Wall clock time and date at job start Mon Mar 30 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86806 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99814 * 3 2 1 5 5 H 1.48504 * 109.46785 * 29.99724 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99504 * 3 2 1 7 7 C 1.39935 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00031 * 196.78760 * 7 2 1 9 9 C 1.41401 * 120.00027 * 16.78962 * 7 2 1 10 10 C 1.40781 * 120.21164 * 205.14948 * 9 7 2 11 11 C 1.37646 * 119.88259 * 180.02562 * 10 9 7 12 12 C 1.38531 * 120.32449 * 359.72332 * 11 10 9 13 13 C 1.39244 * 120.42474 * 0.55168 * 12 11 10 14 14 N 1.39956 * 119.94614 * 179.72079 * 13 12 11 15 15 C 1.34782 * 119.99920 * 325.52941 * 14 13 12 16 16 O 1.21585 * 119.99606 * 354.84473 * 15 14 13 17 17 N 1.34776 * 120.00234 * 174.84972 * 15 14 13 18 18 C 1.46498 * 120.00117 * 179.97438 * 17 15 14 19 19 H 1.08990 * 110.28692 * 327.12621 * 18 17 15 20 20 C 1.54265 * 110.32216 * 204.99913 * 18 17 15 21 21 C 1.54375 * 105.14747 * 241.05214 * 20 18 17 22 22 N 1.48716 * 104.51976 * 336.27219 * 21 20 18 23 23 C 1.48558 * 104.28987 * 39.36323 * 22 21 20 24 24 C 1.38275 * 120.10843 * 359.44932 * 13 12 11 25 25 H 0.96997 * 120.00350 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.05397 * 0.04480 * 10 9 7 27 27 H 1.08003 * 119.83228 * 180.02562 * 11 10 9 28 28 H 1.07994 * 119.78669 * 180.27815 * 12 11 10 29 29 H 0.97001 * 120.00194 * 145.52336 * 14 13 12 30 30 H 0.97004 * 119.99481 * 359.97438 * 17 15 14 31 31 H 1.09001 * 110.32207 * 0.02562 * 20 18 17 32 32 H 1.08998 * 110.32030 * 122.10441 * 20 18 17 33 33 H 1.09003 * 110.41021 * 94.97773 * 21 20 18 34 34 H 1.08994 * 110.41095 * 217.41757 * 21 20 18 35 35 H 1.00905 * 110.91901 * 279.80909 * 22 21 20 36 36 H 1.09001 * 110.41486 * 201.79881 * 23 22 21 37 37 H 1.09001 * 110.51402 * 79.40165 * 23 22 21 38 38 H 1.08001 * 120.15971 * 180.28608 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0535 -1.2317 0.2707 9 6 1.3462 -2.4105 -0.3526 10 6 1.8187 -3.6477 0.1247 11 6 1.1696 -4.8104 -0.2237 12 6 0.0494 -4.7691 -1.0378 13 6 -0.4259 -3.5532 -1.5220 14 7 -1.5550 -3.5236 -2.3485 15 6 -1.7792 -4.5277 -3.2192 16 8 -0.9546 -5.4109 -3.3540 17 7 -2.9174 -4.5526 -3.9406 18 6 -3.1609 -5.6437 -4.8874 19 1 -2.2210 -5.9832 -5.3225 20 6 -4.1297 -5.1843 -5.9965 21 6 -5.3553 -6.1149 -5.8724 22 7 -4.8312 -7.3340 -5.2011 23 6 -3.8822 -6.8132 -4.1838 24 6 0.2125 -2.3744 -1.1831 25 1 -0.4850 0.8400 -0.0004 26 1 2.6888 -3.6844 0.7635 27 1 1.5325 -5.7591 0.1433 28 1 -0.4558 -5.6863 -1.3021 29 1 -2.1762 -2.7806 -2.2946 30 1 -3.5754 -3.8480 -3.8327 31 1 -4.4237 -4.1470 -5.8366 32 1 -3.6653 -5.2985 -6.9760 33 1 -6.1274 -5.6471 -5.2614 34 1 -5.7473 -6.3608 -6.8592 35 1 -4.3602 -7.9345 -5.8612 36 1 -3.1670 -7.5855 -3.9004 37 1 -4.4211 -6.4550 -3.3066 38 1 -0.1583 -1.4304 -1.5545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599606055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:04 Heat of formation + Delta-G solvation = -25.751891 kcal Electronic energy + Delta-G solvation = -20598.069448 eV Core-core repulsion = 17438.938651 eV Total energy + Delta-G solvation = -3159.130798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56494 -39.78583 -38.77492 -35.97812 -35.26009 -34.80276 -31.45228 -30.66745 -30.06265 -28.57171 -27.15069 -23.63263 -23.04602 -22.82898 -21.63026 -21.53038 -19.63919 -19.19269 -17.78596 -17.42925 -17.03927 -16.59472 -16.28987 -16.23960 -15.65491 -14.99949 -14.86203 -14.79169 -14.61443 -14.17441 -13.79271 -13.49548 -13.08494 -12.89056 -12.83779 -12.68907 -12.54136 -12.33813 -12.11144 -11.91229 -11.80090 -11.56596 -11.26572 -11.05322 -10.77336 -10.45000 -9.57414 -9.31472 -8.81481 -8.51712 -6.34172 0.90021 1.06735 1.41041 1.53218 1.53582 1.66850 2.14252 2.23498 2.78153 3.17279 3.38781 3.62169 3.74129 3.93694 4.00630 4.31152 4.42029 4.45845 4.59476 4.74844 4.84947 4.89733 4.94284 5.00387 5.11207 5.12119 5.17058 5.21969 5.34991 5.39548 5.70614 5.76246 5.82543 6.01010 6.10366 6.17562 6.36929 6.39808 6.69160 6.95208 6.98193 7.08340 7.56058 8.35750 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.003767 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.219517 B = 7431.985366 C = 8155.215310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.094 3.906 10 C -0.250 4.250 11 C -0.084 4.084 12 C -0.240 4.240 13 C 0.170 3.830 14 N -0.674 5.674 15 C 0.698 3.302 16 O -0.615 6.615 17 N -0.719 5.719 18 C 0.128 3.872 19 H 0.071 0.929 20 C -0.155 4.155 21 C 0.043 3.957 22 N -0.672 5.672 23 C 0.034 3.966 24 C -0.204 4.204 25 H 0.288 0.712 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.412 0.588 30 H 0.411 0.589 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.346 0.654 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 -4.007 -10.822 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.091 3.909 10 C -0.270 4.270 11 C -0.103 4.103 12 C -0.261 4.261 13 C 0.076 3.924 14 N -0.321 5.321 15 C 0.399 3.601 16 O -0.495 6.495 17 N -0.376 5.376 18 C 0.020 3.980 19 H 0.090 0.910 20 C -0.194 4.194 21 C -0.087 4.087 22 N -0.300 5.300 23 C -0.098 4.098 24 C -0.226 4.226 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.249 0.751 30 H 0.248 0.752 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.725 -4.846 -10.519 16.481 hybrid contribution 0.792 1.579 -0.158 1.774 sum -10.933 -3.267 -10.677 15.627 Atomic orbital electron populations 1.69848 1.08741 1.30456 1.35698 1.26688 0.95589 1.04199 0.91182 0.85209 0.79078 0.76054 0.79378 1.18876 1.19083 1.18507 1.19788 0.98009 0.92184 1.42850 0.90646 1.17749 0.91366 0.93080 0.88738 1.21211 1.04747 0.93054 1.08000 1.20720 0.95097 0.97400 0.97056 1.20472 1.02626 0.95832 1.07159 1.17437 0.88242 0.94262 0.92468 1.42467 1.26071 1.24685 1.38877 1.16151 0.82806 0.82049 0.79139 1.90892 1.47469 1.40331 1.70777 1.45032 1.19438 1.29449 1.43670 1.22339 0.99323 0.87030 0.89286 0.91041 1.23137 0.96210 1.02239 0.97853 1.23124 0.96244 0.89063 1.00250 1.63325 1.34260 1.16187 1.16188 1.23339 0.93966 0.95887 0.96573 1.20979 1.00655 0.95582 1.05399 0.90092 0.88075 0.86358 0.88072 0.75106 0.75198 0.88933 0.89383 0.89844 0.88378 0.83808 0.91788 0.90576 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.37 10.94 21.82 0.24 -41.14 16 2 C 0.04 1.91 5.16 85.25 0.44 2.35 16 3 Si 0.98 37.64 29.59 68.60 2.03 39.67 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.50 -26.99 9.05 23.46 0.21 -26.78 16 8 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 9 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 10 C -0.25 -12.87 9.79 22.75 0.22 -12.64 16 11 C -0.08 -4.04 10.02 22.20 0.22 -3.81 16 12 C -0.24 -11.78 8.66 22.58 0.20 -11.58 16 13 C 0.17 8.20 6.25 38.09 0.24 8.44 16 14 N -0.67 -25.76 5.34 -317.32 -1.69 -27.45 16 15 C 0.70 25.38 8.29 179.05 1.48 26.87 16 16 O -0.62 -27.66 13.74 -3.98 -0.05 -27.72 16 17 N -0.72 -17.75 5.07 -453.54 -2.30 -20.05 16 18 C 0.13 2.76 3.41 45.89 0.16 2.92 16 19 H 0.07 1.91 7.56 -2.39 -0.02 1.90 16 20 C -0.15 -2.09 6.75 31.49 0.21 -1.87 16 21 C 0.04 0.52 7.48 86.42 0.65 1.17 16 22 N -0.67 -11.32 7.63 -500.48 -3.82 -15.14 16 23 C 0.03 0.73 7.19 86.45 0.62 1.36 16 24 C -0.20 -10.73 8.60 22.85 0.20 -10.54 16 25 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 26 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 28 H 0.10 4.95 6.48 -2.91 -0.02 4.93 16 29 H 0.41 13.05 8.83 -92.71 -0.82 12.23 16 30 H 0.41 7.45 8.38 -92.70 -0.78 6.68 16 31 H 0.09 1.05 7.67 -2.39 -0.02 1.03 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.35 4.93 8.92 -89.69 -0.80 4.13 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.77 8.06 -2.39 -0.02 1.75 16 38 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 Total: -1.00 -67.04 316.77 -2.15 -69.19 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -1.28 Total: 41.73 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.73 Total: -19.09 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -7.57 Total: -103.77 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -67.04 -2.15 -69.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599606055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.435 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds