Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48504 * 109.46919 * 264.99024 * 3 2 1 5 5 H 1.48496 * 109.47159 * 24.98901 * 3 2 1 6 6 H 1.48507 * 109.47214 * 144.98947 * 3 2 1 7 7 C 1.40051 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99971 * 186.88481 * 7 2 1 9 9 C 1.46374 * 120.00080 * 6.88242 * 7 2 1 10 10 O 1.21685 * 119.99949 * 6.82321 * 9 7 2 11 11 N 1.34775 * 120.00081 * 186.81852 * 9 7 2 12 12 C 1.46499 * 119.99866 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47173 * 180.02562 * 12 11 9 14 14 C 1.38337 * 120.45088 * 255.81168 * 13 12 11 15 15 C 1.38835 * 118.50645 * 180.02562 * 14 13 12 16 16 C 1.38068 * 119.32703 * 0.27934 * 15 14 13 17 17 N 1.31945 * 120.85369 * 359.42650 * 16 15 14 18 18 C 1.32423 * 121.61947 * 0.58258 * 17 16 15 19 19 N 1.39009 * 119.70204 * 179.68502 * 18 17 16 20 20 C 1.48535 * 111.00000 * 279.67440 * 19 18 17 21 21 C 1.54938 * 103.22865 * 159.72257 * 20 19 18 22 22 C 1.54596 * 102.91836 * 322.58300 * 21 20 19 23 23 C 1.47901 * 110.99976 * 37.06838 * 19 18 17 24 24 H 0.96993 * 120.00081 * 0.02562 * 1 2 3 25 25 H 0.96999 * 119.99809 * 0.02562 * 11 9 7 26 26 H 1.08998 * 109.47294 * 59.99914 * 12 11 9 27 27 H 1.09005 * 109.47334 * 299.99462 * 12 11 9 28 28 H 1.08004 * 120.74686 * 0.04227 * 14 13 12 29 29 H 1.08002 * 120.34078 * 180.02562 * 15 14 13 30 30 H 1.08005 * 119.57225 * 179.71782 * 16 15 14 31 31 H 1.08999 * 110.66645 * 278.15489 * 20 19 18 32 32 H 1.09005 * 110.66513 * 41.28647 * 20 19 18 33 33 H 1.08994 * 110.72263 * 204.23146 * 21 20 19 34 34 H 1.08991 * 110.87863 * 81.01418 * 21 20 19 35 35 H 1.08994 * 110.31501 * 263.03927 * 22 21 20 36 36 H 1.09006 * 110.30970 * 140.87277 * 22 21 20 37 37 H 1.08999 * 109.91852 * 333.50799 * 23 19 18 38 38 H 1.09002 * 109.91646 * 94.80647 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5941 1.9852 -1.3948 5 1 1.3892 2.6809 0.5914 6 1 3.4814 1.4731 0.8033 7 6 2.0070 -1.2129 0.0005 8 1 3.0811 -1.2162 0.1127 9 6 1.2830 -2.4760 -0.1508 10 8 0.0922 -2.4686 -0.4009 11 7 1.9354 -3.6473 -0.0132 12 6 1.2109 -4.9115 -0.1652 13 6 2.1621 -6.0630 0.0359 14 6 2.6246 -6.7878 -1.0478 15 6 3.4992 -7.8409 -0.8161 16 6 3.8746 -8.1356 0.4795 17 7 3.4219 -7.4233 1.4938 18 6 2.5866 -6.4117 1.3138 19 7 2.1295 -5.6922 2.4118 20 6 1.0196 -6.4073 3.0922 21 6 1.0078 -5.7782 4.5081 22 6 2.5104 -5.5707 4.8066 23 6 3.1943 -5.5412 3.4271 24 1 -0.4850 0.8400 -0.0004 25 1 2.8846 -3.6532 0.1865 26 1 0.7805 -4.9657 -1.1652 27 1 0.4141 -4.9652 0.5767 28 1 2.3125 -6.5400 -2.0516 29 1 3.8788 -8.4262 -1.6405 30 1 4.5512 -8.9568 0.6647 31 1 0.0740 -6.2240 2.5820 32 1 1.2273 -7.4759 3.1477 33 1 0.5620 -6.4621 5.2303 34 1 0.4799 -4.8247 4.5051 35 1 2.8957 -6.3983 5.4022 36 1 2.6659 -4.6252 5.3262 37 1 3.9036 -6.3649 3.3467 38 1 3.7081 -4.5901 3.2877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597941408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -14.185340 kcal Electronic energy + Delta-G solvation = -21276.177022 eV Core-core repulsion = 18117.547787 eV Total energy + Delta-G solvation = -3158.629235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82226 -39.32390 -39.08277 -35.75847 -34.53125 -33.82903 -32.88811 -30.34357 -29.88310 -28.69142 -26.61496 -24.67915 -23.06123 -22.12003 -21.77346 -21.56589 -19.31532 -18.43838 -17.88375 -17.44831 -16.66902 -16.37901 -16.07087 -15.89506 -15.38566 -15.12949 -14.88845 -14.64942 -14.26441 -13.96554 -13.89171 -13.38910 -13.32743 -13.09529 -13.03598 -12.80775 -12.56344 -12.46831 -12.28298 -12.13170 -12.01517 -11.48375 -10.90324 -10.83303 -10.71281 -10.17149 -9.76510 -9.40564 -9.30293 -8.28810 -6.80666 0.04013 0.25011 1.40124 1.42679 1.56481 2.26488 2.50536 2.65171 2.74231 3.34663 3.43252 3.65177 3.69038 3.82444 3.92342 3.94375 4.07922 4.12057 4.31262 4.36496 4.52324 4.55192 4.67722 4.75389 4.84223 4.89946 4.91736 5.00575 5.08707 5.15317 5.27817 5.31475 5.34166 5.57700 5.74080 5.90806 6.23595 6.27362 6.33775 6.89707 6.92408 7.58082 8.52826 8.70276 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.005415 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.008496 B = 5169.872051 C = 5965.098391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.032 3.968 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.546 3.454 10 O -0.635 6.635 11 N -0.735 5.735 12 C 0.199 3.801 13 C -0.141 4.141 14 C -0.059 4.059 15 C -0.168 4.168 16 C 0.108 3.892 17 N -0.530 5.530 18 C 0.290 3.710 19 N -0.483 5.483 20 C 0.046 3.954 21 C -0.117 4.117 22 C -0.120 4.120 23 C 0.036 3.964 24 H 0.275 0.725 25 H 0.387 0.613 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.150 0.850 29 H 0.175 0.825 30 H 0.190 0.810 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.441 -15.928 4.732 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.183 4.183 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.100 0.900 9 C 0.350 3.650 10 O -0.523 6.523 11 N -0.388 5.388 12 C 0.074 3.926 13 C -0.145 4.145 14 C -0.086 4.086 15 C -0.187 4.187 16 C -0.050 4.050 17 N -0.242 5.242 18 C 0.061 3.939 19 N -0.205 5.205 20 C -0.080 4.080 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.091 4.091 24 H 0.085 0.915 25 H 0.220 0.780 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.168 0.832 29 H 0.192 0.808 30 H 0.207 0.793 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.483 -15.546 5.235 18.468 hybrid contribution 0.287 0.341 -0.637 0.778 sum 8.771 -15.205 4.598 18.145 Atomic orbital electron populations 1.70149 1.09513 1.28974 1.36623 1.26910 0.95462 1.04753 0.91129 0.85069 0.78662 0.75177 0.79574 1.18616 1.19607 1.17444 1.21339 0.95069 0.90408 1.54241 0.90033 1.18512 0.86227 0.84036 0.76216 1.90529 1.17977 1.87950 1.55856 1.45633 1.11701 1.03968 1.77506 1.19373 0.92562 0.81930 0.98688 1.20579 1.01578 0.98821 0.93567 1.21798 0.94304 0.93604 0.98908 1.22450 0.98400 0.98283 0.99586 1.23212 0.96508 0.97249 0.88066 1.67687 1.12836 1.06167 1.37541 1.19872 0.92862 0.89612 0.91555 1.62731 1.08969 1.42417 1.06427 1.23217 0.93487 0.96222 0.95029 1.22467 0.97041 1.01231 0.94778 1.22359 0.94687 1.03199 0.95605 1.22902 0.93882 1.01659 0.90674 0.91547 0.78039 0.93981 0.94572 0.83219 0.80755 0.79338 0.91367 0.92567 0.88299 0.92025 0.89394 0.90567 0.90992 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.58 11.91 21.84 0.26 -51.32 16 2 C 0.03 1.86 5.48 85.31 0.47 2.33 16 3 Si 1.00 42.16 29.56 68.60 2.03 44.18 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.57 -33.82 9.53 24.83 0.24 -33.58 16 8 H 0.08 4.38 7.86 -2.91 -0.02 4.36 16 9 C 0.55 33.06 7.72 86.36 0.67 33.73 16 10 O -0.64 -43.99 15.11 -4.30 -0.06 -44.05 16 11 N -0.74 -35.62 5.54 -471.14 -2.61 -38.24 16 12 C 0.20 8.46 5.40 85.63 0.46 8.92 16 13 C -0.14 -4.66 5.28 -19.63 -0.10 -4.76 16 14 C -0.06 -1.50 9.80 22.44 0.22 -1.28 16 15 C -0.17 -3.11 10.10 22.37 0.23 -2.89 16 16 C 0.11 2.18 11.17 84.64 0.95 3.12 16 17 N -0.53 -14.51 8.67 -193.26 -1.68 -16.19 16 18 C 0.29 9.26 5.53 133.04 0.74 10.00 16 19 N -0.48 -16.05 4.50 -689.34 -3.10 -19.15 16 20 C 0.05 1.34 6.50 86.65 0.56 1.91 16 21 C -0.12 -2.87 7.06 31.80 0.22 -2.65 16 22 C -0.12 -2.79 6.93 31.47 0.22 -2.57 16 23 C 0.04 1.03 6.59 86.45 0.57 1.60 16 24 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 25 H 0.39 17.29 8.44 -92.71 -0.78 16.51 16 26 H 0.04 1.82 8.00 -2.39 -0.02 1.80 16 27 H 0.04 1.70 7.91 -2.38 -0.02 1.68 16 28 H 0.15 3.33 8.05 -2.91 -0.02 3.30 16 29 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 32 H 0.06 1.52 8.00 -2.38 -0.02 1.50 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.07 2.01 6.56 -2.39 -0.02 2.00 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -79.83 321.79 0.55 -79.28 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.29 Total: 31.61 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.43 Total: 13.87 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -7.13 Total: -124.89 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.06 Total: -44.05 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -79.83 0.55 -79.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597941408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.095 kcal (2) G-P(sol) polarization free energy of solvation -79.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds