Wall clock time and date at job start Mon Mar 30 2020 01:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86801 * 120.00314 * 2 1 4 4 H 1.48500 * 109.46932 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46997 * 119.99846 * 3 2 1 6 6 H 1.48493 * 109.47057 * 239.99938 * 3 2 1 7 7 C 1.39893 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99574 * 150.26514 * 7 2 1 9 9 C 1.41159 * 120.00399 * 330.26948 * 7 2 1 10 10 C 1.40866 * 120.16069 * 333.23016 * 9 7 2 11 11 C 1.36372 * 119.82837 * 179.76479 * 10 9 7 12 12 C 1.39482 * 120.16643 * 0.53471 * 11 10 9 13 13 N 1.39244 * 119.83577 * 179.71420 * 12 11 10 14 14 C 1.34775 * 119.99626 * 33.66575 * 13 12 11 15 15 O 1.21581 * 120.00274 * 4.76048 * 14 13 12 16 16 N 1.34780 * 119.99765 * 184.76289 * 14 13 12 17 17 C 1.46500 * 119.99529 * 180.02562 * 16 14 13 18 18 H 1.08995 * 110.29075 * 325.69820 * 17 16 14 19 19 C 1.54267 * 110.32103 * 203.57144 * 17 16 14 20 20 C 1.54375 * 105.06100 * 241.10557 * 19 17 16 21 21 N 1.48563 * 104.59806 * 23.85063 * 20 19 17 22 22 C 1.48832 * 104.23461 * 320.49679 * 21 20 19 23 23 C 1.39483 * 120.33128 * 359.69519 * 12 11 10 24 24 C 1.36375 * 120.17164 * 0.04288 * 23 12 11 25 25 H 0.96996 * 120.00287 * 173.63063 * 1 2 3 26 26 H 1.08002 * 120.08549 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.91827 * 180.22636 * 11 10 9 28 28 H 0.97000 * 120.00054 * 213.66545 * 13 12 11 29 29 H 0.96989 * 119.99994 * 359.97438 * 16 14 13 30 30 H 1.08999 * 110.32053 * 359.97438 * 19 17 16 31 31 H 1.09000 * 110.32571 * 122.20600 * 19 17 16 32 32 H 1.08993 * 110.41291 * 142.63188 * 20 19 17 33 33 H 1.09000 * 110.41272 * 265.07811 * 20 19 17 34 34 H 1.00901 * 111.00508 * 200.96024 * 21 20 19 35 35 H 1.09004 * 110.44712 * 280.77012 * 22 21 20 36 36 H 1.08997 * 110.49306 * 158.24855 * 22 21 20 37 37 H 1.08001 * 119.91142 * 180.02562 * 23 12 11 38 38 H 1.07996 * 120.08763 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2780 2.7464 0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0967 1.6963 -1.2124 7 6 2.0082 -1.2116 0.0005 8 1 2.9816 -1.2733 -0.4634 9 6 1.4418 -2.3533 0.6073 10 6 0.5137 -2.2099 1.6572 11 6 -0.0330 -3.3175 2.2353 12 6 0.3331 -4.5900 1.7969 13 7 -0.2249 -5.7163 2.3961 14 6 -1.4946 -5.6806 2.8467 15 8 -2.1809 -4.6958 2.6531 16 7 -2.0035 -6.7365 3.5119 17 6 -3.3839 -6.6979 4.0011 18 1 -3.6484 -5.6856 4.3066 19 6 -3.5621 -7.6770 5.1798 20 6 -4.6245 -8.6903 4.7025 21 7 -4.5482 -8.6421 3.2196 22 6 -4.3538 -7.1994 2.9098 23 6 1.2551 -4.7400 0.7611 24 6 1.8063 -3.6417 0.1697 25 1 -0.4850 -0.8348 -0.0932 26 1 0.2332 -1.2253 2.0012 27 1 -0.7475 -3.2092 3.0379 28 1 0.3002 -6.5266 2.4892 29 1 -1.4561 -7.5222 3.6660 30 1 -2.6227 -8.1867 5.3940 31 1 -3.9158 -7.1456 6.0633 32 1 -4.3849 -9.6905 5.0631 33 1 -5.6158 -8.3901 5.0420 34 1 -5.3985 -8.9897 2.8022 35 1 -5.3024 -6.6658 2.9700 36 1 -3.9101 -7.0776 1.9217 37 1 1.5335 -5.7285 0.4268 38 1 2.5203 -3.7594 -0.6319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599600955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:17 Heat of formation + Delta-G solvation = -7.397948 kcal Electronic energy + Delta-G solvation = -20540.465397 eV Core-core repulsion = 17382.130486 eV Total energy + Delta-G solvation = -3158.334911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11458 -38.54743 -37.28952 -34.58938 -33.76184 -32.82698 -29.93743 -29.56681 -28.88140 -27.81364 -24.65311 -22.25075 -21.65443 -21.18942 -20.49641 -19.99484 -18.01573 -17.86387 -16.91806 -16.67158 -15.81851 -14.85127 -14.52827 -14.41747 -14.19290 -13.98877 -13.35230 -13.22847 -12.63576 -12.50440 -12.47399 -12.29806 -11.99931 -11.84807 -11.66954 -11.33266 -11.15991 -11.00810 -10.98013 -10.36518 -9.99499 -9.86032 -9.41543 -9.12080 -8.96298 -8.79618 -8.68471 -7.67803 -7.22100 -6.99067 -4.29404 2.69077 2.96873 3.07088 3.19400 3.26967 3.40636 3.71132 4.03246 4.07375 4.40695 4.51776 4.63033 4.66357 4.86783 5.13434 5.23942 5.41008 5.49981 5.56277 5.59838 5.75488 5.90083 6.08531 6.30157 6.40109 6.68767 6.72192 6.83359 6.98478 6.99091 7.20089 7.22639 7.47129 7.76145 7.82597 7.89511 7.91916 8.26887 8.36546 8.50368 8.80776 8.94073 9.13034 10.09348 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039964 B = 0.003412 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.459000 B = 8204.477650 C = 8539.980220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.041 3.959 3 Si 1.062 2.938 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.093 3.907 10 C -0.208 4.208 11 C -0.066 4.066 12 C 0.001 3.999 13 N -0.666 5.666 14 C 0.693 3.307 15 O -0.579 6.579 16 N -0.739 5.739 17 C 0.163 3.837 18 H 0.095 0.905 19 C -0.131 4.131 20 C 0.034 3.966 21 N -0.666 5.666 22 C 0.022 3.978 23 C -0.095 4.095 24 C -0.218 4.218 25 H 0.300 0.700 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.391 0.609 29 H 0.393 0.607 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.336 0.664 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.954 -13.992 8.402 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.182 4.182 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.093 0.907 9 C 0.090 3.910 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.091 4.091 13 N -0.312 5.312 14 C 0.394 3.606 15 O -0.456 6.456 16 N -0.396 5.396 17 C 0.057 3.943 18 H 0.113 0.887 19 C -0.170 4.170 20 C -0.096 4.096 21 N -0.295 5.295 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.238 4.238 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.223 0.777 29 H 0.227 0.773 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.161 -11.656 8.218 15.535 hybrid contribution -0.295 -2.232 0.154 2.256 sum -6.456 -13.887 8.372 17.454 Atomic orbital electron populations 1.70451 1.08315 1.34369 1.27885 1.26997 0.95572 1.04288 0.91362 0.83690 0.75752 0.74018 0.77952 1.19932 1.19998 1.20188 1.20456 1.05541 0.95084 1.34389 0.90660 1.17679 0.90531 0.92458 0.90327 1.20763 1.04880 0.96968 1.00220 1.20362 0.98089 0.91211 0.98959 1.16870 1.05406 0.85041 1.01811 1.42067 1.11591 1.15223 1.62324 1.16054 0.81955 0.83336 0.79288 1.90927 1.59539 1.32842 1.62298 1.45157 1.14065 1.18566 1.61797 1.21394 0.80978 0.99896 0.92076 0.88681 1.22643 1.00071 0.96663 0.97630 1.22930 0.97598 0.99860 0.89182 1.63808 1.41227 1.17328 1.07154 1.23490 0.98590 0.87978 1.00779 1.20077 0.99046 0.97316 0.95118 1.20496 1.07418 0.92274 1.03636 0.88719 0.87850 0.87780 0.77655 0.77285 0.90235 0.90220 0.90034 0.93993 0.84911 0.93313 0.89402 0.89142 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.71 12.42 55.55 0.69 -21.02 16 2 C 0.04 1.06 4.80 -17.34 -0.08 0.98 16 3 Si 1.06 22.00 30.02 -169.99 -5.10 16.89 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.53 -14.26 8.92 -37.85 -0.34 -14.60 16 8 H 0.08 1.97 8.00 -52.49 -0.42 1.55 16 9 C 0.09 2.52 5.23 -106.80 -0.56 1.97 16 10 C -0.21 -5.62 8.09 -39.26 -0.32 -5.94 16 11 C -0.07 -1.67 8.57 -39.79 -0.34 -2.01 16 12 C 0.00 0.03 6.29 -83.57 -0.53 -0.50 16 13 N -0.67 -12.05 5.32 -14.10 -0.07 -12.12 16 14 C 0.69 12.68 8.29 -86.92 -0.72 11.95 16 15 O -0.58 -13.23 13.67 5.29 0.07 -13.16 16 16 N -0.74 -9.74 5.08 -57.32 -0.29 -10.03 16 17 C 0.16 1.94 3.38 -66.55 -0.22 1.71 16 18 H 0.10 1.30 7.60 -51.93 -0.39 0.91 16 19 C -0.13 -1.10 6.76 -25.35 -0.17 -1.27 16 20 C 0.03 0.26 7.47 -2.18 -0.02 0.24 16 21 N -0.67 -6.28 7.63 -109.45 -0.84 -7.12 16 22 C 0.02 0.26 7.20 -2.03 -0.01 0.24 16 23 C -0.10 -2.13 9.89 -39.79 -0.39 -2.52 16 24 C -0.22 -5.40 9.74 -39.26 -0.38 -5.78 16 25 H 0.30 8.61 7.15 -40.82 -0.29 8.32 16 26 H 0.10 2.88 6.76 -52.49 -0.35 2.53 16 27 H 0.10 2.65 6.39 -52.49 -0.34 2.31 16 28 H 0.39 5.52 8.83 -40.82 -0.36 5.16 16 29 H 0.39 4.12 8.35 -40.82 -0.34 3.78 16 30 H 0.08 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.34 2.63 8.92 -39.29 -0.35 2.28 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -31.56 316.48 -9.86 -41.42 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -5.00 Total: 15.88 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -4.09 Total: -15.51 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.51 Total: -50.29 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.10 Total: 16.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.56 -9.86 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599600955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.020 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds