Wall clock time and date at job start Mon Mar 30 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00021 * 2 1 4 4 O 1.20821 * 119.99869 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99946 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.30220 * 300.25029 * 5 3 2 7 7 C 1.52596 * 109.84229 * 180.92299 * 5 3 2 8 8 N 1.47152 * 108.80142 * 189.57433 * 7 5 3 9 9 C 1.46900 * 111.00016 * 194.33165 * 8 7 5 10 10 C 1.50709 * 109.47179 * 303.04740 * 9 8 7 11 11 H 1.08000 * 119.99189 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00411 * 179.97438 * 10 9 8 13 13 N 1.31524 * 119.99945 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00336 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46635 * 59.99889 * 14 12 10 16 16 H 1.48500 * 109.47288 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46819 * 300.00263 * 14 12 10 18 18 C 1.46633 * 110.25951 * 70.90470 * 8 7 5 19 19 C 1.50621 * 110.48254 * 307.39135 * 18 8 7 20 20 C 1.38728 * 118.42420 * 197.58983 * 19 18 8 21 21 C 1.38013 * 120.37233 * 180.11451 * 20 19 18 22 22 C 1.38263 * 119.86929 * 0.29844 * 21 20 19 23 23 C 1.38027 * 119.83012 * 359.90164 * 22 21 20 24 24 C 1.37833 * 121.84297 * 18.07169 * 19 18 8 25 25 H 1.08994 * 109.47572 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.46689 * 60.00200 * 1 2 3 27 27 H 1.08999 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.74172 * 69.62255 * 7 5 3 29 29 H 1.09003 * 109.39813 * 309.31143 * 7 5 3 30 30 H 1.08998 * 109.47854 * 63.04620 * 9 8 7 31 31 H 1.09000 * 109.47301 * 183.05432 * 9 8 7 32 32 H 0.96991 * 119.99997 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.30392 * 187.07816 * 18 8 7 34 34 H 1.09002 * 109.13414 * 67.59237 * 18 8 7 35 35 H 1.08002 * 119.81646 * 0.39708 * 20 19 18 36 36 H 1.08002 * 120.06582 * 180.31852 * 21 20 19 37 37 H 1.07999 * 120.08278 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.83072 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9529 0.7763 0.8895 7 6 4.0085 2.7352 0.0236 8 7 5.4605 2.7948 -0.2078 9 6 5.9945 4.1194 0.1361 10 6 5.2732 5.1746 -0.6624 11 1 4.4957 4.8896 -1.3557 12 6 5.6053 6.5037 -0.5072 13 7 6.5518 6.8507 0.3375 14 14 4.7108 7.8116 -1.4964 15 1 3.2604 7.7650 -1.1811 16 1 5.2506 9.1507 -1.1488 17 1 4.9107 7.5588 -2.9460 18 6 5.7674 2.4496 -1.5995 19 6 5.1329 1.1344 -1.9686 20 6 5.6011 0.4673 -3.0912 21 6 5.0471 -0.7395 -3.4675 22 6 4.0156 -1.2847 -2.7257 23 6 3.5458 -0.6203 -1.6108 24 6 4.1037 0.5909 -1.2302 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.7737 3.1757 0.9925 29 1 3.4896 3.2830 -0.7631 30 1 5.8477 4.3054 1.2000 31 1 7.0591 4.1532 -0.0953 32 1 6.7857 7.7856 0.4464 33 1 6.8479 2.3755 -1.7225 34 1 5.3831 3.2314 -2.2547 35 1 6.4067 0.8925 -3.6715 36 1 5.4189 -1.2571 -4.3395 37 1 3.5793 -2.2287 -3.0173 38 1 2.7398 -1.0460 -1.0316 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599670671.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:00 Heat of formation + Delta-G solvation = -72.506303 kcal Electronic energy + Delta-G solvation = -21554.093717 eV Core-core repulsion = 18360.642744 eV Total energy + Delta-G solvation = -3193.450972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09047 -40.54001 -38.38708 -37.51107 -35.08580 -34.10788 -32.46035 -30.38040 -29.00833 -28.48381 -26.15689 -25.39349 -23.52383 -22.95546 -22.06639 -20.43736 -18.84965 -18.52436 -17.97531 -17.75793 -16.89395 -16.84976 -16.45552 -16.18655 -15.52730 -15.01233 -14.76414 -14.67788 -14.45173 -14.18623 -13.94211 -13.62314 -13.37143 -13.14919 -13.07569 -12.91816 -12.83938 -12.47827 -12.31607 -12.11960 -11.93342 -11.87523 -11.68085 -11.56104 -11.42058 -10.64449 -9.70856 -9.54982 -9.13137 -8.20875 -6.39090 0.38869 0.50482 1.07405 1.33281 1.35016 1.43097 1.62014 2.33986 2.87096 3.05346 3.22794 3.47930 3.63166 3.91349 4.06426 4.19350 4.20574 4.32702 4.34281 4.39101 4.51447 4.60876 4.68149 4.74236 4.80062 4.84908 4.96342 5.09751 5.14592 5.18941 5.26797 5.29340 5.57595 5.64461 5.66078 5.72449 5.94921 6.11614 6.18179 6.31380 6.63764 6.78664 7.32011 8.82540 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017280 B = 0.006025 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.966238 B = 4645.864846 C = 5600.623825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.347 6.347 3 C 0.480 3.520 4 O -0.534 6.534 5 C -0.031 4.031 6 H 0.137 0.863 7 C 0.087 3.913 8 N -0.530 5.530 9 C 0.201 3.799 10 C -0.563 4.563 11 H 0.050 0.950 12 C 0.018 3.982 13 N -0.920 5.920 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.094 3.906 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.094 4.094 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.142 0.858 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.013 0.987 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -19.138 -5.207 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.263 6.263 3 C 0.324 3.676 4 O -0.423 6.423 5 C -0.050 4.050 6 H 0.154 0.846 7 C -0.042 4.042 8 N -0.252 5.252 9 C 0.075 3.925 10 C -0.601 4.601 11 H 0.068 0.932 12 C -0.182 4.182 13 N -0.560 5.560 14 Si 0.776 3.224 15 H -0.202 1.202 16 H -0.201 1.201 17 H -0.194 1.194 18 C -0.034 4.034 19 C -0.078 4.078 20 C -0.147 4.147 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.094 4.094 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.849 -19.040 -4.808 21.148 hybrid contribution -0.762 2.176 -0.603 2.383 sum -8.611 -16.864 -5.411 19.693 Atomic orbital electron populations 1.23622 0.74823 1.06078 1.02388 1.86493 1.24918 1.31419 1.83510 1.23536 0.91432 0.81584 0.71076 1.90678 1.67576 1.37635 1.46381 1.19873 0.86584 0.97973 1.00588 0.84555 1.21483 0.89247 0.92501 1.00930 1.62659 1.11350 1.30007 1.21213 1.19465 0.94545 0.83288 0.95233 1.21904 1.20439 0.93186 1.24605 0.93184 1.25714 0.95622 1.00695 0.96143 1.70030 1.31080 1.18241 1.36615 0.85714 0.78794 0.78475 0.79387 1.20210 1.20054 1.19391 1.20873 1.00112 0.92951 0.89458 1.19785 0.96220 0.95844 0.95977 1.21250 1.01177 0.96301 0.96006 1.21461 0.96163 0.94845 1.00379 1.21448 0.97024 1.00889 0.94744 1.21719 1.00432 0.93479 0.98075 1.19137 0.97790 0.96643 0.95835 0.92059 0.92433 0.84052 0.91673 0.95989 0.96932 0.96430 0.92393 0.89757 0.94730 0.84794 0.82876 0.82709 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -8.36 7.67 -51.44 -0.39 -8.75 16 3 C 0.48 15.48 7.07 71.24 0.50 15.98 16 4 O -0.53 -20.98 15.60 21.98 0.34 -20.64 16 5 C -0.03 -1.04 2.89 -12.42 -0.04 -1.08 16 6 H 0.14 4.07 8.14 -2.38 -0.02 4.05 16 7 C 0.09 3.74 3.61 86.12 0.31 4.05 16 8 N -0.53 -23.74 4.91 -906.36 -4.45 -28.18 16 9 C 0.20 10.76 5.10 85.56 0.44 11.20 16 10 C -0.56 -32.13 7.65 25.60 0.20 -31.94 16 11 H 0.05 2.89 5.88 -2.91 -0.02 2.87 16 12 C 0.02 1.06 5.46 84.65 0.46 1.52 16 13 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16 14 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 C 0.09 3.80 5.08 85.58 0.43 4.23 16 19 C -0.08 -2.61 5.79 -19.87 -0.12 -2.73 16 20 C -0.13 -3.45 9.65 22.33 0.22 -3.24 16 21 C -0.11 -2.31 10.05 22.22 0.22 -2.08 16 22 C -0.12 -2.48 10.05 22.23 0.22 -2.26 16 23 C -0.12 -2.96 9.00 22.32 0.20 -2.76 16 24 C -0.09 -2.95 5.44 -19.85 -0.11 -3.06 16 25 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 2.94 8.03 -2.39 -0.02 2.92 16 29 H 0.02 1.06 6.46 -2.39 -0.02 1.05 16 30 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.02 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.08 3.26 8.13 -2.39 -0.02 3.24 16 34 H 0.03 1.57 6.72 -2.39 -0.02 1.55 16 35 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.15 3.26 5.34 -2.91 -0.02 3.25 16 Total: -1.00 -69.12 311.57 3.02 -66.10 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.06 Total: 9.55 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.14 Total: -10.53 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -4.16 Total: -83.00 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.12 3.02 -66.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599670671.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.405 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds