Wall clock time and date at job start Mon Mar 30 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86806 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99814 * 3 2 1 5 5 H 1.48504 * 109.46785 * 29.99724 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99504 * 3 2 1 7 7 C 1.39935 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00031 * 196.78760 * 7 2 1 9 9 C 1.41401 * 120.00027 * 16.78962 * 7 2 1 10 10 C 1.40781 * 120.21164 * 205.14948 * 9 7 2 11 11 C 1.37646 * 119.88259 * 180.02562 * 10 9 7 12 12 C 1.38531 * 120.32449 * 359.72332 * 11 10 9 13 13 C 1.39244 * 120.42474 * 0.55168 * 12 11 10 14 14 N 1.39956 * 119.94614 * 179.72079 * 13 12 11 15 15 C 1.34782 * 119.99920 * 325.52941 * 14 13 12 16 16 O 1.21585 * 119.99606 * 354.84473 * 15 14 13 17 17 N 1.34776 * 120.00234 * 174.84972 * 15 14 13 18 18 C 1.46498 * 120.00117 * 179.97438 * 17 15 14 19 19 H 1.08990 * 110.28692 * 327.12621 * 18 17 15 20 20 C 1.54265 * 110.32216 * 204.99913 * 18 17 15 21 21 C 1.54375 * 105.14747 * 241.05214 * 20 18 17 22 22 N 1.48716 * 104.51976 * 336.27219 * 21 20 18 23 23 C 1.48558 * 104.28987 * 39.36323 * 22 21 20 24 24 C 1.38275 * 120.10843 * 359.44932 * 13 12 11 25 25 H 0.96997 * 120.00350 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.05397 * 0.04480 * 10 9 7 27 27 H 1.08003 * 119.83228 * 180.02562 * 11 10 9 28 28 H 1.07994 * 119.78669 * 180.27815 * 12 11 10 29 29 H 0.97001 * 120.00194 * 145.52336 * 14 13 12 30 30 H 0.97004 * 119.99481 * 359.97438 * 17 15 14 31 31 H 1.09001 * 110.32207 * 0.02562 * 20 18 17 32 32 H 1.08998 * 110.32030 * 122.10441 * 20 18 17 33 33 H 1.09003 * 110.41021 * 94.97773 * 21 20 18 34 34 H 1.08994 * 110.41095 * 217.41757 * 21 20 18 35 35 H 1.00905 * 110.91901 * 279.80909 * 22 21 20 36 36 H 1.09001 * 110.41486 * 201.79881 * 23 22 21 37 37 H 1.09001 * 110.51402 * 79.40165 * 23 22 21 38 38 H 1.08001 * 120.15971 * 180.28608 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0535 -1.2317 0.2707 9 6 1.3462 -2.4105 -0.3526 10 6 1.8187 -3.6477 0.1247 11 6 1.1696 -4.8104 -0.2237 12 6 0.0494 -4.7691 -1.0378 13 6 -0.4259 -3.5532 -1.5220 14 7 -1.5550 -3.5236 -2.3485 15 6 -1.7792 -4.5277 -3.2192 16 8 -0.9546 -5.4109 -3.3540 17 7 -2.9174 -4.5526 -3.9406 18 6 -3.1609 -5.6437 -4.8874 19 1 -2.2210 -5.9832 -5.3225 20 6 -4.1297 -5.1843 -5.9965 21 6 -5.3553 -6.1149 -5.8724 22 7 -4.8312 -7.3340 -5.2011 23 6 -3.8822 -6.8132 -4.1838 24 6 0.2125 -2.3744 -1.1831 25 1 -0.4850 0.8400 -0.0004 26 1 2.6888 -3.6844 0.7635 27 1 1.5325 -5.7591 0.1433 28 1 -0.4558 -5.6863 -1.3021 29 1 -2.1762 -2.7806 -2.2946 30 1 -3.5754 -3.8480 -3.8327 31 1 -4.4237 -4.1470 -5.8366 32 1 -3.6653 -5.2985 -6.9760 33 1 -6.1274 -5.6471 -5.2614 34 1 -5.7473 -6.3608 -6.8592 35 1 -4.3602 -7.9345 -5.8612 36 1 -3.1670 -7.5855 -3.9004 37 1 -4.4211 -6.4550 -3.3066 38 1 -0.1583 -1.4304 -1.5545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599606055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:04 Heat of formation + Delta-G solvation = -3.642961 kcal Electronic energy + Delta-G solvation = -20597.110733 eV Core-core repulsion = 17438.938651 eV Total energy + Delta-G solvation = -3158.172083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16341 -38.60929 -37.14232 -34.24180 -33.85751 -33.16350 -29.70161 -29.48217 -28.79275 -27.33131 -25.21074 -22.37522 -21.84146 -21.14298 -20.56840 -19.91657 -18.18508 -17.40327 -16.61368 -16.23876 -15.53653 -15.06987 -14.67741 -14.61030 -14.21462 -14.13850 -13.74357 -13.16641 -12.99694 -12.69129 -12.34563 -12.07978 -11.80267 -11.60832 -11.43823 -11.23085 -11.13466 -11.05009 -10.72506 -10.63406 -10.04830 -9.70814 -9.54851 -9.43841 -9.22253 -8.97318 -8.63759 -7.34885 -6.96920 -6.66287 -4.35136 2.72175 2.90116 3.01202 3.07509 3.11252 3.25304 3.68344 3.94353 4.02520 4.40142 4.60713 4.66372 4.69574 4.79926 5.09216 5.24946 5.33784 5.54214 5.65754 5.70475 5.82958 5.93520 6.27270 6.29342 6.63368 6.71141 6.73397 6.82016 7.01075 7.04978 7.08241 7.24032 7.40367 7.66851 7.85862 8.00589 8.06215 8.29143 8.47097 8.62626 8.91185 8.93772 9.06711 10.20726 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.003767 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.219517 B = 7431.985366 C = 8155.215310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.229 4.229 11 C -0.086 4.086 12 C -0.225 4.225 13 C 0.163 3.837 14 N -0.678 5.678 15 C 0.699 3.301 16 O -0.575 6.575 17 N -0.742 5.742 18 C 0.133 3.867 19 H 0.094 0.906 20 C -0.166 4.166 21 C 0.040 3.960 22 N -0.668 5.668 23 C 0.028 3.972 24 C -0.184 4.184 25 H 0.278 0.722 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.398 0.602 30 H 0.394 0.606 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.338 0.662 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 -4.889 -9.725 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.249 4.249 11 C -0.105 4.105 12 C -0.247 4.247 13 C 0.071 3.929 14 N -0.324 5.324 15 C 0.400 3.600 16 O -0.451 6.451 17 N -0.399 5.399 18 C 0.025 3.975 19 H 0.112 0.888 20 C -0.206 4.206 21 C -0.090 4.090 22 N -0.295 5.295 23 C -0.103 4.103 24 C -0.206 4.206 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.232 0.768 30 H 0.228 0.772 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.360 -5.727 -9.390 15.110 hybrid contribution 0.483 1.931 -0.461 2.043 sum -9.878 -3.795 -9.851 14.458 Atomic orbital electron populations 1.69818 1.07506 1.28884 1.36451 1.25866 0.94736 1.01161 0.92232 0.86327 0.80536 0.80696 0.79215 1.19409 1.20416 1.18646 1.19539 0.97791 0.90988 1.41075 0.90381 1.17345 0.90551 0.92148 0.88151 1.21037 1.03905 0.92911 1.07078 1.20416 0.95628 0.96579 0.97872 1.20316 1.02085 0.95657 1.06612 1.17406 0.87589 0.95016 0.92900 1.42626 1.26903 1.23687 1.39175 1.16004 0.81938 0.82967 0.79108 1.90921 1.45662 1.38970 1.69542 1.45189 1.21043 1.28772 1.44920 1.22168 0.99353 0.87293 0.88725 0.88826 1.23188 0.97025 1.01459 0.98951 1.23044 0.96660 0.90117 0.99196 1.63336 1.34969 1.15269 1.15905 1.23515 0.94113 0.96490 0.96168 1.21037 0.99954 0.95306 1.04300 0.91131 0.88891 0.89080 0.88037 0.76818 0.77244 0.90256 0.90512 0.90138 0.90599 0.84709 0.90054 0.89801 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.16 10.94 55.55 0.61 -19.55 16 2 C 0.08 1.90 5.16 -17.34 -0.09 1.82 16 3 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.31 9.05 -37.74 -0.34 -12.65 16 8 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 10 C -0.23 -5.78 9.79 -38.84 -0.38 -6.16 16 11 C -0.09 -2.05 10.02 -39.69 -0.40 -2.45 16 12 C -0.23 -5.48 8.66 -39.10 -0.34 -5.82 16 13 C 0.16 3.89 6.25 -83.76 -0.52 3.36 16 14 N -0.68 -13.00 5.34 -14.27 -0.08 -13.08 16 15 C 0.70 12.80 8.29 -86.91 -0.72 12.08 16 16 O -0.57 -12.76 13.74 5.29 0.07 -12.69 16 17 N -0.74 -9.61 5.07 -57.32 -0.29 -9.90 16 18 C 0.13 1.51 3.41 -66.55 -0.23 1.28 16 19 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 20 C -0.17 -1.35 6.75 -25.35 -0.17 -1.52 16 21 C 0.04 0.30 7.48 -2.10 -0.02 0.29 16 22 N -0.67 -6.22 7.63 -109.54 -0.84 -7.06 16 23 C 0.03 0.32 7.19 -2.18 -0.02 0.30 16 24 C -0.18 -4.74 8.60 -38.68 -0.33 -5.07 16 25 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 26 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 28 H 0.10 2.46 6.48 -52.49 -0.34 2.12 16 29 H 0.40 6.42 8.83 -40.82 -0.36 6.06 16 30 H 0.39 3.99 8.38 -40.82 -0.34 3.65 16 31 H 0.08 0.59 7.67 -51.93 -0.40 0.19 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.34 2.69 8.92 -39.29 -0.35 2.34 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -30.61 316.77 -9.94 -40.55 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.01 Total: 15.31 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.15 Total: -11.90 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.59 Total: -49.59 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.61 -9.94 -40.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599606055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.904 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds