -28.79083 -26.77039 -24.94482 -23.59684 -21.76068 -21.02204 -20.66407 -19.53599 -17.48958 -17.14198 -16.74517 -15.52278 -15.36221 -15.13486 -14.55906 -14.40643 -13.84306 -13.69820 -13.50724 -13.15563 -12.98231 -12.78328 -12.34087 -12.12871 -11.94806 -11.51290 -11.32673 -11.19386 -11.09666 -11.04938 -10.80895 -10.47347 -10.37216 -10.18225 -9.72448 -9.60613 -8.99916 -8.76771 -8.21986 -7.48994 -7.34136 -6.13547 -4.53642 1.11371 1.31911 3.19297 3.25469 3.28299 3.71749 3.83747 4.18461 4.45694 4.67248 4.75662 4.87475 4.91259 5.01503 5.08531 5.15123 5.31355 5.37354 5.40206 5.57475 5.68669 5.82046 5.83300 5.88025 5.90084 6.02795 6.11259 6.15091 6.19818 6.29473 6.45534 6.63962 6.68635 6.82933 7.41179 7.51332 7.97303 8.04772 8.20663 8.43720 9.10934 9.65810 10.68698 10.87951 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.005415 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.008496 B = 5169.872051 C = 5965.098391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.090 3.910 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.562 3.438 10 O -0.585 6.585 11 N -0.750 5.750 12 C 0.189 3.811 13 C -0.115 4.115 14 C -0.059 4.059 15 C -0.184 4.184 16 C 0.104 3.896 17 N -0.518 5.518 18 C 0.300 3.700 19 N -0.454 5.454 20 C 0.045 3.955 21 C -0.121 4.121 22 C -0.127 4.127 23 C 0.035 3.965 24 H 0.268 0.732 25 H 0.379 0.621 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -14.839 4.612 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.366 3.634 10 O -0.469 6.469 11 N -0.405 5.405 12 C 0.063 3.937 13 C -0.119 4.119 14 C -0.086 4.086 15 C -0.204 4.204 16 C -0.055 4.055 17 N -0.230 5.230 18 C 0.071 3.929 19 N -0.176 5.176 20 C -0.081 4.081 21 C -0.159 4.159 22 C -0.165 4.165 23 C -0.092 4.092 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.168 0.832 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.835 -14.411 5.101 16.363 hybrid contribution 1.064 0.170 -0.551 1.210 sum 6.898 -14.241 4.550 16.465 Atomic orbital electron populations 1.69988 1.07060 1.27211 1.35743 1.25658 0.94530 1.00111 0.92582 0.86439 0.80089 0.81538 0.78941 1.19721 1.20592 1.19065 1.20833 0.94122 0.89593 1.53659 0.91614 1.18146 0.86613 0.82218 0.76462 1.90579 1.15957 1.86825 1.53495 1.45970 1.11482 1.03899 1.79127 1.19531 0.92254 0.81689 1.00190 1.20894 1.00261 0.98784 0.91972 1.21564 0.94320 0.93446 0.99250 1.22053 1.00307 0.99552 0.98493 1.22444 0.97318 0.97413 0.88289 1.67624 1.12820 1.06209 1.36343 1.19909 0.92186 0.88870 0.91954 1.62807 1.07982 1.41232 1.05574 1.23236 0.94654 0.95842 0.94337 1.22474 0.96607 1.01675 0.95192 1.22365 0.95401 1.02065 0.96714 1.22913 0.94006 1.02593 0.89680 0.92178 0.79028 0.93112 0.91931 0.84427 0.84934 0.83200 0.89613 0.93307 0.91061 0.90119 0.91694 0.90861 0.91195 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.45 11.91 55.55 0.66 -22.78 16 2 C 0.09 2.57 5.48 -17.37 -0.10 2.48 16 3 Si 0.91 20.53 29.56 -169.99 -5.03 15.51 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -15.72 9.53 -35.63 -0.34 -16.06 16 8 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 9 C 0.56 16.28 7.72 -12.99 -0.10 16.18 16 10 O -0.59 -19.20 15.11 5.20 0.08 -19.12 16 11 N -0.75 -17.41 5.54 -62.90 -0.35 -17.76 16 12 C 0.19 3.79 5.40 -5.19 -0.03 3.76 16 13 C -0.12 -1.88 5.28 -104.27 -0.55 -2.43 16 14 C -0.06 -0.79 9.80 -39.32 -0.39 -1.18 16 15 C -0.18 -2.06 10.10 -39.42 -0.40 -2.46 16 16 C 0.10 1.23 11.17 -17.57 -0.20 1.04 16 17 N -0.52 -7.57 8.67 -12.44 -0.11 -7.68 16 18 C 0.30 4.82 5.53 -155.01 -0.86 3.96 16 19 N -0.45 -7.34 4.50 -169.24 -0.76 -8.11 16 20 C 0.05 0.64 6.50 -1.90 -0.01 0.63 16 21 C -0.12 -1.50 7.06 -24.87 -0.18 -1.67 16 22 C -0.13 -1.53 6.93 -25.37 -0.18 -1.71 16 23 C 0.04 0.51 6.59 -2.75 -0.02 0.49 16 24 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 25 H 0.38 8.20 8.44 -40.82 -0.34 7.85 16 26 H 0.05 1.03 8.00 -51.93 -0.42 0.62 16 27 H 0.06 1.36 7.91 -51.93 -0.41 0.95 16 28 H 0.14 1.64 8.05 -52.48 -0.42 1.21 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 32 H 0.05 0.67 8.00 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.01 6.56 -51.93 -0.34 0.66 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 321.79 15.07 4.85 4.85 Total: -1.00 -34.94 321.79 -9.26 -44.21 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.28 Total: 7.85 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.33 Total: 3.03 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.56 Total: -56.32 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.08 Total: -19.12 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.94 -9.26 -44.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597941408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.939 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds