Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86801 * 120.00314 * 2 1 4 4 H 1.48500 * 109.46932 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46997 * 119.99846 * 3 2 1 6 6 H 1.48493 * 109.47057 * 239.99938 * 3 2 1 7 7 C 1.39893 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99574 * 150.26514 * 7 2 1 9 9 C 1.41159 * 120.00399 * 330.26948 * 7 2 1 10 10 C 1.40866 * 120.16069 * 333.23016 * 9 7 2 11 11 C 1.36372 * 119.82837 * 179.76479 * 10 9 7 12 12 C 1.39482 * 120.16643 * 0.53471 * 11 10 9 13 13 N 1.39244 * 119.83577 * 179.71420 * 12 11 10 14 14 C 1.34775 * 119.99626 * 33.66575 * 13 12 11 15 15 O 1.21581 * 120.00274 * 4.76048 * 14 13 12 16 16 N 1.34780 * 119.99765 * 184.76289 * 14 13 12 17 17 C 1.46500 * 119.99529 * 180.02562 * 16 14 13 18 18 H 1.08995 * 110.29075 * 325.69820 * 17 16 14 19 19 C 1.54267 * 110.32103 * 203.57144 * 17 16 14 20 20 C 1.54375 * 105.06100 * 241.10557 * 19 17 16 21 21 N 1.48563 * 104.59806 * 23.85063 * 20 19 17 22 22 C 1.48832 * 104.23461 * 320.49679 * 21 20 19 23 23 C 1.39483 * 120.33128 * 359.69519 * 12 11 10 24 24 C 1.36375 * 120.17164 * 0.04288 * 23 12 11 25 25 H 0.96996 * 120.00287 * 173.63063 * 1 2 3 26 26 H 1.08002 * 120.08549 * 359.97438 * 10 9 7 27 27 H 1.07995 * 119.91827 * 180.22636 * 11 10 9 28 28 H 0.97000 * 120.00054 * 213.66545 * 13 12 11 29 29 H 0.96989 * 119.99994 * 359.97438 * 16 14 13 30 30 H 1.08999 * 110.32053 * 359.97438 * 19 17 16 31 31 H 1.09000 * 110.32571 * 122.20600 * 19 17 16 32 32 H 1.08993 * 110.41291 * 142.63188 * 20 19 17 33 33 H 1.09000 * 110.41272 * 265.07811 * 20 19 17 34 34 H 1.00901 * 111.00508 * 200.96024 * 21 20 19 35 35 H 1.09004 * 110.44712 * 280.77012 * 22 21 20 36 36 H 1.08997 * 110.49306 * 158.24855 * 22 21 20 37 37 H 1.08001 * 119.91142 * 180.02562 * 23 12 11 38 38 H 1.07996 * 120.08763 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2780 2.7464 0.0006 5 1 3.0966 1.6963 1.2125 6 1 3.0967 1.6963 -1.2124 7 6 2.0082 -1.2116 0.0005 8 1 2.9816 -1.2733 -0.4634 9 6 1.4418 -2.3533 0.6073 10 6 0.5137 -2.2099 1.6572 11 6 -0.0330 -3.3175 2.2353 12 6 0.3331 -4.5900 1.7969 13 7 -0.2249 -5.7163 2.3961 14 6 -1.4946 -5.6806 2.8467 15 8 -2.1809 -4.6958 2.6531 16 7 -2.0035 -6.7365 3.5119 17 6 -3.3839 -6.6979 4.0011 18 1 -3.6484 -5.6856 4.3066 19 6 -3.5621 -7.6770 5.1798 20 6 -4.6245 -8.6903 4.7025 21 7 -4.5482 -8.6421 3.2196 22 6 -4.3538 -7.1994 2.9098 23 6 1.2551 -4.7400 0.7611 24 6 1.8063 -3.6417 0.1697 25 1 -0.4850 -0.8348 -0.0932 26 1 0.2332 -1.2253 2.0012 27 1 -0.7475 -3.2092 3.0379 28 1 0.3002 -6.5266 2.4892 29 1 -1.4561 -7.5222 3.6660 30 1 -2.6227 -8.1867 5.3940 31 1 -3.9158 -7.1456 6.0633 32 1 -4.3849 -9.6905 5.0631 33 1 -5.6158 -8.3901 5.0420 34 1 -5.3985 -8.9897 2.8022 35 1 -5.3024 -6.6658 2.9700 36 1 -3.9101 -7.0776 1.9217 37 1 1.5335 -5.7285 0.4268 38 1 2.5203 -3.7594 -0.6319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599600955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -31.003498 kcal Electronic energy + Delta-G solvation = -20541.489010 eV Core-core repulsion = 17382.130486 eV Total energy + Delta-G solvation = -3159.358525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55572 -39.83972 -38.85833 -36.37683 -35.12138 -34.51045 -31.57158 -30.94668 -30.32124 -28.98240 -26.52675 -23.71587 -23.16421 -22.56598 -21.67919 -21.45922 -19.83375 -19.43750 -18.33268 -17.59327 -17.08091 -16.44445 -16.29266 -15.85968 -15.62958 -15.26719 -15.02937 -14.51169 -14.25236 -14.16258 -13.92909 -13.45778 -13.24350 -13.18665 -12.90952 -12.77067 -12.68493 -12.45656 -11.97289 -11.93391 -11.87739 -11.61913 -11.18335 -10.97081 -10.59338 -10.15308 -9.65808 -9.59188 -9.23814 -8.89229 -6.34163 0.80354 0.97419 1.50789 1.60537 1.75406 1.80919 2.16539 2.35074 2.70388 3.28690 3.34938 3.56221 3.65720 3.71551 4.19240 4.28572 4.29538 4.35142 4.40536 4.64977 4.74639 4.78108 4.87006 4.97933 5.01450 5.06807 5.08711 5.30691 5.42883 5.48975 5.58325 5.73496 5.75961 5.85771 5.98849 6.16617 6.26983 6.33405 6.40163 6.80024 6.96440 7.14670 7.64949 8.01877 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039964 B = 0.003412 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.459000 B = 8204.477650 C = 8539.980220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.004 3.996 3 Si 1.116 2.884 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.064 3.936 10 C -0.226 4.226 11 C -0.081 4.081 12 C 0.021 3.979 13 N -0.657 5.657 14 C 0.691 3.309 15 O -0.628 6.628 16 N -0.715 5.715 17 C 0.154 3.846 18 H 0.072 0.928 19 C -0.123 4.123 20 C 0.036 3.964 21 N -0.670 5.670 22 C 0.026 3.974 23 C -0.090 4.090 24 C -0.224 4.224 25 H 0.278 0.722 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.415 0.585 29 H 0.411 0.589 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.346 0.654 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.136 0.864 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -16.539 9.265 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.213 4.213 3 Si 0.933 3.067 4 H -0.199 1.199 5 H -0.188 1.188 6 H -0.177 1.177 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.061 3.939 10 C -0.246 4.246 11 C -0.102 4.102 12 C -0.073 4.073 13 N -0.305 5.305 14 C 0.391 3.609 15 O -0.508 6.508 16 N -0.371 5.371 17 C 0.048 3.952 18 H 0.090 0.910 19 C -0.161 4.161 20 C -0.093 4.093 21 N -0.300 5.300 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.244 4.244 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.252 0.748 29 H 0.248 0.752 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.154 0.846 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.629 -14.316 9.110 17.878 hybrid contribution -0.557 -1.702 -0.028 1.791 sum -6.186 -16.018 9.082 19.425 Atomic orbital electron populations 1.70589 1.09259 1.32868 1.30953 1.28501 0.95474 1.07776 0.89532 0.83046 0.74801 0.69626 0.79272 1.19908 1.18834 1.17686 1.20664 1.05996 0.96158 1.36045 0.90450 1.17989 0.91177 0.93928 0.90765 1.20650 1.06152 0.96522 1.01263 1.20402 0.98302 0.92279 0.99171 1.16954 1.03999 0.85460 1.00848 1.41843 1.11933 1.14846 1.61922 1.16256 0.81651 0.83728 0.79222 1.90911 1.60763 1.35128 1.64042 1.44977 1.14748 1.17624 1.59801 1.21581 0.79968 0.99933 0.93756 0.91007 1.22648 1.01122 0.95987 0.96356 1.23013 0.97983 1.00534 0.87742 1.63776 1.42172 1.15396 1.08653 1.23301 0.98425 0.89704 0.99038 1.20433 0.97798 0.98759 0.94003 1.20779 1.07567 0.92064 1.04011 0.91020 0.90268 0.88690 0.74815 0.75172 0.88997 0.88826 0.88267 0.92784 0.83803 0.93006 0.92294 0.84620 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.04 12.42 21.82 0.27 -46.77 16 2 C 0.00 0.19 4.80 85.23 0.41 0.60 16 3 Si 1.12 44.84 30.02 68.60 2.06 46.90 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.56 -31.23 8.92 23.39 0.21 -31.02 16 8 H 0.08 4.13 8.00 -2.91 -0.02 4.10 16 9 C 0.06 3.58 5.23 -21.28 -0.11 3.47 16 10 C -0.23 -12.75 8.09 22.48 0.18 -12.57 16 11 C -0.08 -4.21 8.57 22.13 0.19 -4.02 16 12 C 0.02 0.95 6.29 38.56 0.24 1.19 16 13 N -0.66 -22.46 5.32 -316.78 -1.68 -24.14 16 14 C 0.69 24.67 8.29 179.05 1.48 26.16 16 15 O -0.63 -29.24 13.67 -3.97 -0.05 -29.29 16 16 N -0.71 -17.55 5.08 -453.54 -2.30 -19.86 16 17 C 0.15 3.45 3.38 45.89 0.15 3.61 16 18 H 0.07 1.98 7.60 -2.39 -0.02 1.96 16 19 C -0.12 -1.69 6.76 31.49 0.21 -1.47 16 20 C 0.04 0.43 7.47 86.45 0.65 1.08 16 21 N -0.67 -11.02 7.63 -500.20 -3.82 -14.83 16 22 C 0.03 0.58 7.20 86.40 0.62 1.20 16 23 C -0.09 -3.81 9.89 22.14 0.22 -3.60 16 24 C -0.22 -10.97 9.74 22.48 0.22 -10.75 16 25 H 0.28 17.05 7.15 -92.71 -0.66 16.39 16 26 H 0.08 4.74 6.76 -2.91 -0.02 4.72 16 27 H 0.10 5.04 6.39 -2.91 -0.02 5.02 16 28 H 0.41 10.24 8.83 -92.71 -0.82 9.43 16 29 H 0.41 7.31 8.35 -92.72 -0.77 6.54 16 30 H 0.09 1.07 7.65 -2.39 -0.02 1.05 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.35 4.62 8.92 -89.69 -0.80 3.82 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.65 8.05 -2.39 -0.02 1.63 16 37 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -72.36 316.48 -2.03 -74.38 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.18 Total: 39.72 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.68 Total: -26.11 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -7.53 Total: -105.60 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.05 Total: -29.29 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.06 Total: 46.90 kcal Total: -72.36 -2.03 -74.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599600955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.380 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds